HEADER HYDROLASE 31-MAR-10 3MDX TITLE CRYSTAL STRUCTURE OF DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE TITLE 2 FROM BRUCELLA MELITENSIS, RHOMBOHEDRAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: DUT, BAB1_1687; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE, HYDROLASE, METAL- KEYWDS 2 BINDING, NUCLEOTIDE METABOLISM, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 06-SEP-23 3MDX 1 REMARK SEQADV REVDAT 1 21-APR-10 3MDX 0 JRNL AUTH J.ABENDROTH,A.S.GARDBERG,B.STAKER JRNL TITL CRYSTAL STRUCTURE OF DEOXYURIDINE 5-TRIPHOSPHATE JRNL TITL 2 NUCLEOTIDOHYDROLASE FROM BRUCELLA MELITENSIS, RHOMBOHEDRAL JRNL TITL 3 CRYSTAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1097 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 765 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1496 ; 1.683 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1864 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 7.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;29.934 ;22.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;10.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1248 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 221 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 707 ; 1.091 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 291 ; 0.325 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 1.856 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 390 ; 2.664 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 352 ; 4.233 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5420 -5.7680 3.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0914 REMARK 3 T33: 0.1211 T12: 0.0461 REMARK 3 T13: 0.0958 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.5275 L22: 1.4641 REMARK 3 L33: 0.8375 L12: -0.3829 REMARK 3 L13: -0.5398 L23: 0.1972 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: -0.0646 S13: 0.0484 REMARK 3 S21: 0.1725 S22: 0.0684 S23: 0.2500 REMARK 3 S31: -0.1332 S32: -0.1791 S33: -0.1566 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3330 -6.8340 -15.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0887 REMARK 3 T33: 0.1202 T12: 0.0164 REMARK 3 T13: 0.0266 T23: 0.0870 REMARK 3 L TENSOR REMARK 3 L11: 0.4785 L22: 2.6503 REMARK 3 L33: 1.9752 L12: -0.9251 REMARK 3 L13: 1.1692 L23: -0.5992 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.0458 S13: 0.0108 REMARK 3 S21: -0.1729 S22: 0.1650 S23: 0.1953 REMARK 3 S31: -0.1408 S32: -0.2396 S33: -0.1935 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1080 -9.9690 -4.7920 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.0601 REMARK 3 T33: 0.0751 T12: 0.0095 REMARK 3 T13: 0.0327 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.4174 L22: 0.8370 REMARK 3 L33: 0.7998 L12: -0.1150 REMARK 3 L13: -0.1033 L23: 0.3516 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: -0.0514 S13: 0.0834 REMARK 3 S21: 0.0036 S22: 0.0655 S23: 0.0453 REMARK 3 S31: -0.0385 S32: -0.0635 S33: -0.1334 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8150 -11.0850 -14.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.1166 REMARK 3 T33: 0.1264 T12: -0.0120 REMARK 3 T13: 0.0181 T23: 0.0937 REMARK 3 L TENSOR REMARK 3 L11: 2.8182 L22: 0.1031 REMARK 3 L33: 3.5030 L12: -1.5805 REMARK 3 L13: -0.7458 L23: 0.6411 REMARK 3 S TENSOR REMARK 3 S11: 0.1589 S12: -0.1203 S13: 0.0121 REMARK 3 S21: -0.0835 S22: 0.0464 S23: 0.0810 REMARK 3 S31: 0.1646 S32: -0.5716 S33: -0.2053 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2700 -18.4720 6.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.0578 T22: 0.0708 REMARK 3 T33: 0.0546 T12: -0.0022 REMARK 3 T13: -0.0314 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.8943 L22: 0.5930 REMARK 3 L33: 0.8279 L12: -0.2055 REMARK 3 L13: 0.4096 L23: -0.1648 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.1650 S13: 0.0024 REMARK 3 S21: 0.1760 S22: 0.0963 S23: -0.0989 REMARK 3 S31: -0.0268 S32: 0.0022 S33: -0.0795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3MDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29143 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MBQ, ORTHORHOMBIC CRYSTAL FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MD PACT SCREEN, E12: 20% PEG 3350, REMARK 280 200MM NA MALONATE, BRABA.10050.A AT 9.7MG/ML, PH 7.40, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.59527 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.96333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 33.94000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.59527 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.96333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 33.94000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.59527 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.96333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.19054 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 63.92667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.19054 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 63.92667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.19054 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 63.92667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 33.94000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -58.78580 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 67.88000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 284 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 ILE A 141 REMARK 465 SER A 142 REMARK 465 GLU A 143 REMARK 465 THR A 144 REMARK 465 ALA A 145 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 THR A 154 REMARK 465 GLY A 155 REMARK 465 THR A 156 REMARK 465 ALA A 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 49.68 -101.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 139 LYS A 140 136.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MBQ RELATED DB: PDB REMARK 900 ORTHORHOMBIC CRYSTAL FORM REMARK 900 RELATED ID: BRABA.10050.A RELATED DB: TARGETDB DBREF 3MDX A 1 157 UNP Q2YRG4 DUT_BRUA2 1 157 SEQADV 3MDX MET A -20 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX ALA A -19 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX HIS A -18 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX HIS A -17 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX HIS A -16 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX HIS A -15 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX HIS A -14 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX HIS A -13 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX MET A -12 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX GLY A -11 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX THR A -10 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX LEU A -9 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX GLU A -8 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX ALA A -7 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX GLN A -6 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX THR A -5 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX GLN A -4 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX GLY A -3 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX PRO A -2 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX GLY A -1 UNP Q2YRG4 EXPRESSION TAG SEQADV 3MDX SER A 0 UNP Q2YRG4 EXPRESSION TAG SEQRES 1 A 178 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 178 ALA GLN THR GLN GLY PRO GLY SER MET THR ALA ALA SER SEQRES 3 A 178 SER SER ALA PRO THR LEU GLY ILE ILE ARG LEU GLU HIS SEQRES 4 A 178 ALA LYS GLY LEU ASP LEU PRO ALA TYR GLU THR ALA GLY SEQRES 5 A 178 SER ALA GLY MET ASP LEU ARG ALA ALA VAL ALA GLU ASP SEQRES 6 A 178 ARG GLN ILE VAL LEU LEU PRO GLY ARG ARG THR LEU VAL SEQRES 7 A 178 PRO THR GLY LEU ILE LEU GLU ILE PRO GLN GLY TYR GLU SEQRES 8 A 178 VAL GLN ILE ARG PRO ARG SER GLY LEU ALA PHE LYS ASN SEQRES 9 A 178 GLY ILE THR CYS LEU ASN THR PRO GLY THR ILE ASP SER SEQRES 10 A 178 ASP TYR ARG GLY GLU VAL LYS VAL LEU LEU ILE ASN LEU SEQRES 11 A 178 GLY ASP ASP ASP PHE ARG ILE GLU ARG GLY MET ARG ILE SEQRES 12 A 178 ALA GLN ALA VAL PHE ALA PRO VAL ILE GLN PRO LYS ILE SEQRES 13 A 178 GLU GLU ARG ALA LYS ILE SER GLU THR ALA ARG GLY ALA SEQRES 14 A 178 GLY GLY PHE GLY SER THR GLY THR ALA HET EDO A 202 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *181(H2 O) HELIX 1 1 GLU A 17 LYS A 20 5 4 HELIX 2 2 ARG A 76 GLY A 84 1 9 SHEET 1 A 4 GLY A 12 ARG A 15 0 SHEET 2 A 4 ARG A 54 GLU A 64 -1 O GLU A 64 N GLY A 12 SHEET 3 A 4 GLU A 101 ASN A 108 -1 O VAL A 102 N LEU A 61 SHEET 4 A 4 ILE A 85 CYS A 87 -1 N THR A 86 O ILE A 107 SHEET 1 B 4 MET A 35 ARG A 38 0 SHEET 2 B 4 ARG A 121 PRO A 129 -1 O ILE A 122 N LEU A 37 SHEET 3 B 4 TYR A 69 ARG A 74 -1 N ARG A 74 O GLN A 124 SHEET 4 B 4 GLY A 92 ILE A 94 -1 O ILE A 94 N VAL A 71 SHEET 1 C 2 ILE A 47 LEU A 49 0 SHEET 2 C 2 PHE A 114 ILE A 116 -1 O PHE A 114 N LEU A 49 CISPEP 1 THR A 90 PRO A 91 0 -11.66 SITE 1 AC1 8 ILE A 73 SER A 77 ASN A 89 GLY A 92 SITE 2 AC1 8 LYS A 103 GLY A 149 PHE A 151 HOH A 194 CRYST1 67.880 67.880 95.890 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014732 0.008505 0.000000 0.00000 SCALE2 0.000000 0.017011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010429 0.00000