HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAR-10 3MCX TITLE CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (BT_2365) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.49 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD SUPERFAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2365; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3MCX 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3MCX 1 REMARK LINK REVDAT 3 25-OCT-17 3MCX 1 REMARK REVDAT 2 13-JUL-11 3MCX 1 VERSN REVDAT 1 19-MAY-10 3MCX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (BT_2365) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.49 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 94819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 314 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 749 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 13.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.932 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3899 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2631 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5325 ; 1.533 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6458 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;36.276 ;24.974 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;11.090 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;11.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4441 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2383 ; 0.703 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 962 ; 0.211 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3867 ; 1.192 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 1.803 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1431 ; 2.792 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 497 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8232 16.2134 18.7244 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: 0.0101 REMARK 3 T33: 0.0090 T12: 0.0024 REMARK 3 T13: 0.0014 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6759 L22: 0.9887 REMARK 3 L33: 0.8134 L12: 0.0679 REMARK 3 L13: -0.0352 L23: -0.2826 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0000 S13: -0.0531 REMARK 3 S21: -0.0244 S22: -0.0030 S23: -0.0723 REMARK 3 S31: 0.0540 S32: 0.0537 S33: 0.0094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4.ACETATE (ACT) AND ZINC (ZN) FROM THE CRYSTALLIZATION SOLUTION REMARK 3 AND GLYCEROL (GOL) FROM THE CRYOPROTECTANT SOLUTION HAVE BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. THE MODELING OF ZN IS REMARK 3 SUPPORTED BY AN ANOMALOUS DIFFERENCE FOURIER MAP. REMARK 4 REMARK 4 3MCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97932,0.97886 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94843 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 28.897 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0000% 2-PROPANOL, 0.2000M ZINC REMARK 280 ACETATE, 0.1M SODIUM CACODYLATE PH 6.5, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.71700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.71700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.58050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.73600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.58050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.73600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.71700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.58050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.73600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.71700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.58050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.73600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A MONOMER AS THE REMARK 300 SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 22 REMARK 465 TRP A 23 REMARK 465 LEU A 24 REMARK 465 ASP A 25 REMARK 465 LEU A 26 REMARK 465 ASN A 27 REMARK 465 THR A 28 REMARK 465 THR A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 VAL A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 GLY A 35 REMARK 465 GLN A 36 REMARK 465 ALA A 37 REMARK 465 ILE A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 GLN A 131 CD OE1 NE2 REMARK 470 LYS A 136 CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLU A 286 CD OE1 OE2 REMARK 470 GLU A 419 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 139 O HOH A 746 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 235 SE MSE A 235 CE -0.430 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 365 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP A 365 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -7.48 83.76 REMARK 500 TYR A 60 -118.15 -113.42 REMARK 500 ASP A 63 -78.22 -153.89 REMARK 500 ALA A 73 -145.33 -100.45 REMARK 500 VAL A 88 -54.44 75.53 REMARK 500 ILE A 104 -56.82 -127.72 REMARK 500 ASP A 167 29.32 -161.48 REMARK 500 ASP A 307 -78.48 -145.31 REMARK 500 ASN A 310 28.04 -147.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 197 OE1 REMARK 620 2 HOH A1235 O 90.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 335 OE2 REMARK 620 2 GLU A 339 OE1 113.8 REMARK 620 3 HIS A 350 ND1 101.4 97.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD1 REMARK 620 2 SER A 413 OG 77.7 REMARK 620 3 HOH A 715 O 167.3 94.3 REMARK 620 4 HOH A1055 O 93.1 81.4 95.4 REMARK 620 5 HOH A1206 O 82.0 97.9 89.6 175.0 REMARK 620 6 HOH A1236 O 97.3 173.6 91.3 95.0 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 14 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396190 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 22-497) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3MCX A 22 497 UNP Q8A577 Q8A577_BACTN 22 497 SEQADV 3MCX GLY A 0 UNP Q8A577 EXPRESSION TAG SEQRES 1 A 477 GLY ASP TRP LEU ASP LEU ASN THR THR SER SER VAL GLU SEQRES 2 A 477 THR GLY GLN ALA ILE VAL THR LEU ASP ASP ALA GLN ILE SEQRES 3 A 477 ALA LEU ASN GLY ILE TYR ARG LEU ALA SER GLY HIS SER SEQRES 4 A 477 TYR TYR GLY ASP ASN TYR TRP TYR TYR GLY ASP CYS ARG SEQRES 5 A 477 ALA ALA ASP VAL GLN ALA ARG ILE THR LYS GLY ASP GLY SEQRES 6 A 477 LYS ARG VAL SER PRO TYR TYR GLU TYR ASN VAL LEU ALA SEQRES 7 A 477 SER ASP ASN LEU ASN ILE VAL LEU PRO TRP ASN THR VAL SEQRES 8 A 477 TYR LYS VAL ILE ARG GLN THR ASN ASN LEU ILE GLN LYS SEQRES 9 A 477 ILE GLU SER GLY SER ILE GLN SER SER ASP THR LYS GLU SEQRES 10 A 477 LEU ASN ARG ILE LYS SER GLU ALA LEU VAL MSE ARG GLY SEQRES 11 A 477 LEU SER LEU PHE ASN LEU THR ARG LEU PHE GLY MSE PRO SEQRES 12 A 477 TYR THR ASN ASP LYS GLY ALA SER LEU GLY VAL PRO ILE SEQRES 13 A 477 GLU THR SER PRO SER ASP PRO THR HIS LYS PRO SER ARG SEQRES 14 A 477 SER THR VAL ALA GLN CYS TYR GLU GLN VAL VAL SER ASP SEQRES 15 A 477 MSE SER ASN ALA LEU SER GLY LEU ARG GLN GLU THR SER SEQRES 16 A 477 ASN GLY TYR ILE ASN TYR TRP ALA ALA GLN ALA LEU LEU SEQRES 17 A 477 SER ARG VAL TYR LEU ASN MSE GLY GLU TYR GLN LYS ALA SEQRES 18 A 477 TYR ASP ALA ALA THR ASP VAL ILE LYS ASN ASN GLY GLY SEQRES 19 A 477 ARG TYR GLN LEU TYR SER TYR GLU GLU TYR PRO ASN VAL SEQRES 20 A 477 TRP GLY GLN ASP PHE GLN SER GLU SER LEU PHE GLU LEU SEQRES 21 A 477 TYR ILE THR LEU SER GLU PRO SER GLY GLY THR GLY GLY SEQRES 22 A 477 GLU GLY ALA PRO MSE VAL TYR ALA ASN GLU ALA THR VAL SEQRES 23 A 477 ASP TRP ASN ASN LEU ILE LEU SER GLU ASP PHE LEU ASN SEQRES 24 A 477 LEU LEU ASN GLU ASP PRO LYS ASP VAL ARG HIS CYS LEU SEQRES 25 A 477 THR LYS GLU SER VAL ILE GLU ASN ASN THR GLY LEU PRO SEQRES 26 A 477 ALA ALA ALA MSE HIS GLU LYS VAL TYR LEU ALA LYS PHE SEQRES 27 A 477 PRO GLY LYS THR GLY ASP ASP PRO LYS THR ASN ASN ILE SEQRES 28 A 477 CYS ILE ILE ARG LEU SER GLU VAL TYR LEU ASN ALA ALA SEQRES 29 A 477 GLU ALA GLY LEU LYS LYS GLY THR ASP ILE GLU GLU ALA SEQRES 30 A 477 GLN GLY TYR LEU ASN ASP ILE ILE SER ARG ARG THR THR SEQRES 31 A 477 ASP THR SER GLN GLN VAL SER THR GLU THR PHE THR LEU SEQRES 32 A 477 ASP ARG ILE LEU LYS GLU ARG ARG LYS GLU LEU VAL GLY SEQRES 33 A 477 GLU GLY GLU VAL PHE TYR ASP TYR LEU ARG ASN GLY LEU SEQRES 34 A 477 ALA ILE GLU ARG LYS GLY SER TRP HIS LEU GLU THR LEU SEQRES 35 A 477 LYS ALA SER ASN ALA GLN LYS ILE GLU ALA THR ASP LEU SEQRES 36 A 477 ARG ILE ALA LEU PRO ILE PRO GLN SER GLU ILE ASP ALA SEQRES 37 A 477 ASN PRO ASN ILE GLN GLN ASN PRO ARG MODRES 3MCX MSE A 148 MET SELENOMETHIONINE MODRES 3MCX MSE A 162 MET SELENOMETHIONINE MODRES 3MCX MSE A 203 MET SELENOMETHIONINE MODRES 3MCX MSE A 235 MET SELENOMETHIONINE MODRES 3MCX MSE A 298 MET SELENOMETHIONINE MODRES 3MCX MSE A 349 MET SELENOMETHIONINE HET MSE A 148 13 HET MSE A 162 8 HET MSE A 203 8 HET MSE A 235 8 HET MSE A 298 8 HET MSE A 349 8 HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET ZN A 4 1 HET ZN A 5 1 HET ZN A 6 1 HET ACT A 7 4 HET ACT A 8 4 HET ACT A 9 4 HET GOL A 10 6 HET GOL A 11 6 HET GOL A 12 12 HET GOL A 13 6 HET GOL A 14 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ZN 6(ZN 2+) FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 11 GOL 5(C3 H8 O3) FORMUL 16 HOH *749(H2 O) HELIX 1 1 THR A 40 GLY A 57 1 18 HELIX 2 2 ASP A 63 ARG A 72 1 10 HELIX 3 3 VAL A 88 GLU A 93 1 6 HELIX 4 4 ILE A 104 SER A 127 1 24 HELIX 5 5 ASP A 134 GLY A 161 1 28 HELIX 6 6 PRO A 163 ASP A 167 5 5 HELIX 7 7 THR A 191 LEU A 207 1 17 HELIX 8 8 SER A 208 LEU A 210 5 3 HELIX 9 9 ASN A 220 MSE A 235 1 16 HELIX 10 10 GLU A 237 ASN A 252 1 16 HELIX 11 11 GLU A 263 VAL A 267 5 5 HELIX 12 12 GLY A 295 TYR A 300 1 6 HELIX 13 13 SER A 314 ASN A 322 1 9 HELIX 14 14 ASP A 327 CYS A 331 5 5 HELIX 15 15 PRO A 345 MSE A 349 5 5 HELIX 16 16 ASP A 365 ASN A 369 5 5 HELIX 17 17 LEU A 376 GLY A 391 1 16 HELIX 18 18 ASP A 393 SER A 406 1 14 HELIX 19 19 ASP A 411 GLN A 415 5 5 HELIX 20 20 THR A 422 VAL A 435 1 14 HELIX 21 21 GLU A 439 ASN A 447 1 9 HELIX 22 22 GLU A 460 SER A 465 1 6 HELIX 23 23 ASP A 474 ALA A 478 5 5 HELIX 24 24 PRO A 482 ASN A 489 1 8 SHEET 1 A 2 VAL A 76 GLN A 77 0 SHEET 2 A 2 ILE A 312 LEU A 313 -1 O ILE A 312 N GLN A 77 SHEET 1 B 2 SER A 276 LEU A 280 0 SHEET 2 B 2 ILE A 371 ARG A 375 -1 O ILE A 373 N PHE A 278 SHEET 1 C 2 THR A 333 LYS A 334 0 SHEET 2 C 2 TYR A 354 LEU A 355 -1 O TYR A 354 N LYS A 334 SHEET 1 D 2 ILE A 451 GLU A 452 0 SHEET 2 D 2 LYS A 469 ILE A 470 -1 O ILE A 470 N ILE A 451 LINK C VAL A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N ARG A 149 1555 1555 1.32 LINK C GLY A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N PRO A 163 1555 1555 1.33 LINK C ASP A 202 N MSE A 203 1555 1555 1.32 LINK C MSE A 203 N SER A 204 1555 1555 1.33 LINK C ASN A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N GLY A 236 1555 1555 1.34 LINK C PRO A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N VAL A 299 1555 1555 1.33 LINK C ALA A 348 N MSE A 349 1555 1555 1.33 LINK C MSE A 349 N HIS A 350 1555 1555 1.34 LINK ZN ZN A 1 OE1 GLU A 197 1555 1555 1.92 LINK ZN ZN A 1 O HOH A1235 1555 1555 1.99 LINK ZN ZN A 2 OE2 GLU A 395 1555 1555 1.92 LINK ZN ZN A 3 OE2 GLU A 335 1555 1555 1.95 LINK ZN ZN A 3 OE1 GLU A 339 1555 1555 2.04 LINK ZN ZN A 3 ND1 HIS A 350 1555 1555 1.97 LINK ZN ZN A 4 OD1 ASP A 403 1555 1555 2.03 LINK ZN ZN A 5 OD1 ASP A 411 1555 1555 2.09 LINK ZN ZN A 5 OG SER A 413 1555 1555 2.31 LINK ZN ZN A 5 O HOH A 715 1555 1555 2.05 LINK ZN ZN A 5 O HOH A1055 1555 1555 2.26 LINK ZN ZN A 5 O HOH A1206 1555 1555 2.17 LINK ZN ZN A 5 O HOH A1236 1555 1555 2.12 LINK ZN ZN A 6 ND1AHIS A 185 1555 1555 1.99 CISPEP 1 GLU A 286 PRO A 287 0 -13.04 SITE 1 AC1 5 ACT A 7 GLU A 126 GLU A 197 HOH A1234 SITE 2 AC1 5 HOH A1235 SITE 1 AC2 3 GOL A 13 GLU A 262 GLU A 395 SITE 1 AC3 4 GLU A 335 GLU A 339 HIS A 350 GLU A 471 SITE 1 AC4 5 ACT A 8 ASP A 403 HOH A 620 HOH A 621 SITE 2 AC4 5 HOH A 623 SITE 1 AC5 6 ASP A 411 SER A 413 HOH A 715 HOH A1055 SITE 2 AC5 6 HOH A1206 HOH A1236 SITE 1 AC6 3 ASP A 182 HIS A 185 HOH A1233 SITE 1 AC7 8 ZN A 1 GLU A 197 GLN A 198 SER A 201 SITE 2 AC7 8 ASN A 205 HOH A 592 HOH A 866 HOH A1224 SITE 1 AC8 6 ZN A 4 ASP A 403 HOH A 623 HOH A 764 SITE 2 AC8 6 HOH A1142 HOH A1183 SITE 1 AC9 3 PHE A 272 HOH A 641 HOH A1092 SITE 1 BC1 8 TRP A 108 TYR A 112 ARG A 116 PRO A 175 SITE 2 BC1 8 GLU A 177 GLU A 485 HOH A 696 HOH A 986 SITE 1 BC2 10 ASP A 84 GLY A 85 LYS A 86 ALA A 98 SITE 2 BC2 10 SER A 99 GLN A 483 HOH A 557 HOH A 875 SITE 3 BC2 10 HOH A 982 HOH A1017 SITE 1 BC3 7 LYS A 82 ARG A 87 ASP A 307 TRP A 308 SITE 2 BC3 7 HOH A 698 HOH A 926 HOH A1095 SITE 1 BC4 8 ZN A 2 TYR A 261 GLU A 262 GLU A 395 SITE 2 BC4 8 SER A 406 THR A 409 THR A 410 HOH A 894 SITE 1 BC5 2 GLU A 351 THR A 473 CRYST1 107.161 147.472 73.434 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013618 0.00000