HEADER TRANSFERASE 29-MAR-10 3MCP TITLE CRYSTAL STRUCTURE OF GLUCOKINASE (BDI_1628) FROM PARABACTEROIDES TITLE 2 DISTASONIS ATCC 8503 AT 3.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOKINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503 / DSM 20701 / NCTC 11152; SOURCE 5 GENE: BDI_1628; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 16-OCT-24 3MCP 1 REMARK REVDAT 4 01-FEB-23 3MCP 1 REMARK SEQADV REVDAT 3 17-JUL-19 3MCP 1 REMARK LINK REVDAT 2 08-NOV-17 3MCP 1 REMARK REVDAT 1 12-MAY-10 3MCP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GLUCOKINASE (BDI_1628) FROM JRNL TITL 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 3.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 3.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.400 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2650 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1770 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3584 ; 0.919 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4318 ; 0.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 3.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;27.812 ;24.369 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;13.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3023 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 533 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1746 ; 0.839 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 739 ; 0.064 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2757 ; 1.722 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 904 ; 2.578 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 827 ; 4.437 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. GLYCEROL (GOL) AND FORMIC ACID FROM THE REMARK 3 CRYSTALLIZATION SOLUTION WERE MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 3MCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97911 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10015 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.748 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : 0.71600 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0000% GLYCEROL, 3.6000M NAFORMATE, REMARK 280 NO BUFFER PH 7.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.29050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.36600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.36600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.93575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.36600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.36600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.64525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.36600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.36600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.93575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.36600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.36600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.64525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.29050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 142.58100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 ALA A 292 REMARK 465 ARG A 293 REMARK 465 PHE A 294 REMARK 465 GLY A 295 REMARK 465 ARG A 296 REMARK 465 LEU A 297 REMARK 465 SER A 364 REMARK 465 LYS A 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 GLU A 64 CD OE1 OE2 REMARK 470 SER A 92 OG REMARK 470 ARG A 94 NH1 NH2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 183 NE CZ NH1 NH2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 ARG A 215 CZ NH1 NH2 REMARK 470 LYS A 218 CD CE NZ REMARK 470 LYS A 280 NZ REMARK 470 GLU A 306 OE1 OE2 REMARK 470 LYS A 308 NZ REMARK 470 THR A 326 OG1 CG2 REMARK 470 ARG A 328 CZ NH1 NH2 REMARK 470 LYS A 329 CD CE NZ REMARK 470 VAL A 330 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 18 -43.90 83.92 REMARK 500 PRO A 63 -73.33 -64.15 REMARK 500 ALA A 68 -178.07 178.80 REMARK 500 ASP A 165 57.95 37.91 REMARK 500 TYR A 187 59.47 -147.50 REMARK 500 PRO A 188 -31.35 -38.22 REMARK 500 SER A 197 173.35 179.20 REMARK 500 ASP A 258 61.09 60.26 REMARK 500 PRO A 324 124.39 -39.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 368 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 400675 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING REMARK 999 OF THE CLONED CONSTRUCT REVEALS A GLYCINE AT POSITION 61 INSTEAD OF REMARK 999 AN ASPARTATE AND A GLUTAMATE AT POSITION 306 INSTEAD OF AN REMARK 999 ASPARTATE. THE GLYCINE AT POSITION 61 AND GLUTAMATE AT POSITION 306 REMARK 999 ARE SUPPORTED BY THE ELECTRON DENSITY. DBREF 3MCP A 1 365 UNP A6LCG6 A6LCG6_PARD8 1 365 SEQADV 3MCP GLY A 0 UNP A6LCG6 EXPRESSION TAG SEQADV 3MCP GLY A 61 UNP A6LCG6 ASP 61 SEE REMARK 999 SEQADV 3MCP GLU A 306 UNP A6LCG6 ASP 306 SEE REMARK 999 SEQRES 1 A 366 GLY MSE MSE TYR THR ASN ASP ASN ARG ILE VAL MSE THR SEQRES 2 A 366 LEU ASP ALA GLY GLY THR ASN PHE VAL PHE SER ALA ILE SEQRES 3 A 366 GLN GLY GLY LYS GLU ILE ALA ASP PRO VAL VAL LEU PRO SEQRES 4 A 366 ALA CYS ALA ASP CYS LEU ASP LYS CYS LEU GLY ASN LEU SEQRES 5 A 366 VAL GLU GLY PHE LYS ALA ILE GLN ALA GLY LEU PRO GLU SEQRES 6 A 366 ALA PRO VAL ALA ILE SER PHE ALA PHE PRO GLY PRO ALA SEQRES 7 A 366 ASP TYR GLN ALA GLY ILE ILE GLY ASP LEU PRO ASN PHE SEQRES 8 A 366 PRO SER PHE ARG GLY GLY VAL ALA LEU GLY PRO PHE LEU SEQRES 9 A 366 GLU ASP ILE PHE GLY ILE PRO VAL PHE ILE ASN ASN ASP SEQRES 10 A 366 GLY SER LEU PHE ALA TYR GLY GLU ALA LEU THR GLY VAL SEQRES 11 A 366 LEU PRO GLU ILE ASN ARG ARG LEU ARG GLU ALA GLY SER SEQRES 12 A 366 THR LYS ARG TYR LYS ASN LEU LEU GLY VAL THR LEU GLY SEQRES 13 A 366 THR GLY PHE GLY ALA GLY VAL VAL ILE ASP GLY GLU LEU SEQRES 14 A 366 LEU ARG GLY ASP ASN ALA ALA GLY GLY TYR VAL TRP CYS SEQRES 15 A 366 LEU ARG ASN LYS LYS TYR PRO GLU TYR ILE VAL GLU GLU SEQRES 16 A 366 SER VAL SER ILE ARG ALA VAL MSE ARG VAL TYR ALA GLU SEQRES 17 A 366 ARG SER GLY ASP ALA GLY ALA ARG THR PRO LYS GLU ILE SEQRES 18 A 366 PHE GLU ILE ALA GLU GLY ILE ARG PRO GLY ASN ARG GLU SEQRES 19 A 366 ALA ALA ILE ALA ALA PHE GLU GLU LEU GLY GLU MSE ALA SEQRES 20 A 366 GLY ASP ALA LEU ALA SER ALA ILE THR LEU ILE ASP GLY SEQRES 21 A 366 LEU ILE VAL ILE GLY GLY GLY LEU SER GLY ALA SER LYS SEQRES 22 A 366 TYR ILE LEU PRO VAL LEU LEU LYS GLU MSE ASN ALA GLN SEQRES 23 A 366 THR GLY MSE MSE ASP GLY ALA ARG PHE GLY ARG LEU GLN SEQRES 24 A 366 LYS GLU VAL TYR ASP LEU ASP GLU GLU LYS SER PHE ALA SEQRES 25 A 366 GLY PHE ALA ARG GLY GLU ALA VAL GLU VAL LEU VAL PRO SEQRES 26 A 366 GLY THR ASN ARG LYS VAL GLY TYR ASP PRO CYS LYS ARG SEQRES 27 A 366 ILE GLY VAL THR PHE SER LYS GLN GLY ALA ASN ARG SER SEQRES 28 A 366 ILE ALA MSE GLY ALA TYR VAL PHE ALA LEU ASN HIS LEU SEQRES 29 A 366 SER LYS MODRES 3MCP MSE A 1 MET SELENOMETHIONINE MODRES 3MCP MSE A 2 MET SELENOMETHIONINE MODRES 3MCP MSE A 11 MET SELENOMETHIONINE MODRES 3MCP MSE A 202 MET SELENOMETHIONINE MODRES 3MCP MSE A 245 MET SELENOMETHIONINE MODRES 3MCP MSE A 282 MET SELENOMETHIONINE MODRES 3MCP MSE A 288 MET SELENOMETHIONINE MODRES 3MCP MSE A 289 MET SELENOMETHIONINE MODRES 3MCP MSE A 353 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 2 8 HET MSE A 11 8 HET MSE A 202 8 HET MSE A 245 8 HET MSE A 282 8 HET MSE A 288 8 HET MSE A 289 8 HET MSE A 353 8 HET GOL A 366 6 HET GOL A 367 6 HET FMT A 368 3 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 FMT C H2 O2 FORMUL 5 HOH *13(H2 O) HELIX 1 1 CYS A 43 ALA A 60 1 18 HELIX 2 2 PHE A 90 ARG A 94 5 5 HELIX 3 3 ALA A 98 GLY A 108 1 11 HELIX 4 4 ASN A 115 THR A 127 1 13 HELIX 5 5 GLY A 128 ALA A 140 1 13 HELIX 6 6 ILE A 191 SER A 195 5 5 HELIX 7 7 SER A 197 SER A 209 1 13 HELIX 8 8 THR A 216 GLU A 225 1 10 HELIX 9 9 ASN A 231 ASP A 258 1 28 HELIX 10 10 GLY A 265 GLY A 269 5 5 HELIX 11 11 ALA A 270 THR A 286 1 17 HELIX 12 12 GLU A 306 GLY A 316 1 11 HELIX 13 13 GLY A 346 LEU A 363 1 18 SHEET 1 A 3 LYS A 29 GLU A 30 0 SHEET 2 A 3 ASN A 19 GLN A 26 -1 N GLN A 26 O LYS A 29 SHEET 3 A 3 VAL A 35 PRO A 38 -1 O VAL A 35 N PHE A 22 SHEET 1 B 5 LYS A 29 GLU A 30 0 SHEET 2 B 5 ASN A 19 GLN A 26 -1 N GLN A 26 O LYS A 29 SHEET 3 B 5 ILE A 9 ASP A 14 -1 N VAL A 10 O ILE A 25 SHEET 4 B 5 ALA A 68 ALA A 72 1 O ALA A 68 N MSE A 11 SHEET 5 B 5 VAL A 111 ASN A 114 1 O PHE A 112 N ILE A 69 SHEET 1 C 2 ALA A 77 ASP A 78 0 SHEET 2 C 2 ILE A 83 ILE A 84 -1 O ILE A 83 N ASP A 78 SHEET 1 D 6 GLU A 167 LEU A 168 0 SHEET 2 D 6 PHE A 158 ILE A 164 -1 N ILE A 164 O GLU A 167 SHEET 3 D 6 ASN A 148 LEU A 154 -1 N GLY A 151 O GLY A 161 SHEET 4 D 6 LEU A 260 GLY A 264 1 O GLY A 264 N LEU A 154 SHEET 5 D 6 ARG A 337 PHE A 342 1 O GLY A 339 N ILE A 261 SHEET 6 D 6 GLU A 300 ASP A 303 1 N GLU A 300 O ILE A 338 SHEET 1 E 2 VAL A 319 LEU A 322 0 SHEET 2 E 2 LYS A 329 TYR A 332 -1 O VAL A 330 N VAL A 321 LINK C MSE A 1 N MSE A 2 1555 1555 1.33 LINK C MSE A 2 N TYR A 3 1555 1555 1.34 LINK C VAL A 10 N MSE A 11 1555 1555 1.33 LINK C MSE A 11 N THR A 12 1555 1555 1.32 LINK C VAL A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N ARG A 203 1555 1555 1.33 LINK C GLU A 244 N MSE A 245 1555 1555 1.34 LINK C MSE A 245 N ALA A 246 1555 1555 1.33 LINK C GLU A 281 N MSE A 282 1555 1555 1.32 LINK C MSE A 282 N ASN A 283 1555 1555 1.34 LINK C GLY A 287 N MSE A 288 1555 1555 1.34 LINK C MSE A 288 N MSE A 289 1555 1555 1.34 LINK C ALA A 352 N MSE A 353 1555 1555 1.33 LINK C MSE A 353 N GLY A 354 1555 1555 1.32 CISPEP 1 GLY A 75 PRO A 76 0 6.06 SITE 1 AC1 1 GLY A 266 SITE 1 AC2 4 GLY A 117 GLY A 159 ALA A 160 TYR A 178 SITE 1 AC3 7 GLU A 132 ILE A 133 ARG A 136 LEU A 304 SITE 2 AC3 7 ASP A 305 THR A 341 LYS A 344 CRYST1 80.732 80.732 142.581 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007014 0.00000 HETATM 1 N MSE A 1 13.545 5.160 47.676 1.00 82.89 N HETATM 2 CA MSE A 1 12.281 4.794 46.974 1.00 82.98 C HETATM 3 C MSE A 1 11.139 4.563 47.976 1.00 83.37 C HETATM 4 O MSE A 1 10.296 3.676 47.778 1.00 83.56 O HETATM 5 CB MSE A 1 12.483 3.521 46.139 1.00 82.88 C HETATM 6 CG MSE A 1 12.668 2.230 46.970 1.00 80.67 C HETATM 7 SE MSE A 1 12.061 0.653 46.006 0.75 76.05 SE HETATM 8 CE MSE A 1 11.833 -0.535 47.513 1.00 79.14 C HETATM 9 N MSE A 2 11.096 5.374 49.031 1.00 83.03 N HETATM 10 CA MSE A 2 10.091 5.201 50.078 1.00 82.42 C HETATM 11 C MSE A 2 8.715 5.797 49.702 1.00 81.78 C HETATM 12 O MSE A 2 8.617 6.952 49.273 1.00 81.58 O HETATM 13 CB MSE A 2 10.590 5.789 51.387 1.00 82.53 C HETATM 14 CG MSE A 2 9.600 5.691 52.496 1.00 82.93 C HETATM 15 SE MSE A 2 10.456 5.386 54.169 0.75 88.34 SE HETATM 16 CE MSE A 2 8.888 5.387 55.341 1.00 82.77 C