HEADER HYDROLASE 01-APR-10 3MF7 TITLE CRYSTAL STRUCTURE OF (R)-OXIRANE-2-CARBOXYLATE INHIBITED CIS-CAAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIS-3-CHLOROACRYLIC ACID DEHALOGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-118; COMPND 5 EC: 3.8.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEFORM BACTERIUM; SOURCE 3 ORGANISM_TAXID: 1728; SOURCE 4 GENE: CIS-CAAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3 KEYWDS BETA-ALPHA-BETA MOTIF, TAUTOMERASE, DEHALOGENASE, CIS-3-CHLOROACRYLIC KEYWDS 2 ACID DEHALOGENASE, ISOMERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,H.SERRANO,S.R.ERNST,W.H.JOHNSON JR.,M.L.HACKERT,C.P.WHITMAN REVDAT 4 06-SEP-23 3MF7 1 REMARK LINK REVDAT 3 08-NOV-17 3MF7 1 REMARK REVDAT 2 02-FEB-11 3MF7 1 JRNL REVDAT 1 12-JAN-11 3MF7 0 JRNL AUTH Y.GUO,H.SERRANO,W.H.JOHNSON,S.ERNST,M.L.HACKERT,C.P.WHITMAN JRNL TITL CRYSTAL STRUCTURES OF NATIVE AND INACTIVATED JRNL TITL 2 CIS-3-CHLOROACRYLIC ACID DEHALOGENASE: IMPLICATIONS FOR THE JRNL TITL 3 CATALYTIC AND INACTIVATION MECHANISMS. JRNL REF BIOORG.CHEM. V. 39 1 2011 JRNL REFN ISSN 0045-2068 JRNL PMID 21074239 JRNL DOI 10.1016/J.BIOORG.2010.10.001 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 17952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 935 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1251 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.282 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 932 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1259 ; 1.289 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 5.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;38.679 ;23.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 147 ;14.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.029 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 137 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 720 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 401 ; 0.270 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 612 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 90 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 596 ; 0.864 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 922 ; 1.282 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 372 ; 2.281 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 337 ; 3.380 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BLUE MAX-FLUX OPTICAL SYSTEM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR REMARK 200 STARTING MODEL: PDB ENTRY 3MF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THREE MICRO LITER OF 15.6MG/ML CIS REMARK 280 -CAAD PROTEIN SAMPLE MIXED WITH THREE MICRO LITER REMARK 280 CRYSTALLIZATION SOLUTION: 0.125 M CACL2, 0.07 M SODIUM ACETATE REMARK 280 BUFFER, 12.5% ISOPROPANOL, HANGING DROP, TEMPERATURE 298K, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.39150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 48.39150 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 48.39150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 48.39150 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 48.39150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 48.39150 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 48.39150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 48.39150 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 48.39150 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 48.39150 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 48.39150 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 48.39150 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 48.39150 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 48.39150 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 48.39150 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 48.39150 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 48.39150 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 48.39150 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 48.39150 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 48.39150 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 48.39150 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 48.39150 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 48.39150 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 48.39150 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 48.39150 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 48.39150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 96.78300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 96.78300 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 96.78300 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 96.78300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 243 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 119 REMARK 465 PRO A 120 REMARK 465 GLN A 121 REMARK 465 PRO A 122 REMARK 465 GLY A 123 REMARK 465 HIS A 124 REMARK 465 GLU A 125 REMARK 465 GLY A 126 REMARK 465 GLU A 127 REMARK 465 TRP A 128 REMARK 465 PHE A 129 REMARK 465 ASP A 130 REMARK 465 ASN A 131 REMARK 465 LEU A 132 REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 ASP A 135 REMARK 465 GLU A 136 REMARK 465 ARG A 137 REMARK 465 ALA A 138 REMARK 465 PHE A 139 REMARK 465 MET A 140 REMARK 465 GLU A 141 REMARK 465 THR A 142 REMARK 465 ASN A 143 REMARK 465 VAL A 144 REMARK 465 ASP A 145 REMARK 465 VAL A 146 REMARK 465 SER A 147 REMARK 465 ARG A 148 REMARK 465 THR A 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 118 CG CD1 CD2 CE1 CE2 CZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 115 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 PHE A 118 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 110 O PHE A 118 2.03 REMARK 500 OE1 GLU A 114 CD ARG A 117 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PR4 A 1 C VAL A 2 N 0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 115 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 117 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 117 O - C - N ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 -1.63 72.40 REMARK 500 PHE A 37 -68.31 -105.04 REMARK 500 ARG A 117 -148.91 -94.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PR4 A 1 -10.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MF8 RELATED DB: PDB DBREF 3MF7 A 1 149 UNP Q6VPE5 Q6VPE5_9CORY 2 150 SEQRES 1 A 149 PR4 VAL TYR MET VAL TYR VAL SER GLN ASP ARG LEU THR SEQRES 2 A 149 PRO SER ALA LYS HIS ALA VAL ALA LYS ALA ILE THR ASP SEQRES 3 A 149 ALA HIS ARG GLY LEU THR GLY THR GLN HIS PHE LEU ALA SEQRES 4 A 149 GLN VAL ASN PHE GLN GLU GLN PRO ALA GLY ASN VAL PHE SEQRES 5 A 149 LEU GLY GLY VAL GLN GLN GLY GLY ASP THR ILE PHE VAL SEQRES 6 A 149 HIS GLY LEU HIS ARG GLU GLY ARG SER ALA ASP LEU LYS SEQRES 7 A 149 GLY GLN LEU ALA GLN ARG ILE VAL ASP ASP VAL SER VAL SEQRES 8 A 149 ALA ALA GLU ILE ASP ARG LYS HIS ILE TRP VAL TYR PHE SEQRES 9 A 149 GLY GLU MET PRO ALA GLN GLN MET VAL GLU TYR GLY ARG SEQRES 10 A 149 PHE LEU PRO GLN PRO GLY HIS GLU GLY GLU TRP PHE ASP SEQRES 11 A 149 ASN LEU SER SER ASP GLU ARG ALA PHE MET GLU THR ASN SEQRES 12 A 149 VAL ASP VAL SER ARG THR MODRES 3MF7 PR4 A 1 PRO HET PR4 A 1 13 HETNAM PR4 1-[(2R)-2-CARBOXY-2-HYDROXYETHYL]-L-PROLINE FORMUL 1 PR4 C8 H13 N O5 FORMUL 2 HOH *117(H2 O) HELIX 1 1 THR A 13 LEU A 31 1 19 HELIX 2 2 SER A 74 ALA A 93 1 20 HELIX 3 3 ASP A 96 LYS A 98 5 3 HELIX 4 4 PRO A 108 MET A 112 5 5 SHEET 1 A 4 GLN A 40 GLN A 46 0 SHEET 2 A 4 VAL A 2 SER A 8 1 N TYR A 3 O ASN A 42 SHEET 3 A 4 ILE A 63 ARG A 70 -1 O LEU A 68 N VAL A 2 SHEET 4 A 4 ILE A 100 MET A 107 1 O GLY A 105 N HIS A 69 SHEET 1 B 2 PHE A 52 LEU A 53 0 SHEET 2 B 2 VAL A 56 GLN A 57 -1 O VAL A 56 N LEU A 53 LINK C PR4 A 1 N VAL A 2 1555 1555 1.52 CRYST1 96.783 96.783 96.783 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010332 0.00000 HETATM 1 C PR4 A 1 37.735 76.243 68.791 1.00 5.85 C ANISOU 1 C PR4 A 1 681 769 772 21 41 10 C HETATM 2 N PR4 A 1 39.915 76.530 67.871 1.00 5.97 N ANISOU 2 N PR4 A 1 740 747 778 -54 27 63 N HETATM 3 O PR4 A 1 37.797 77.381 69.251 1.00 5.68 O ANISOU 3 O PR4 A 1 714 719 722 -26 92 -60 O HETATM 4 CA PR4 A 1 38.980 75.490 68.326 1.00 5.69 C ANISOU 4 CA PR4 A 1 666 752 742 26 59 27 C HETATM 5 CB PR4 A 1 39.613 74.817 69.549 1.00 5.72 C ANISOU 5 CB PR4 A 1 657 734 779 21 0 70 C HETATM 6 CD PR4 A 1 41.103 76.468 68.747 1.00 6.27 C ANISOU 6 CD PR4 A 1 775 836 768 10 -4 73 C HETATM 7 CG PR4 A 1 40.591 75.877 70.054 1.00 5.46 C ANISOU 7 CG PR4 A 1 657 704 712 -26 67 49 C HETATM 8 CAB PR4 A 1 40.259 76.278 66.457 1.00 6.43 C ANISOU 8 CAB PR4 A 1 757 842 843 -53 49 56 C HETATM 9 CAC PR4 A 1 40.838 77.559 65.828 1.00 7.42 C ANISOU 9 CAC PR4 A 1 909 898 1012 -50 29 108 C HETATM 10 CAD PR4 A 1 42.332 77.669 66.169 1.00 7.88 C ANISOU 10 CAD PR4 A 1 918 1026 1047 -25 10 59 C HETATM 11 OAE PR4 A 1 42.711 78.702 66.759 1.00 8.78 O ANISOU 11 OAE PR4 A 1 888 1163 1283 -46 -11 23 O HETATM 12 OAF PR4 A 1 43.058 76.708 65.841 1.00 8.39 O ANISOU 12 OAF PR4 A 1 974 1031 1182 -41 45 237 O HETATM 13 OAG PR4 A 1 40.141 78.723 66.308 1.00 9.39 O ANISOU 13 OAG PR4 A 1 1136 1140 1292 13 72 22 O