data_3MDP # _entry.id 3MDP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MDP pdb_00003mdp 10.2210/pdb3mdp/pdb RCSB RCSB058417 ? ? WWPDB D_1000058417 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 402929 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3MDP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a Putative Cyclic nucleotide-binding protein (Gmet_1532) from Geobacter metallireducens GS-15 at 1.90 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3MDP _cell.length_a 95.862 _cell.length_b 95.862 _cell.length_c 35.485 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MDP _symmetry.Int_Tables_number 90 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cyclic nucleotide-binding domain (CNMP-BD) protein' 15481.044 1 ? ? ? ? 2 non-polymer syn 'SUCCINIC ACID' 118.088 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ISPERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNL(MSE)LLLEGGVELFYSNGGAGSAAN STVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLRE(MSE)SENNQALGQVL(MSE)NNVAAAVLARLH ; _entity_poly.pdbx_seq_one_letter_code_can ;GMISPERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVP GAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLARLH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 402929 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ILE n 1 4 SER n 1 5 PRO n 1 6 GLU n 1 7 ARG n 1 8 LEU n 1 9 ARG n 1 10 VAL n 1 11 TYR n 1 12 ARG n 1 13 PHE n 1 14 PHE n 1 15 ALA n 1 16 SER n 1 17 LEU n 1 18 THR n 1 19 ASP n 1 20 GLU n 1 21 GLN n 1 22 LEU n 1 23 LYS n 1 24 ASP n 1 25 ILE n 1 26 ALA n 1 27 LEU n 1 28 ILE n 1 29 SER n 1 30 GLU n 1 31 GLU n 1 32 LYS n 1 33 SER n 1 34 PHE n 1 35 PRO n 1 36 THR n 1 37 GLY n 1 38 SER n 1 39 VAL n 1 40 ILE n 1 41 PHE n 1 42 LYS n 1 43 GLU n 1 44 ASN n 1 45 SER n 1 46 LYS n 1 47 ALA n 1 48 ASP n 1 49 ASN n 1 50 LEU n 1 51 MSE n 1 52 LEU n 1 53 LEU n 1 54 LEU n 1 55 GLU n 1 56 GLY n 1 57 GLY n 1 58 VAL n 1 59 GLU n 1 60 LEU n 1 61 PHE n 1 62 TYR n 1 63 SER n 1 64 ASN n 1 65 GLY n 1 66 GLY n 1 67 ALA n 1 68 GLY n 1 69 SER n 1 70 ALA n 1 71 ALA n 1 72 ASN n 1 73 SER n 1 74 THR n 1 75 VAL n 1 76 CYS n 1 77 SER n 1 78 VAL n 1 79 VAL n 1 80 PRO n 1 81 GLY n 1 82 ALA n 1 83 ILE n 1 84 PHE n 1 85 GLY n 1 86 VAL n 1 87 SER n 1 88 SER n 1 89 LEU n 1 90 ILE n 1 91 LYS n 1 92 PRO n 1 93 TYR n 1 94 HIS n 1 95 TYR n 1 96 THR n 1 97 SER n 1 98 SER n 1 99 ALA n 1 100 ARG n 1 101 ALA n 1 102 THR n 1 103 LYS n 1 104 PRO n 1 105 VAL n 1 106 ARG n 1 107 VAL n 1 108 VAL n 1 109 ASP n 1 110 ILE n 1 111 ASN n 1 112 GLY n 1 113 ALA n 1 114 ARG n 1 115 LEU n 1 116 ARG n 1 117 GLU n 1 118 MSE n 1 119 SER n 1 120 GLU n 1 121 ASN n 1 122 ASN n 1 123 GLN n 1 124 ALA n 1 125 LEU n 1 126 GLY n 1 127 GLN n 1 128 VAL n 1 129 LEU n 1 130 MSE n 1 131 ASN n 1 132 ASN n 1 133 VAL n 1 134 ALA n 1 135 ALA n 1 136 ALA n 1 137 VAL n 1 138 LEU n 1 139 ALA n 1 140 ARG n 1 141 LEU n 1 142 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Gmet_1532 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'GS-15 / ATCC 53774 / DSM 7210' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter metallireducens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269799 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q39VF8_GEOMG _struct_ref.pdbx_db_accession Q39VF8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MISPERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPG AIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLARLH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MDP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q39VF8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 141 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 141 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3MDP _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q39VF8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIN non-polymer . 'SUCCINIC ACID' ? 'C4 H6 O4' 118.088 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3MDP # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10.0000% PEG-6000, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2010-01-24 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97922 1.0 3 0.97898 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97922,0.97898 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3MDP _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 28.520 _reflns.number_obs 13586 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_netI_over_sigmaI 13.290 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 25.266 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 9654 ? 2567 0.814 1.7 ? ? ? ? ? 99.10 1 1 1.97 2.05 9547 ? 2500 0.592 2.3 ? ? ? ? ? 99.80 2 1 2.05 2.14 9176 ? 2392 0.405 3.4 ? ? ? ? ? 99.90 3 1 2.14 2.25 9384 ? 2432 0.316 4.4 ? ? ? ? ? 99.90 4 1 2.25 2.39 9541 ? 2490 0.218 6.4 ? ? ? ? ? 100.00 5 1 2.39 2.58 9892 ? 2550 0.170 8.0 ? ? ? ? ? 100.00 6 1 2.58 2.84 9645 ? 2498 0.121 10.9 ? ? ? ? ? 99.90 7 1 2.84 3.25 9679 ? 2500 0.070 18.3 ? ? ? ? ? 99.90 8 1 3.25 4.08 9503 ? 2450 0.035 32.9 ? ? ? ? ? 99.90 9 1 4.08 28.520 9802 ? 2527 0.025 44.3 ? ? ? ? ? 99.50 10 1 # _refine.entry_id 3MDP _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 28.520 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.870 _refine.ls_number_reflns_obs 13563 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ONE SUCCINIC ACID (SIN) WAS MODELED IN THE PUTATIVE ACTIVE SITE BASED ON THE PRESENCE OF CLEAR AND CONCLUSIVE ELECTRON DENSITY. 5. ONE ETHYLENE GLYCOL (EDO) MOLECULE FROM CRYSTALLIZATION IS MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.181 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.227 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 668 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.268 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.050 _refine.aniso_B[2][2] 0.050 _refine.aniso_B[3][3] -0.090 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.136 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.085 _refine.overall_SU_B 6.211 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 58.14 _refine.B_iso_min 6.56 _refine.occupancy_max 1.00 _refine.occupancy_min 0.22 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1005 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1144 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 28.520 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1101 0.015 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 742 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1497 1.511 1.982 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1815 0.899 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 145 7.160 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 43 31.624 23.023 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 189 13.983 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 9 16.884 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 176 0.078 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1251 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 226 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 704 1.760 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 281 0.450 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1143 2.931 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 397 3.690 5.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 354 5.445 8.000 ? ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.950 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.590 _refine_ls_shell.number_reflns_R_work 924 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.R_factor_R_free 0.320 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 970 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MDP _struct.title ;Crystal structure of a Putative Cyclic nucleotide-binding protein (Gmet_1532) from Geobacter metallireducens GS-15 at 1.90 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Cyclic nucleotide-binding domain, double-stranded beta-helix fold, Nucleotide Binding Protein ; _struct_keywords.pdbx_keywords 'Nucleotide Binding Protein' _struct_keywords.entry_id 3MDP # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 6 ? VAL A 10 ? GLU A 5 VAL A 9 5 ? 5 HELX_P HELX_P2 2 TYR A 11 ? SER A 16 ? TYR A 10 SER A 15 1 ? 6 HELX_P HELX_P3 3 THR A 18 ? ILE A 28 ? THR A 17 ILE A 27 1 ? 11 HELX_P HELX_P4 4 GLY A 85 ? LEU A 89 ? GLY A 84 LEU A 88 5 ? 5 HELX_P HELX_P5 5 GLY A 112 ? ASN A 122 ? GLY A 111 ASN A 121 1 ? 11 HELX_P HELX_P6 6 ASN A 122 ? ARG A 140 ? ASN A 121 ARG A 139 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A ILE 3 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale2 covale both ? A LEU 50 C ? ? ? 1_555 A MSE 51 N A ? A LEU 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? A LEU 50 C ? ? ? 1_555 A MSE 51 N B ? A LEU 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MSE 51 C A ? ? 1_555 A LEU 52 N ? ? A MSE 50 A LEU 51 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A MSE 51 C B ? ? 1_555 A LEU 52 N ? ? A MSE 50 A LEU 51 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale6 covale both ? A GLU 117 C ? ? ? 1_555 A MSE 118 N ? ? A GLU 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A MSE 118 C ? ? ? 1_555 A SER 119 N ? ? A MSE 117 A SER 118 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A LEU 129 C ? ? ? 1_555 A MSE 130 N ? ? A LEU 128 A MSE 129 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale9 covale both ? A MSE 130 C ? ? ? 1_555 A ASN 131 N ? ? A MSE 129 A ASN 130 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 91 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 90 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 92 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 91 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 29 ? PHE A 34 ? SER A 28 PHE A 33 A 2 VAL A 105 ? ASN A 111 ? VAL A 104 ASN A 110 A 3 ASN A 49 ? GLU A 55 ? ASN A 48 GLU A 54 A 4 ILE A 83 ? PHE A 84 ? ILE A 82 PHE A 83 B 1 VAL A 39 ? PHE A 41 ? VAL A 38 PHE A 40 B 2 SER A 98 ? ALA A 101 ? SER A 97 ALA A 100 B 3 VAL A 58 ? PHE A 61 ? VAL A 57 PHE A 60 B 4 THR A 74 ? VAL A 78 ? THR A 73 VAL A 77 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 30 ? N GLU A 29 O ASP A 109 ? O ASP A 108 A 2 3 O ILE A 110 ? O ILE A 109 N LEU A 50 ? N LEU A 49 A 3 4 N MSE A 51 ? N MSE A 50 O PHE A 84 ? O PHE A 83 B 1 2 N PHE A 41 ? N PHE A 40 O ALA A 99 ? O ALA A 98 B 2 3 O SER A 98 ? O SER A 97 N PHE A 61 ? N PHE A 60 B 3 4 N LEU A 60 ? N LEU A 59 O VAL A 75 ? O VAL A 74 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SIN 142 ? 11 'BINDING SITE FOR RESIDUE SIN A 142' AC2 Software A EDO 143 ? 8 'BINDING SITE FOR RESIDUE EDO A 143' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 PHE A 41 ? PHE A 40 . ? 1_555 ? 2 AC1 11 LEU A 60 ? LEU A 59 . ? 1_555 ? 3 AC1 11 PHE A 84 ? PHE A 83 . ? 1_555 ? 4 AC1 11 GLY A 85 ? GLY A 84 . ? 1_555 ? 5 AC1 11 VAL A 86 ? VAL A 85 . ? 1_555 ? 6 AC1 11 SER A 87 ? SER A 86 . ? 1_555 ? 7 AC1 11 THR A 96 ? THR A 95 . ? 1_555 ? 8 AC1 11 SER A 97 ? SER A 96 . ? 1_555 ? 9 AC1 11 LEU A 138 ? LEU A 137 . ? 8_666 ? 10 AC1 11 ARG A 140 ? ARG A 139 . ? 1_555 ? 11 AC1 11 HOH D . ? HOH A 161 . ? 1_555 ? 12 AC2 8 ILE A 28 ? ILE A 27 . ? 1_555 ? 13 AC2 8 SER A 29 ? SER A 28 . ? 1_555 ? 14 AC2 8 GLU A 30 ? GLU A 29 . ? 1_555 ? 15 AC2 8 LYS A 32 ? LYS A 31 . ? 1_555 ? 16 AC2 8 ASN A 49 ? ASN A 48 . ? 1_555 ? 17 AC2 8 ASP A 109 ? ASP A 108 . ? 1_555 ? 18 AC2 8 ASN A 111 ? ASN A 110 . ? 1_555 ? 19 AC2 8 HOH D . ? HOH A 199 . ? 1_555 ? # _atom_sites.entry_id 3MDP _atom_sites.fract_transf_matrix[1][1] 0.010432 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010432 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028181 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ILE 3 2 2 ILE ILE A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 ARG 7 6 6 ARG ARG A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 PHE 14 13 13 PHE PHE A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 LYS 32 31 31 LYS LYS A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 PHE 41 40 40 PHE PHE A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 ASN 49 48 48 ASN ASN A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 MSE 51 50 50 MSE MSE A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 PHE 61 60 60 PHE PHE A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 SER 63 62 62 SER SER A . n A 1 64 ASN 64 63 ? ? ? A . n A 1 65 GLY 65 64 ? ? ? A . n A 1 66 GLY 66 65 ? ? ? A . n A 1 67 ALA 67 66 ? ? ? A . n A 1 68 GLY 68 67 ? ? ? A . n A 1 69 SER 69 68 ? ? ? A . n A 1 70 ALA 70 69 ? ? ? A . n A 1 71 ALA 71 70 ? ? ? A . n A 1 72 ASN 72 71 ? ? ? A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 CYS 76 75 75 CYS CYS A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 PRO 80 79 79 PRO PRO A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 GLY 85 84 84 GLY GLY A . n A 1 86 VAL 86 85 85 VAL VAL A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 LYS 91 90 90 LYS LYS A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 TYR 95 94 94 TYR TYR A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 THR 102 101 101 THR THR A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 VAL 107 106 106 VAL VAL A . n A 1 108 VAL 108 107 107 VAL VAL A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 ASN 111 110 110 ASN ASN A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 ARG 116 115 115 ARG ARG A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 MSE 118 117 117 MSE MSE A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 ASN 122 121 121 ASN ASN A . n A 1 123 GLN 123 122 122 GLN GLN A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 GLN 127 126 126 GLN GLN A . n A 1 128 VAL 128 127 127 VAL VAL A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 MSE 130 129 129 MSE MSE A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 ASN 132 131 131 ASN ASN A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ALA 136 135 135 ALA ALA A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 ALA 139 138 138 ALA ALA A . n A 1 140 ARG 140 139 139 ARG ARG A . n A 1 141 LEU 141 140 140 LEU LEU A . n A 1 142 HIS 142 141 141 HIS HIS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIN 1 142 1 SIN SIN A . C 3 EDO 1 143 2 EDO EDO A . D 4 HOH 1 144 3 HOH HOH A . D 4 HOH 2 145 4 HOH HOH A . D 4 HOH 3 146 5 HOH HOH A . D 4 HOH 4 147 6 HOH HOH A . D 4 HOH 5 148 7 HOH HOH A . D 4 HOH 6 149 8 HOH HOH A . D 4 HOH 7 150 9 HOH HOH A . D 4 HOH 8 151 10 HOH HOH A . D 4 HOH 9 152 11 HOH HOH A . D 4 HOH 10 153 12 HOH HOH A . D 4 HOH 11 154 13 HOH HOH A . D 4 HOH 12 155 14 HOH HOH A . D 4 HOH 13 156 15 HOH HOH A . D 4 HOH 14 157 16 HOH HOH A . D 4 HOH 15 158 17 HOH HOH A . D 4 HOH 16 159 18 HOH HOH A . D 4 HOH 17 160 19 HOH HOH A . D 4 HOH 18 161 20 HOH HOH A . D 4 HOH 19 162 21 HOH HOH A . D 4 HOH 20 163 22 HOH HOH A . D 4 HOH 21 164 23 HOH HOH A . D 4 HOH 22 165 24 HOH HOH A . D 4 HOH 23 166 25 HOH HOH A . D 4 HOH 24 167 26 HOH HOH A . D 4 HOH 25 168 27 HOH HOH A . D 4 HOH 26 169 28 HOH HOH A . D 4 HOH 27 170 29 HOH HOH A . D 4 HOH 28 171 30 HOH HOH A . D 4 HOH 29 172 31 HOH HOH A . D 4 HOH 30 173 32 HOH HOH A . D 4 HOH 31 174 33 HOH HOH A . D 4 HOH 32 175 34 HOH HOH A . D 4 HOH 33 176 35 HOH HOH A . D 4 HOH 34 177 36 HOH HOH A . D 4 HOH 35 178 37 HOH HOH A . D 4 HOH 36 179 38 HOH HOH A . D 4 HOH 37 180 39 HOH HOH A . D 4 HOH 38 181 40 HOH HOH A . D 4 HOH 39 182 41 HOH HOH A . D 4 HOH 40 183 42 HOH HOH A . D 4 HOH 41 184 43 HOH HOH A . D 4 HOH 42 185 44 HOH HOH A . D 4 HOH 43 186 45 HOH HOH A . D 4 HOH 44 187 46 HOH HOH A . D 4 HOH 45 188 47 HOH HOH A . D 4 HOH 46 189 48 HOH HOH A . D 4 HOH 47 190 49 HOH HOH A . D 4 HOH 48 191 50 HOH HOH A . D 4 HOH 49 192 51 HOH HOH A . D 4 HOH 50 193 52 HOH HOH A . D 4 HOH 51 194 53 HOH HOH A . D 4 HOH 52 195 54 HOH HOH A . D 4 HOH 53 196 55 HOH HOH A . D 4 HOH 54 197 56 HOH HOH A . D 4 HOH 55 198 57 HOH HOH A . D 4 HOH 56 199 58 HOH HOH A . D 4 HOH 57 200 59 HOH HOH A . D 4 HOH 58 201 60 HOH HOH A . D 4 HOH 59 202 61 HOH HOH A . D 4 HOH 60 203 62 HOH HOH A . D 4 HOH 61 204 63 HOH HOH A . D 4 HOH 62 205 64 HOH HOH A . D 4 HOH 63 206 65 HOH HOH A . D 4 HOH 64 207 66 HOH HOH A . D 4 HOH 65 208 67 HOH HOH A . D 4 HOH 66 209 68 HOH HOH A . D 4 HOH 67 210 69 HOH HOH A . D 4 HOH 68 211 70 HOH HOH A . D 4 HOH 69 212 71 HOH HOH A . D 4 HOH 70 213 72 HOH HOH A . D 4 HOH 71 214 73 HOH HOH A . D 4 HOH 72 215 74 HOH HOH A . D 4 HOH 73 216 75 HOH HOH A . D 4 HOH 74 217 76 HOH HOH A . D 4 HOH 75 218 77 HOH HOH A . D 4 HOH 76 219 78 HOH HOH A . D 4 HOH 77 220 79 HOH HOH A . D 4 HOH 78 221 80 HOH HOH A . D 4 HOH 79 222 81 HOH HOH A . D 4 HOH 80 223 82 HOH HOH A . D 4 HOH 81 224 83 HOH HOH A . D 4 HOH 82 225 84 HOH HOH A . D 4 HOH 83 226 85 HOH HOH A . D 4 HOH 84 227 86 HOH HOH A . D 4 HOH 85 228 87 HOH HOH A . D 4 HOH 86 229 88 HOH HOH A . D 4 HOH 87 230 89 HOH HOH A . D 4 HOH 88 231 90 HOH HOH A . D 4 HOH 89 232 91 HOH HOH A . D 4 HOH 90 233 92 HOH HOH A . D 4 HOH 91 234 93 HOH HOH A . D 4 HOH 92 235 94 HOH HOH A . D 4 HOH 93 236 95 HOH HOH A . D 4 HOH 94 237 96 HOH HOH A . D 4 HOH 95 238 97 HOH HOH A . D 4 HOH 96 239 98 HOH HOH A . D 4 HOH 97 240 99 HOH HOH A . D 4 HOH 98 241 100 HOH HOH A . D 4 HOH 99 242 101 HOH HOH A . D 4 HOH 100 243 102 HOH HOH A . D 4 HOH 101 244 103 HOH HOH A . D 4 HOH 102 245 104 HOH HOH A . D 4 HOH 103 246 105 HOH HOH A . D 4 HOH 104 247 106 HOH HOH A . D 4 HOH 105 248 107 HOH HOH A . D 4 HOH 106 249 108 HOH HOH A . D 4 HOH 107 250 109 HOH HOH A . D 4 HOH 108 251 110 HOH HOH A . D 4 HOH 109 252 111 HOH HOH A . D 4 HOH 110 253 112 HOH HOH A . D 4 HOH 111 254 113 HOH HOH A . D 4 HOH 112 255 114 HOH HOH A . D 4 HOH 113 256 115 HOH HOH A . D 4 HOH 114 257 116 HOH HOH A . D 4 HOH 115 258 117 HOH HOH A . D 4 HOH 116 259 118 HOH HOH A . D 4 HOH 117 260 119 HOH HOH A . D 4 HOH 118 261 120 HOH HOH A . D 4 HOH 119 262 121 HOH HOH A . D 4 HOH 120 263 122 HOH HOH A . D 4 HOH 121 264 123 HOH HOH A . D 4 HOH 122 265 124 HOH HOH A . D 4 HOH 123 266 125 HOH HOH A . D 4 HOH 124 267 126 HOH HOH A . D 4 HOH 125 268 127 HOH HOH A . D 4 HOH 126 269 128 HOH HOH A . D 4 HOH 127 270 129 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 51 A MSE 50 ? MET SELENOMETHIONINE 3 A MSE 118 A MSE 117 ? MET SELENOMETHIONINE 4 A MSE 130 A MSE 129 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2980 ? 1 MORE -2 ? 1 'SSA (A^2)' 12430 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 95.8620000000 -1.0000000000 0.0000000000 0.0000000000 95.8620000000 0.0000000000 0.0000000000 -1.0000000000 35.4850000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 57.7594 19.3077 8.5474 0.0828 0.0406 0.0345 -0.0286 -0.0365 0.0149 2.3998 2.4210 1.5043 0.5974 -0.1004 -0.3682 0.0249 -0.0631 0.0382 0.0813 -0.0673 0.0169 -0.2394 0.0677 0.0659 'X-RAY DIFFRACTION' 2 ? refined 60.9139 22.0603 14.3179 0.0607 0.0346 0.0176 -0.0241 -0.0247 0.0103 1.7788 1.9316 1.2359 1.0602 0.3171 0.4388 0.0899 -0.0440 -0.0459 -0.0658 0.0192 -0.0671 0.0391 0.0841 0.0494 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 62 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 72 A 141 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3MDP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 75 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 75 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.696 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.116 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A SER 3 ? ? N A PRO 4 ? ? CA A PRO 4 ? ? 140.68 119.30 21.38 1.50 Y 2 1 C A SER 3 ? ? N A PRO 4 ? ? CD A PRO 4 ? ? 108.20 128.40 -20.20 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -114.30 70.02 2 1 ASN A 43 ? ? 80.60 -7.14 3 1 CYS A 75 ? ? -171.00 143.54 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 3 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 4 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -148.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 2 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 2 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 2 CE 4 1 Y 1 A SER 3 ? OG ? A SER 4 OG 5 1 Y 1 A LYS 22 ? CG ? A LYS 23 CG 6 1 Y 1 A LYS 22 ? CD ? A LYS 23 CD 7 1 Y 1 A LYS 22 ? CE ? A LYS 23 CE 8 1 Y 1 A LYS 22 ? NZ ? A LYS 23 NZ 9 1 Y 1 A SER 72 ? OG ? A SER 73 OG 10 1 Y 1 A GLU 119 ? CD ? A GLU 120 CD 11 1 Y 1 A GLU 119 ? OE1 ? A GLU 120 OE1 12 1 Y 1 A GLU 119 ? OE2 ? A GLU 120 OE2 13 1 Y 1 A GLN 126 ? CD ? A GLN 127 CD 14 1 Y 1 A GLN 126 ? OE1 ? A GLN 127 OE1 15 1 Y 1 A GLN 126 ? NE2 ? A GLN 127 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 63 ? A ASN 64 3 1 Y 1 A GLY 64 ? A GLY 65 4 1 Y 1 A GLY 65 ? A GLY 66 5 1 Y 1 A ALA 66 ? A ALA 67 6 1 Y 1 A GLY 67 ? A GLY 68 7 1 Y 1 A SER 68 ? A SER 69 8 1 Y 1 A ALA 69 ? A ALA 70 9 1 Y 1 A ALA 70 ? A ALA 71 10 1 Y 1 A ASN 71 ? A ASN 72 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SUCCINIC ACID' SIN 3 1,2-ETHANEDIOL EDO 4 water HOH #