data_3MCP # _entry.id 3MCP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MCP pdb_00003mcp 10.2210/pdb3mcp/pdb RCSB RCSB058385 ? ? WWPDB D_1000058385 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 400675 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3MCP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Glucokinase (BDI_1628) from Parabacteroides distasonis ATCC 8503 at 3.00 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3MCP _cell.length_a 80.732 _cell.length_b 80.732 _cell.length_c 142.581 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MCP _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Glucokinase 39298.441 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 4 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)(MSE)YTNDNRIV(MSE)TLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPV AISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYK NLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAV(MSE)RVYAERSGDAGARTPKEIFEI AEGIRPGNREAAIAAFEELGE(MSE)AGDALASAITLIDGLIVIGGGLSGASKYILPVLLKE(MSE)NAQTG(MSE) (MSE)DGARFGRLQKEVYDLDEEKSFAGFARGEAVEVLVPGTNRKVGYDPCKRIGVTFSKQGANRSIA(MSE)GAYVFAL NHLSK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMMYTNDNRIVMTLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADY QAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFG AGVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAVMRVYAERSGDAGARTPKEIFEIAEGIRPGNREAAIAAF EELGEMAGDALASAITLIDGLIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARFGRLQKEVYDLDEEKSFAGFARGEAV EVLVPGTNRKVGYDPCKRIGVTFSKQGANRSIAMGAYVFALNHLSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 400675 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 MSE n 1 4 TYR n 1 5 THR n 1 6 ASN n 1 7 ASP n 1 8 ASN n 1 9 ARG n 1 10 ILE n 1 11 VAL n 1 12 MSE n 1 13 THR n 1 14 LEU n 1 15 ASP n 1 16 ALA n 1 17 GLY n 1 18 GLY n 1 19 THR n 1 20 ASN n 1 21 PHE n 1 22 VAL n 1 23 PHE n 1 24 SER n 1 25 ALA n 1 26 ILE n 1 27 GLN n 1 28 GLY n 1 29 GLY n 1 30 LYS n 1 31 GLU n 1 32 ILE n 1 33 ALA n 1 34 ASP n 1 35 PRO n 1 36 VAL n 1 37 VAL n 1 38 LEU n 1 39 PRO n 1 40 ALA n 1 41 CYS n 1 42 ALA n 1 43 ASP n 1 44 CYS n 1 45 LEU n 1 46 ASP n 1 47 LYS n 1 48 CYS n 1 49 LEU n 1 50 GLY n 1 51 ASN n 1 52 LEU n 1 53 VAL n 1 54 GLU n 1 55 GLY n 1 56 PHE n 1 57 LYS n 1 58 ALA n 1 59 ILE n 1 60 GLN n 1 61 ALA n 1 62 GLY n 1 63 LEU n 1 64 PRO n 1 65 GLU n 1 66 ALA n 1 67 PRO n 1 68 VAL n 1 69 ALA n 1 70 ILE n 1 71 SER n 1 72 PHE n 1 73 ALA n 1 74 PHE n 1 75 PRO n 1 76 GLY n 1 77 PRO n 1 78 ALA n 1 79 ASP n 1 80 TYR n 1 81 GLN n 1 82 ALA n 1 83 GLY n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ASP n 1 88 LEU n 1 89 PRO n 1 90 ASN n 1 91 PHE n 1 92 PRO n 1 93 SER n 1 94 PHE n 1 95 ARG n 1 96 GLY n 1 97 GLY n 1 98 VAL n 1 99 ALA n 1 100 LEU n 1 101 GLY n 1 102 PRO n 1 103 PHE n 1 104 LEU n 1 105 GLU n 1 106 ASP n 1 107 ILE n 1 108 PHE n 1 109 GLY n 1 110 ILE n 1 111 PRO n 1 112 VAL n 1 113 PHE n 1 114 ILE n 1 115 ASN n 1 116 ASN n 1 117 ASP n 1 118 GLY n 1 119 SER n 1 120 LEU n 1 121 PHE n 1 122 ALA n 1 123 TYR n 1 124 GLY n 1 125 GLU n 1 126 ALA n 1 127 LEU n 1 128 THR n 1 129 GLY n 1 130 VAL n 1 131 LEU n 1 132 PRO n 1 133 GLU n 1 134 ILE n 1 135 ASN n 1 136 ARG n 1 137 ARG n 1 138 LEU n 1 139 ARG n 1 140 GLU n 1 141 ALA n 1 142 GLY n 1 143 SER n 1 144 THR n 1 145 LYS n 1 146 ARG n 1 147 TYR n 1 148 LYS n 1 149 ASN n 1 150 LEU n 1 151 LEU n 1 152 GLY n 1 153 VAL n 1 154 THR n 1 155 LEU n 1 156 GLY n 1 157 THR n 1 158 GLY n 1 159 PHE n 1 160 GLY n 1 161 ALA n 1 162 GLY n 1 163 VAL n 1 164 VAL n 1 165 ILE n 1 166 ASP n 1 167 GLY n 1 168 GLU n 1 169 LEU n 1 170 LEU n 1 171 ARG n 1 172 GLY n 1 173 ASP n 1 174 ASN n 1 175 ALA n 1 176 ALA n 1 177 GLY n 1 178 GLY n 1 179 TYR n 1 180 VAL n 1 181 TRP n 1 182 CYS n 1 183 LEU n 1 184 ARG n 1 185 ASN n 1 186 LYS n 1 187 LYS n 1 188 TYR n 1 189 PRO n 1 190 GLU n 1 191 TYR n 1 192 ILE n 1 193 VAL n 1 194 GLU n 1 195 GLU n 1 196 SER n 1 197 VAL n 1 198 SER n 1 199 ILE n 1 200 ARG n 1 201 ALA n 1 202 VAL n 1 203 MSE n 1 204 ARG n 1 205 VAL n 1 206 TYR n 1 207 ALA n 1 208 GLU n 1 209 ARG n 1 210 SER n 1 211 GLY n 1 212 ASP n 1 213 ALA n 1 214 GLY n 1 215 ALA n 1 216 ARG n 1 217 THR n 1 218 PRO n 1 219 LYS n 1 220 GLU n 1 221 ILE n 1 222 PHE n 1 223 GLU n 1 224 ILE n 1 225 ALA n 1 226 GLU n 1 227 GLY n 1 228 ILE n 1 229 ARG n 1 230 PRO n 1 231 GLY n 1 232 ASN n 1 233 ARG n 1 234 GLU n 1 235 ALA n 1 236 ALA n 1 237 ILE n 1 238 ALA n 1 239 ALA n 1 240 PHE n 1 241 GLU n 1 242 GLU n 1 243 LEU n 1 244 GLY n 1 245 GLU n 1 246 MSE n 1 247 ALA n 1 248 GLY n 1 249 ASP n 1 250 ALA n 1 251 LEU n 1 252 ALA n 1 253 SER n 1 254 ALA n 1 255 ILE n 1 256 THR n 1 257 LEU n 1 258 ILE n 1 259 ASP n 1 260 GLY n 1 261 LEU n 1 262 ILE n 1 263 VAL n 1 264 ILE n 1 265 GLY n 1 266 GLY n 1 267 GLY n 1 268 LEU n 1 269 SER n 1 270 GLY n 1 271 ALA n 1 272 SER n 1 273 LYS n 1 274 TYR n 1 275 ILE n 1 276 LEU n 1 277 PRO n 1 278 VAL n 1 279 LEU n 1 280 LEU n 1 281 LYS n 1 282 GLU n 1 283 MSE n 1 284 ASN n 1 285 ALA n 1 286 GLN n 1 287 THR n 1 288 GLY n 1 289 MSE n 1 290 MSE n 1 291 ASP n 1 292 GLY n 1 293 ALA n 1 294 ARG n 1 295 PHE n 1 296 GLY n 1 297 ARG n 1 298 LEU n 1 299 GLN n 1 300 LYS n 1 301 GLU n 1 302 VAL n 1 303 TYR n 1 304 ASP n 1 305 LEU n 1 306 ASP n 1 307 GLU n 1 308 GLU n 1 309 LYS n 1 310 SER n 1 311 PHE n 1 312 ALA n 1 313 GLY n 1 314 PHE n 1 315 ALA n 1 316 ARG n 1 317 GLY n 1 318 GLU n 1 319 ALA n 1 320 VAL n 1 321 GLU n 1 322 VAL n 1 323 LEU n 1 324 VAL n 1 325 PRO n 1 326 GLY n 1 327 THR n 1 328 ASN n 1 329 ARG n 1 330 LYS n 1 331 VAL n 1 332 GLY n 1 333 TYR n 1 334 ASP n 1 335 PRO n 1 336 CYS n 1 337 LYS n 1 338 ARG n 1 339 ILE n 1 340 GLY n 1 341 VAL n 1 342 THR n 1 343 PHE n 1 344 SER n 1 345 LYS n 1 346 GLN n 1 347 GLY n 1 348 ALA n 1 349 ASN n 1 350 ARG n 1 351 SER n 1 352 ILE n 1 353 ALA n 1 354 MSE n 1 355 GLY n 1 356 ALA n 1 357 TYR n 1 358 VAL n 1 359 PHE n 1 360 ALA n 1 361 LEU n 1 362 ASN n 1 363 HIS n 1 364 LEU n 1 365 SER n 1 366 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BDI_1628 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8503 / DSM 20701 / NCTC 11152' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Parabacteroides distasonis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435591 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6LCG6_PARD8 _struct_ref.pdbx_db_accession A6LCG6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MMYTNDNRIVMTLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVEGFKAIQADLPEAPVAISFAFPGPADYQ AGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGA GVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAVMRVYAERSGDAGARTPKEIFEIAEGIRPGNREAAIAAFE ELGEMAGDALASAITLIDGLIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARFGRLQKEVYDLDDEKSFAGFARGEAVE VLVPGTNRKVGYDPCKRIGVTFSKQGANRSIAMGAYVFALNHLSK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MCP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 366 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6LCG6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 365 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 365 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MCP GLY A 1 ? UNP A6LCG6 ? ? 'expression tag' 0 1 1 3MCP GLY A 62 ? UNP A6LCG6 ASP 61 'see remark 999' 61 2 1 3MCP GLU A 307 ? UNP A6LCG6 ASP 306 'see remark 999' 306 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3MCP # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10.0000% Glycerol, 3.6000M NaFormate, No Buffer pH 7.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-07-30 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97911 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97911 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3MCP _reflns.d_resolution_high 3.00 _reflns.d_resolution_low 28.748 _reflns.number_obs 10015 _reflns.pdbx_Rmerge_I_obs 0.130 _reflns.pdbx_netI_over_sigmaI 14.800 _reflns.pdbx_Rsym_value 0.130 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 70.492 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 3.00 3.08 ? 5232 ? 0.716 1.1 0.716 ? 7.30 ? 714 100.00 ? 1 3.08 3.16 ? 5022 ? 0.605 1.3 0.605 ? 7.20 ? 697 100.00 ? 2 3.16 3.25 ? 4968 ? 0.478 1.6 0.478 ? 7.20 ? 691 100.00 ? 3 3.25 3.35 ? 4790 ? 0.375 2.0 0.375 ? 7.20 ? 663 100.00 ? 4 3.35 3.46 ? 4587 ? 0.322 2.3 0.322 ? 7.20 ? 641 100.00 ? 5 3.46 3.59 ? 4500 ? 0.239 3.2 0.239 ? 7.20 ? 628 100.00 ? 6 3.59 3.72 ? 4360 ? 0.190 3.9 0.190 ? 7.20 ? 607 100.00 ? 7 3.72 3.87 ? 4139 ? 0.164 4.6 0.164 ? 7.10 ? 581 100.00 ? 8 3.87 4.05 ? 4023 ? 0.141 5.2 0.141 ? 7.10 ? 567 100.00 ? 9 4.05 4.24 ? 3890 ? 0.115 6.5 0.115 ? 7.10 ? 546 100.00 ? 10 4.24 4.47 ? 3576 ? 0.100 6.9 0.100 ? 7.00 ? 510 100.00 ? 11 4.47 4.74 ? 3475 ? 0.090 7.9 0.090 ? 7.00 ? 495 100.00 ? 12 4.74 5.07 ? 3177 ? 0.080 9.1 0.080 ? 6.90 ? 458 100.00 ? 13 5.07 5.48 ? 3066 ? 0.087 8.3 0.087 ? 6.90 ? 442 100.00 ? 14 5.48 6.00 ? 2770 ? 0.091 8.0 0.091 ? 6.90 ? 404 100.00 ? 15 6.00 6.71 ? 2586 ? 0.083 8.7 0.083 ? 6.80 ? 380 100.00 ? 16 6.71 7.75 ? 2158 ? 0.058 11.7 0.058 ? 6.60 ? 326 100.00 ? 17 7.75 9.49 ? 1886 ? 0.047 13.6 0.047 ? 6.40 ? 293 100.00 ? 18 9.49 13.42 ? 1445 ? 0.040 15.2 0.040 ? 6.10 ? 238 100.00 ? 19 13.42 28.75 ? 703 ? 0.046 13.0 0.046 ? 5.20 ? 134 90.60 ? 20 # _refine.entry_id 3MCP _refine.ls_d_res_high 3.000 _refine.ls_d_res_low 28.748 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.810 _refine.ls_number_reflns_obs 9970 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. GLYCEROL (GOL) AND FORMIC ACID FROM THE CRYSTALLIZATION SOLUTION WERE MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_R_work 0.206 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.249 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 477 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 53.803 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.800 _refine.aniso_B[2][2] -1.800 _refine.aniso_B[3][3] 3.600 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.400 _refine.overall_SU_ML 0.336 _refine.overall_SU_B 18.642 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 94.43 _refine.B_iso_min 22.42 _refine.occupancy_max 1.00 _refine.occupancy_min 0.75 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2590 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 2618 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 28.748 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2650 0.010 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1770 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3584 0.919 1.980 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 4318 0.682 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 353 3.396 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 103 27.812 24.369 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 406 13.335 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 14 11.117 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 400 0.060 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 3023 0.006 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 533 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1746 0.839 2.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 739 0.064 2.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2757 1.722 4.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 904 2.578 6.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 827 4.437 8.000 ? ? # _refine_ls_shell.d_res_high 3.000 _refine_ls_shell.d_res_low 3.078 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.720 _refine_ls_shell.number_reflns_R_work 680 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.297 _refine_ls_shell.R_factor_R_free 0.343 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 710 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MCP _struct.title 'Crystal structure of Glucokinase (BDI_1628) from Parabacteroides distasonis ATCC 8503 at 3.00 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3MCP # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 44 ? ALA A 61 ? CYS A 43 ALA A 60 1 ? 18 HELX_P HELX_P2 2 PHE A 91 ? ARG A 95 ? PHE A 90 ARG A 94 5 ? 5 HELX_P HELX_P3 3 ALA A 99 ? GLY A 109 ? ALA A 98 GLY A 108 1 ? 11 HELX_P HELX_P4 4 ASN A 116 ? THR A 128 ? ASN A 115 THR A 127 1 ? 13 HELX_P HELX_P5 5 GLY A 129 ? ALA A 141 ? GLY A 128 ALA A 140 1 ? 13 HELX_P HELX_P6 6 ILE A 192 ? SER A 196 ? ILE A 191 SER A 195 5 ? 5 HELX_P HELX_P7 7 SER A 198 ? SER A 210 ? SER A 197 SER A 209 1 ? 13 HELX_P HELX_P8 8 THR A 217 ? GLU A 226 ? THR A 216 GLU A 225 1 ? 10 HELX_P HELX_P9 9 ASN A 232 ? ASP A 259 ? ASN A 231 ASP A 258 1 ? 28 HELX_P HELX_P10 10 GLY A 266 ? GLY A 270 ? GLY A 265 GLY A 269 5 ? 5 HELX_P HELX_P11 11 ALA A 271 ? THR A 287 ? ALA A 270 THR A 286 1 ? 17 HELX_P HELX_P12 12 GLU A 307 ? GLY A 317 ? GLU A 306 GLY A 316 1 ? 11 HELX_P HELX_P13 13 GLY A 347 ? LEU A 364 ? GLY A 346 LEU A 363 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A MSE 3 N ? ? A MSE 1 A MSE 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 3 C ? ? ? 1_555 A TYR 4 N ? ? A MSE 2 A TYR 3 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale3 covale both ? A VAL 11 C ? ? ? 1_555 A MSE 12 N ? ? A VAL 10 A MSE 11 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 12 C ? ? ? 1_555 A THR 13 N ? ? A MSE 11 A THR 12 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A VAL 202 C ? ? ? 1_555 A MSE 203 N ? ? A VAL 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A MSE 203 C ? ? ? 1_555 A ARG 204 N ? ? A MSE 202 A ARG 203 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A GLU 245 C ? ? ? 1_555 A MSE 246 N ? ? A GLU 244 A MSE 245 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale8 covale both ? A MSE 246 C ? ? ? 1_555 A ALA 247 N ? ? A MSE 245 A ALA 246 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A GLU 282 C ? ? ? 1_555 A MSE 283 N ? ? A GLU 281 A MSE 282 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale10 covale both ? A MSE 283 C ? ? ? 1_555 A ASN 284 N ? ? A MSE 282 A ASN 283 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale11 covale both ? A GLY 288 C ? ? ? 1_555 A MSE 289 N ? ? A GLY 287 A MSE 288 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale12 covale both ? A MSE 289 C ? ? ? 1_555 A MSE 290 N ? ? A MSE 288 A MSE 289 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale13 covale both ? A ALA 353 C ? ? ? 1_555 A MSE 354 N ? ? A ALA 352 A MSE 353 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? A MSE 354 C ? ? ? 1_555 A GLY 355 N ? ? A MSE 353 A GLY 354 1_555 ? ? ? ? ? ? ? 1.323 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 76 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 75 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 77 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 76 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? D ? 6 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? parallel D 5 6 ? parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 30 ? GLU A 31 ? LYS A 29 GLU A 30 A 2 ASN A 20 ? GLN A 27 ? ASN A 19 GLN A 26 A 3 VAL A 36 ? PRO A 39 ? VAL A 35 PRO A 38 B 1 LYS A 30 ? GLU A 31 ? LYS A 29 GLU A 30 B 2 ASN A 20 ? GLN A 27 ? ASN A 19 GLN A 26 B 3 ILE A 10 ? ASP A 15 ? ILE A 9 ASP A 14 B 4 ALA A 69 ? ALA A 73 ? ALA A 68 ALA A 72 B 5 VAL A 112 ? ASN A 115 ? VAL A 111 ASN A 114 C 1 ALA A 78 ? ASP A 79 ? ALA A 77 ASP A 78 C 2 ILE A 84 ? ILE A 85 ? ILE A 83 ILE A 84 D 1 GLU A 168 ? LEU A 169 ? GLU A 167 LEU A 168 D 2 PHE A 159 ? ILE A 165 ? PHE A 158 ILE A 164 D 3 ASN A 149 ? LEU A 155 ? ASN A 148 LEU A 154 D 4 LEU A 261 ? GLY A 265 ? LEU A 260 GLY A 264 D 5 ARG A 338 ? PHE A 343 ? ARG A 337 PHE A 342 D 6 GLU A 301 ? ASP A 304 ? GLU A 300 ASP A 303 E 1 VAL A 320 ? LEU A 323 ? VAL A 319 LEU A 322 E 2 LYS A 330 ? TYR A 333 ? LYS A 329 TYR A 332 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 30 ? O LYS A 29 N GLN A 27 ? N GLN A 26 A 2 3 N PHE A 23 ? N PHE A 22 O VAL A 36 ? O VAL A 35 B 1 2 O LYS A 30 ? O LYS A 29 N GLN A 27 ? N GLN A 26 B 2 3 O ILE A 26 ? O ILE A 25 N VAL A 11 ? N VAL A 10 B 3 4 N MSE A 12 ? N MSE A 11 O ALA A 69 ? O ALA A 68 B 4 5 N ILE A 70 ? N ILE A 69 O PHE A 113 ? O PHE A 112 C 1 2 N ASP A 79 ? N ASP A 78 O ILE A 84 ? O ILE A 83 D 1 2 O GLU A 168 ? O GLU A 167 N ILE A 165 ? N ILE A 164 D 2 3 O GLY A 162 ? O GLY A 161 N GLY A 152 ? N GLY A 151 D 3 4 N LEU A 155 ? N LEU A 154 O GLY A 265 ? O GLY A 264 D 4 5 N ILE A 262 ? N ILE A 261 O GLY A 340 ? O GLY A 339 D 5 6 O ILE A 339 ? O ILE A 338 N GLU A 301 ? N GLU A 300 E 1 2 N VAL A 322 ? N VAL A 321 O VAL A 331 ? O VAL A 330 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 366 ? 1 'BINDING SITE FOR RESIDUE GOL A 366' AC2 Software A GOL 367 ? 4 'BINDING SITE FOR RESIDUE GOL A 367' AC3 Software A FMT 368 ? 7 'BINDING SITE FOR RESIDUE FMT A 368' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 GLY A 267 ? GLY A 266 . ? 1_555 ? 2 AC2 4 GLY A 118 ? GLY A 117 . ? 1_555 ? 3 AC2 4 GLY A 160 ? GLY A 159 . ? 1_555 ? 4 AC2 4 ALA A 161 ? ALA A 160 . ? 1_555 ? 5 AC2 4 TYR A 179 ? TYR A 178 . ? 1_555 ? 6 AC3 7 GLU A 133 ? GLU A 132 . ? 1_555 ? 7 AC3 7 ILE A 134 ? ILE A 133 . ? 1_555 ? 8 AC3 7 ARG A 137 ? ARG A 136 . ? 1_555 ? 9 AC3 7 LEU A 305 ? LEU A 304 . ? 1_555 ? 10 AC3 7 ASP A 306 ? ASP A 305 . ? 1_555 ? 11 AC3 7 THR A 342 ? THR A 341 . ? 1_555 ? 12 AC3 7 LYS A 345 ? LYS A 344 . ? 1_555 ? # _atom_sites.entry_id 3MCP _atom_sites.fract_transf_matrix[1][1] 0.012387 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012387 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007014 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 MSE 3 2 2 MSE MSE A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 ASP 7 6 6 ASP ASP A . n A 1 8 ASN 8 7 7 ASN ASN A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 MSE 12 11 11 MSE MSE A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 CYS 41 40 40 CYS CYS A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ASP 43 42 42 ASP ASP A . n A 1 44 CYS 44 43 43 CYS CYS A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 CYS 48 47 47 CYS CYS A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 ASN 51 50 50 ASN ASN A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 PHE 56 55 55 PHE PHE A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 GLN 60 59 59 GLN GLN A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 PRO 64 63 63 PRO PRO A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 PRO 67 66 66 PRO PRO A . n A 1 68 VAL 68 67 67 VAL VAL A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 PHE 74 73 73 PHE PHE A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 PRO 77 76 76 PRO PRO A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 TYR 80 79 79 TYR TYR A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 PRO 89 88 88 PRO PRO A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 SER 93 92 92 SER SER A . n A 1 94 PHE 94 93 93 PHE PHE A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 PHE 103 102 102 PHE PHE A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 PHE 108 107 107 PHE PHE A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 PHE 113 112 112 PHE PHE A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 ASN 115 114 114 ASN ASN A . n A 1 116 ASN 116 115 115 ASN ASN A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 PHE 121 120 120 PHE PHE A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 TYR 123 122 122 TYR TYR A . n A 1 124 GLY 124 123 123 GLY GLY A . n A 1 125 GLU 125 124 124 GLU GLU A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 PRO 132 131 131 PRO PRO A . n A 1 133 GLU 133 132 132 GLU GLU A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 ASN 135 134 134 ASN ASN A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 ARG 137 136 136 ARG ARG A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 ARG 139 138 138 ARG ARG A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 SER 143 142 142 SER SER A . n A 1 144 THR 144 143 143 THR THR A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 TYR 147 146 146 TYR TYR A . n A 1 148 LYS 148 147 147 LYS LYS A . n A 1 149 ASN 149 148 148 ASN ASN A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 GLY 152 151 151 GLY GLY A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 GLY 156 155 155 GLY GLY A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 GLY 158 157 157 GLY GLY A . n A 1 159 PHE 159 158 158 PHE PHE A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 ALA 161 160 160 ALA ALA A . n A 1 162 GLY 162 161 161 GLY GLY A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 VAL 164 163 163 VAL VAL A . n A 1 165 ILE 165 164 164 ILE ILE A . n A 1 166 ASP 166 165 165 ASP ASP A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 LEU 170 169 169 LEU LEU A . n A 1 171 ARG 171 170 170 ARG ARG A . n A 1 172 GLY 172 171 171 GLY GLY A . n A 1 173 ASP 173 172 172 ASP ASP A . n A 1 174 ASN 174 173 173 ASN ASN A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 GLY 178 177 177 GLY GLY A . n A 1 179 TYR 179 178 178 TYR TYR A . n A 1 180 VAL 180 179 179 VAL VAL A . n A 1 181 TRP 181 180 180 TRP TRP A . n A 1 182 CYS 182 181 181 CYS CYS A . n A 1 183 LEU 183 182 182 LEU LEU A . n A 1 184 ARG 184 183 183 ARG ARG A . n A 1 185 ASN 185 184 184 ASN ASN A . n A 1 186 LYS 186 185 185 LYS LYS A . n A 1 187 LYS 187 186 186 LYS LYS A . n A 1 188 TYR 188 187 187 TYR TYR A . n A 1 189 PRO 189 188 188 PRO PRO A . n A 1 190 GLU 190 189 189 GLU GLU A . n A 1 191 TYR 191 190 190 TYR TYR A . n A 1 192 ILE 192 191 191 ILE ILE A . n A 1 193 VAL 193 192 192 VAL VAL A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 GLU 195 194 194 GLU GLU A . n A 1 196 SER 196 195 195 SER SER A . n A 1 197 VAL 197 196 196 VAL VAL A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 ILE 199 198 198 ILE ILE A . n A 1 200 ARG 200 199 199 ARG ARG A . n A 1 201 ALA 201 200 200 ALA ALA A . n A 1 202 VAL 202 201 201 VAL VAL A . n A 1 203 MSE 203 202 202 MSE MSE A . n A 1 204 ARG 204 203 203 ARG ARG A . n A 1 205 VAL 205 204 204 VAL VAL A . n A 1 206 TYR 206 205 205 TYR TYR A . n A 1 207 ALA 207 206 206 ALA ALA A . n A 1 208 GLU 208 207 207 GLU GLU A . n A 1 209 ARG 209 208 208 ARG ARG A . n A 1 210 SER 210 209 209 SER SER A . n A 1 211 GLY 211 210 210 GLY GLY A . n A 1 212 ASP 212 211 211 ASP ASP A . n A 1 213 ALA 213 212 212 ALA ALA A . n A 1 214 GLY 214 213 213 GLY GLY A . n A 1 215 ALA 215 214 214 ALA ALA A . n A 1 216 ARG 216 215 215 ARG ARG A . n A 1 217 THR 217 216 216 THR THR A . n A 1 218 PRO 218 217 217 PRO PRO A . n A 1 219 LYS 219 218 218 LYS LYS A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 ILE 221 220 220 ILE ILE A . n A 1 222 PHE 222 221 221 PHE PHE A . n A 1 223 GLU 223 222 222 GLU GLU A . n A 1 224 ILE 224 223 223 ILE ILE A . n A 1 225 ALA 225 224 224 ALA ALA A . n A 1 226 GLU 226 225 225 GLU GLU A . n A 1 227 GLY 227 226 226 GLY GLY A . n A 1 228 ILE 228 227 227 ILE ILE A . n A 1 229 ARG 229 228 228 ARG ARG A . n A 1 230 PRO 230 229 229 PRO PRO A . n A 1 231 GLY 231 230 230 GLY GLY A . n A 1 232 ASN 232 231 231 ASN ASN A . n A 1 233 ARG 233 232 232 ARG ARG A . n A 1 234 GLU 234 233 233 GLU GLU A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 ALA 236 235 235 ALA ALA A . n A 1 237 ILE 237 236 236 ILE ILE A . n A 1 238 ALA 238 237 237 ALA ALA A . n A 1 239 ALA 239 238 238 ALA ALA A . n A 1 240 PHE 240 239 239 PHE PHE A . n A 1 241 GLU 241 240 240 GLU GLU A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 LEU 243 242 242 LEU LEU A . n A 1 244 GLY 244 243 243 GLY GLY A . n A 1 245 GLU 245 244 244 GLU GLU A . n A 1 246 MSE 246 245 245 MSE MSE A . n A 1 247 ALA 247 246 246 ALA ALA A . n A 1 248 GLY 248 247 247 GLY GLY A . n A 1 249 ASP 249 248 248 ASP ASP A . n A 1 250 ALA 250 249 249 ALA ALA A . n A 1 251 LEU 251 250 250 LEU LEU A . n A 1 252 ALA 252 251 251 ALA ALA A . n A 1 253 SER 253 252 252 SER SER A . n A 1 254 ALA 254 253 253 ALA ALA A . n A 1 255 ILE 255 254 254 ILE ILE A . n A 1 256 THR 256 255 255 THR THR A . n A 1 257 LEU 257 256 256 LEU LEU A . n A 1 258 ILE 258 257 257 ILE ILE A . n A 1 259 ASP 259 258 258 ASP ASP A . n A 1 260 GLY 260 259 259 GLY GLY A . n A 1 261 LEU 261 260 260 LEU LEU A . n A 1 262 ILE 262 261 261 ILE ILE A . n A 1 263 VAL 263 262 262 VAL VAL A . n A 1 264 ILE 264 263 263 ILE ILE A . n A 1 265 GLY 265 264 264 GLY GLY A . n A 1 266 GLY 266 265 265 GLY GLY A . n A 1 267 GLY 267 266 266 GLY GLY A . n A 1 268 LEU 268 267 267 LEU LEU A . n A 1 269 SER 269 268 268 SER SER A . n A 1 270 GLY 270 269 269 GLY GLY A . n A 1 271 ALA 271 270 270 ALA ALA A . n A 1 272 SER 272 271 271 SER SER A . n A 1 273 LYS 273 272 272 LYS LYS A . n A 1 274 TYR 274 273 273 TYR TYR A . n A 1 275 ILE 275 274 274 ILE ILE A . n A 1 276 LEU 276 275 275 LEU LEU A . n A 1 277 PRO 277 276 276 PRO PRO A . n A 1 278 VAL 278 277 277 VAL VAL A . n A 1 279 LEU 279 278 278 LEU LEU A . n A 1 280 LEU 280 279 279 LEU LEU A . n A 1 281 LYS 281 280 280 LYS LYS A . n A 1 282 GLU 282 281 281 GLU GLU A . n A 1 283 MSE 283 282 282 MSE MSE A . n A 1 284 ASN 284 283 283 ASN ASN A . n A 1 285 ALA 285 284 284 ALA ALA A . n A 1 286 GLN 286 285 285 GLN GLN A . n A 1 287 THR 287 286 286 THR THR A . n A 1 288 GLY 288 287 287 GLY GLY A . n A 1 289 MSE 289 288 288 MSE MSE A . n A 1 290 MSE 290 289 289 MSE MSE A . n A 1 291 ASP 291 290 ? ? ? A . n A 1 292 GLY 292 291 ? ? ? A . n A 1 293 ALA 293 292 ? ? ? A . n A 1 294 ARG 294 293 ? ? ? A . n A 1 295 PHE 295 294 ? ? ? A . n A 1 296 GLY 296 295 ? ? ? A . n A 1 297 ARG 297 296 ? ? ? A . n A 1 298 LEU 298 297 ? ? ? A . n A 1 299 GLN 299 298 298 GLN GLN A . n A 1 300 LYS 300 299 299 LYS LYS A . n A 1 301 GLU 301 300 300 GLU GLU A . n A 1 302 VAL 302 301 301 VAL VAL A . n A 1 303 TYR 303 302 302 TYR TYR A . n A 1 304 ASP 304 303 303 ASP ASP A . n A 1 305 LEU 305 304 304 LEU LEU A . n A 1 306 ASP 306 305 305 ASP ASP A . n A 1 307 GLU 307 306 306 GLU GLU A . n A 1 308 GLU 308 307 307 GLU GLU A . n A 1 309 LYS 309 308 308 LYS LYS A . n A 1 310 SER 310 309 309 SER SER A . n A 1 311 PHE 311 310 310 PHE PHE A . n A 1 312 ALA 312 311 311 ALA ALA A . n A 1 313 GLY 313 312 312 GLY GLY A . n A 1 314 PHE 314 313 313 PHE PHE A . n A 1 315 ALA 315 314 314 ALA ALA A . n A 1 316 ARG 316 315 315 ARG ARG A . n A 1 317 GLY 317 316 316 GLY GLY A . n A 1 318 GLU 318 317 317 GLU GLU A . n A 1 319 ALA 319 318 318 ALA ALA A . n A 1 320 VAL 320 319 319 VAL VAL A . n A 1 321 GLU 321 320 320 GLU GLU A . n A 1 322 VAL 322 321 321 VAL VAL A . n A 1 323 LEU 323 322 322 LEU LEU A . n A 1 324 VAL 324 323 323 VAL VAL A . n A 1 325 PRO 325 324 324 PRO PRO A . n A 1 326 GLY 326 325 325 GLY GLY A . n A 1 327 THR 327 326 326 THR THR A . n A 1 328 ASN 328 327 327 ASN ASN A . n A 1 329 ARG 329 328 328 ARG ARG A . n A 1 330 LYS 330 329 329 LYS LYS A . n A 1 331 VAL 331 330 330 VAL VAL A . n A 1 332 GLY 332 331 331 GLY GLY A . n A 1 333 TYR 333 332 332 TYR TYR A . n A 1 334 ASP 334 333 333 ASP ASP A . n A 1 335 PRO 335 334 334 PRO PRO A . n A 1 336 CYS 336 335 335 CYS CYS A . n A 1 337 LYS 337 336 336 LYS LYS A . n A 1 338 ARG 338 337 337 ARG ARG A . n A 1 339 ILE 339 338 338 ILE ILE A . n A 1 340 GLY 340 339 339 GLY GLY A . n A 1 341 VAL 341 340 340 VAL VAL A . n A 1 342 THR 342 341 341 THR THR A . n A 1 343 PHE 343 342 342 PHE PHE A . n A 1 344 SER 344 343 343 SER SER A . n A 1 345 LYS 345 344 344 LYS LYS A . n A 1 346 GLN 346 345 345 GLN GLN A . n A 1 347 GLY 347 346 346 GLY GLY A . n A 1 348 ALA 348 347 347 ALA ALA A . n A 1 349 ASN 349 348 348 ASN ASN A . n A 1 350 ARG 350 349 349 ARG ARG A . n A 1 351 SER 351 350 350 SER SER A . n A 1 352 ILE 352 351 351 ILE ILE A . n A 1 353 ALA 353 352 352 ALA ALA A . n A 1 354 MSE 354 353 353 MSE MSE A . n A 1 355 GLY 355 354 354 GLY GLY A . n A 1 356 ALA 356 355 355 ALA ALA A . n A 1 357 TYR 357 356 356 TYR TYR A . n A 1 358 VAL 358 357 357 VAL VAL A . n A 1 359 PHE 359 358 358 PHE PHE A . n A 1 360 ALA 360 359 359 ALA ALA A . n A 1 361 LEU 361 360 360 LEU LEU A . n A 1 362 ASN 362 361 361 ASN ASN A . n A 1 363 HIS 363 362 362 HIS HIS A . n A 1 364 LEU 364 363 363 LEU LEU A . n A 1 365 SER 365 364 ? ? ? A . n A 1 366 LYS 366 365 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 366 1 GOL GOL A . C 2 GOL 1 367 2 GOL GOL A . D 3 FMT 1 368 3 FMT FMT A . E 4 HOH 1 369 4 HOH HOH A . E 4 HOH 2 370 5 HOH HOH A . E 4 HOH 3 371 6 HOH HOH A . E 4 HOH 4 372 7 HOH HOH A . E 4 HOH 5 373 8 HOH HOH A . E 4 HOH 6 374 9 HOH HOH A . E 4 HOH 7 375 10 HOH HOH A . E 4 HOH 8 376 11 HOH HOH A . E 4 HOH 9 377 12 HOH HOH A . E 4 HOH 10 378 13 HOH HOH A . E 4 HOH 11 379 14 HOH HOH A . E 4 HOH 12 380 15 HOH HOH A . E 4 HOH 13 381 16 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 3 A MSE 2 ? MET SELENOMETHIONINE 3 A MSE 12 A MSE 11 ? MET SELENOMETHIONINE 4 A MSE 203 A MSE 202 ? MET SELENOMETHIONINE 5 A MSE 246 A MSE 245 ? MET SELENOMETHIONINE 6 A MSE 283 A MSE 282 ? MET SELENOMETHIONINE 7 A MSE 289 A MSE 288 ? MET SELENOMETHIONINE 8 A MSE 290 A MSE 289 ? MET SELENOMETHIONINE 9 A MSE 354 A MSE 353 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6220 ? 1 MORE -39 ? 1 'SSA (A^2)' 28200 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 142.5810000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3MCP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS A GLYCINE AT POSITION 61 INSTEAD OF AN ASPARTATE AND A GLUTAMATE AT POSITION 306 INSTEAD OF AN ASPARTATE. THE GLYCINE AT POSITION 61 AND GLUTAMATE AT POSITION 306 ARE SUPPORTED BY THE ELECTRON DENSITY. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 18 ? ? 83.92 -43.90 2 1 PRO A 63 ? ? -64.15 -73.33 3 1 ALA A 68 ? ? 178.80 -178.07 4 1 ASP A 165 ? ? 37.91 57.95 5 1 TYR A 187 ? ? -147.50 59.47 6 1 PRO A 188 ? ? -38.22 -31.35 7 1 SER A 197 ? ? 179.20 173.35 8 1 ASP A 258 ? ? 60.26 61.09 9 1 PRO A 324 ? ? -39.13 124.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 5 ? CG ? A ASN 6 CG 2 1 Y 1 A ASN 5 ? OD1 ? A ASN 6 OD1 3 1 Y 1 A ASN 5 ? ND2 ? A ASN 6 ND2 4 1 Y 1 A ASN 7 ? CG ? A ASN 8 CG 5 1 Y 1 A ASN 7 ? OD1 ? A ASN 8 OD1 6 1 Y 1 A ASN 7 ? ND2 ? A ASN 8 ND2 7 1 Y 1 A LYS 29 ? CG ? A LYS 30 CG 8 1 Y 1 A LYS 29 ? CD ? A LYS 30 CD 9 1 Y 1 A LYS 29 ? CE ? A LYS 30 CE 10 1 Y 1 A LYS 29 ? NZ ? A LYS 30 NZ 11 1 Y 1 A GLU 30 ? CD ? A GLU 31 CD 12 1 Y 1 A GLU 30 ? OE1 ? A GLU 31 OE1 13 1 Y 1 A GLU 30 ? OE2 ? A GLU 31 OE2 14 1 Y 1 A LEU 44 ? CG ? A LEU 45 CG 15 1 Y 1 A LEU 44 ? CD1 ? A LEU 45 CD1 16 1 Y 1 A LEU 44 ? CD2 ? A LEU 45 CD2 17 1 Y 1 A LYS 46 ? CG ? A LYS 47 CG 18 1 Y 1 A LYS 46 ? CD ? A LYS 47 CD 19 1 Y 1 A LYS 46 ? CE ? A LYS 47 CE 20 1 Y 1 A LYS 46 ? NZ ? A LYS 47 NZ 21 1 Y 1 A GLU 64 ? CD ? A GLU 65 CD 22 1 Y 1 A GLU 64 ? OE1 ? A GLU 65 OE1 23 1 Y 1 A GLU 64 ? OE2 ? A GLU 65 OE2 24 1 Y 1 A SER 92 ? OG ? A SER 93 OG 25 1 Y 1 A ARG 94 ? NH1 ? A ARG 95 NH1 26 1 Y 1 A ARG 94 ? NH2 ? A ARG 95 NH2 27 1 Y 1 A ARG 145 ? CG ? A ARG 146 CG 28 1 Y 1 A ARG 145 ? CD ? A ARG 146 CD 29 1 Y 1 A ARG 145 ? NE ? A ARG 146 NE 30 1 Y 1 A ARG 145 ? CZ ? A ARG 146 CZ 31 1 Y 1 A ARG 145 ? NH1 ? A ARG 146 NH1 32 1 Y 1 A ARG 145 ? NH2 ? A ARG 146 NH2 33 1 Y 1 A ARG 183 ? NE ? A ARG 184 NE 34 1 Y 1 A ARG 183 ? CZ ? A ARG 184 CZ 35 1 Y 1 A ARG 183 ? NH1 ? A ARG 184 NH1 36 1 Y 1 A ARG 183 ? NH2 ? A ARG 184 NH2 37 1 Y 1 A GLU 189 ? CG ? A GLU 190 CG 38 1 Y 1 A GLU 189 ? CD ? A GLU 190 CD 39 1 Y 1 A GLU 189 ? OE1 ? A GLU 190 OE1 40 1 Y 1 A GLU 189 ? OE2 ? A GLU 190 OE2 41 1 Y 1 A ARG 215 ? CZ ? A ARG 216 CZ 42 1 Y 1 A ARG 215 ? NH1 ? A ARG 216 NH1 43 1 Y 1 A ARG 215 ? NH2 ? A ARG 216 NH2 44 1 Y 1 A LYS 218 ? CD ? A LYS 219 CD 45 1 Y 1 A LYS 218 ? CE ? A LYS 219 CE 46 1 Y 1 A LYS 218 ? NZ ? A LYS 219 NZ 47 1 Y 1 A LYS 280 ? NZ ? A LYS 281 NZ 48 1 Y 1 A GLU 306 ? OE1 ? A GLU 307 OE1 49 1 Y 1 A GLU 306 ? OE2 ? A GLU 307 OE2 50 1 Y 1 A LYS 308 ? NZ ? A LYS 309 NZ 51 1 Y 1 A THR 326 ? OG1 ? A THR 327 OG1 52 1 Y 1 A THR 326 ? CG2 ? A THR 327 CG2 53 1 Y 1 A ARG 328 ? CZ ? A ARG 329 CZ 54 1 Y 1 A ARG 328 ? NH1 ? A ARG 329 NH1 55 1 Y 1 A ARG 328 ? NH2 ? A ARG 329 NH2 56 1 Y 1 A LYS 329 ? CD ? A LYS 330 CD 57 1 Y 1 A LYS 329 ? CE ? A LYS 330 CE 58 1 Y 1 A LYS 329 ? NZ ? A LYS 330 NZ 59 1 Y 1 A VAL 330 ? CG1 ? A VAL 331 CG1 60 1 Y 1 A VAL 330 ? CG2 ? A VAL 331 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASP 290 ? A ASP 291 3 1 Y 1 A GLY 291 ? A GLY 292 4 1 Y 1 A ALA 292 ? A ALA 293 5 1 Y 1 A ARG 293 ? A ARG 294 6 1 Y 1 A PHE 294 ? A PHE 295 7 1 Y 1 A GLY 295 ? A GLY 296 8 1 Y 1 A ARG 296 ? A ARG 297 9 1 Y 1 A LEU 297 ? A LEU 298 10 1 Y 1 A SER 364 ? A SER 365 11 1 Y 1 A LYS 365 ? A LYS 366 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'FORMIC ACID' FMT 4 water HOH #