HEADER TRANSFERASE 08-APR-10 3MHK TITLE HUMAN TANKYRASE 2 - CATALYTIC PARP DOMAIN IN COMPLEX WITH 2-(2- TITLE 2 PYRIDYL)-7,8-DIHYDRO-5H-THIINO[4,3-D]PYRIMIDIN-4-OL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PARP DOMAIN (UNP RESIDUES 952-1166); COMPND 5 SYNONYM: TANK2, TANKYRASE II, TNKS-2, TRF1-INTERACTING ANKYRIN- COMPND 6 RELATED ADP-RIBOSE POLYMERASE 2, TANKYRASE-LIKE PROTEIN, TANKYRASE- COMPND 7 RELATED PROTEIN, POLY [ADP-RIBOSE] POLYMERASE 5B; COMPND 8 EC: 2.4.2.30; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP5B, TANK2, TNKL, TNKS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS CATALYTIC FRAGMENT, PARP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, ADP-RIBOSYLATION, ANK REPEAT, CHROMOSOMAL PROTEIN, KEYWDS 3 GLYCOSYLTRANSFERASE, GOLGI APPARATUS, MEMBRANE, MRNA TRANSPORT, NAD, KEYWDS 4 NUCLEUS, PHOSPHORYLATION, PROTEIN TRANSPORT, TELOMERE, TRANSFERASE, KEYWDS 5 TRANSLOCATION, TRANSPORT, WNT-SIGNALLING EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,P.SCHUTZ,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,I.JOHANSSON, AUTHOR 3 T.KOTENYOVA,N.MARKOVA,M.MOCHE,P.NORDLUND,T.NYMAN,C.PERSSON, AUTHOR 4 M.I.SIPONEN,L.SVENSSON,A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG, AUTHOR 5 J.WEIGELT,M.WELIN,M.WISNIEWSKA,H.SCHULER,STRUCTURAL GENOMICS AUTHOR 6 CONSORTIUM (SGC) REVDAT 5 01-NOV-23 3MHK 1 REMARK SEQADV LINK REVDAT 4 19-JUN-13 3MHK 1 JRNL REVDAT 3 07-MAR-12 3MHK 1 JRNL REVDAT 2 13-JUL-11 3MHK 1 VERSN REVDAT 1 05-MAY-10 3MHK 0 JRNL AUTH E.WAHLBERG,T.KARLBERG,E.KOUZNETSOVA,N.MARKOVA,A.MACCHIARULO, JRNL AUTH 2 A.G.THORSELL,E.POL,A.FROSTELL,T.EKBLAD,B.KULL,G.M.ROBERTSON, JRNL AUTH 3 R.PELLICCIARI,H.SCHULER,J.WEIGELT JRNL TITL FAMILY-WIDE CHEMICAL PROFILING AND STRUCTURAL ANALYSIS OF JRNL TITL 2 PARP AND TANKYRASE INHIBITORS JRNL REF NAT.BIOTECHNOL. V. 30 283 2012 JRNL REFN ISSN 1087-0156 JRNL PMID 22343925 JRNL DOI 10.1038/NBT.2121 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1764 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1239 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2369 ; 1.308 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2966 ; 0.808 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.127 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.915 ;22.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;15.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.706 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1972 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 386 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1036 ; 0.687 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 432 ; 0.127 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1659 ; 1.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 728 ; 1.969 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 710 ; 3.254 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 952 A 1023 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0870 21.5430 -9.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0288 REMARK 3 T33: 0.0171 T12: -0.0112 REMARK 3 T13: -0.0131 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9574 L22: 0.4524 REMARK 3 L33: 1.4530 L12: 0.2929 REMARK 3 L13: 0.1274 L23: 0.0574 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: 0.1163 S13: 0.0617 REMARK 3 S21: -0.0105 S22: 0.0764 S23: -0.0230 REMARK 3 S31: -0.0571 S32: 0.0300 S33: -0.0049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1024 A 1112 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4100 14.2500 -3.5100 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0153 REMARK 3 T33: 0.0492 T12: 0.0050 REMARK 3 T13: -0.0348 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.9198 L22: 0.2366 REMARK 3 L33: 1.1090 L12: 0.3274 REMARK 3 L13: 0.2011 L23: 0.0875 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.0178 S13: -0.0432 REMARK 3 S21: 0.0149 S22: 0.0095 S23: -0.0377 REMARK 3 S31: 0.0839 S32: -0.0406 S33: -0.0515 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1113 A 1161 REMARK 3 ORIGIN FOR THE GROUP (A): -33.3030 16.7640 -7.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: 0.0335 REMARK 3 T33: 0.0319 T12: 0.0016 REMARK 3 T13: -0.0205 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.2606 L22: 0.7507 REMARK 3 L33: 2.6807 L12: 0.6009 REMARK 3 L13: 0.8568 L23: 0.2118 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.0106 S13: 0.0303 REMARK 3 S21: -0.0142 S22: 0.0392 S23: 0.0501 REMARK 3 S31: 0.1017 S32: -0.1950 S33: -0.0202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908 REMARK 200 MONOCHROMATOR : SI MONOCHROMATOR CRYSTALS REMARK 200 OPTICS : LIQUID NITROGEN COOLED CHANNEL REMARK 200 -CUT SILICON MONOCHROMATOR AND REMARK 200 CYLINDRICAL GRAZING INCIDENCE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11932 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : 0.28700 REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3KR7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.34M DIPOTASSIUM HYDROGEN PHOSPHATE, REMARK 280 0.06M SODIUM DIHYDROGEN PHOSPHATE, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.83533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.67067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.67067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.83533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 951 REMARK 465 GLY A 1162 REMARK 465 MET A 1163 REMARK 465 VAL A 1164 REMARK 465 ASP A 1165 REMARK 465 GLY A 1166 REMARK 465 ALA A 1167 REMARK 465 HIS A 1168 REMARK 465 HIS A 1169 REMARK 465 HIS A 1170 REMARK 465 HIS A 1171 REMARK 465 HIS A 1172 REMARK 465 HIS A 1173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 1138 O3 GOL A 3 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1020 43.47 -145.14 REMARK 500 SER A1033 144.55 -171.61 REMARK 500 MET A1113 106.85 -160.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1081 SG REMARK 620 2 HIS A1084 ND1 103.7 REMARK 620 3 CYS A1089 SG 110.4 110.3 REMARK 620 4 CYS A1092 SG 115.2 105.0 111.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4L A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KR7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ITS APO FORM REMARK 900 RELATED ID: 3KR8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH XAV939 REMARK 900 RELATED ID: 3MHJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 1-METHYL-3-(TRIFLUOROMETHYL)-5H- REMARK 900 BENZO[C][1,8]NAPHTYRIDINE-6-ONE DBREF 3MHK A 952 1166 UNP Q9H2K2 TNKS2_HUMAN 952 1166 SEQADV 3MHK MET A 951 UNP Q9H2K2 INITIATING METHIONINE SEQADV 3MHK ALA A 1167 UNP Q9H2K2 EXPRESSION TAG SEQADV 3MHK HIS A 1168 UNP Q9H2K2 EXPRESSION TAG SEQADV 3MHK HIS A 1169 UNP Q9H2K2 EXPRESSION TAG SEQADV 3MHK HIS A 1170 UNP Q9H2K2 EXPRESSION TAG SEQADV 3MHK HIS A 1171 UNP Q9H2K2 EXPRESSION TAG SEQADV 3MHK HIS A 1172 UNP Q9H2K2 EXPRESSION TAG SEQADV 3MHK HIS A 1173 UNP Q9H2K2 EXPRESSION TAG SEQRES 1 A 223 MET GLY THR ILE LEU ILE ASP LEU SER PRO ASP ASP LYS SEQRES 2 A 223 GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER THR VAL SEQRES 3 A 223 ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY ILE PHE SEQRES 4 A 223 ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL CYS ASN SEQRES 5 A 223 LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG LYS GLU SEQRES 6 A 223 VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU ARG MET SEQRES 7 A 223 LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE ILE HIS SEQRES 8 A 223 LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY GLY MET SEQRES 9 A 223 PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SER LYS SEQRES 10 A 223 SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY THR GLY SEQRES 11 A 223 CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE CYS HIS SEQRES 12 A 223 ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY LYS SER SEQRES 13 A 223 PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SER PRO SEQRES 14 A 223 PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER VAL ASN SEQRES 15 A 223 GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG GLY GLU SEQRES 16 A 223 GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN ILE MET SEQRES 17 A 223 ARG PRO GLU GLY MET VAL ASP GLY ALA HIS HIS HIS HIS SEQRES 18 A 223 HIS HIS HET ZN A 1 1 HET P4L A 2 17 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HETNAM ZN ZINC ION HETNAM P4L 2-PYRIDIN-2-YL-7,8-DIHYDRO-5H-THIOPYRANO[4,3- HETNAM 2 P4L D]PYRIMIDIN-4-OL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 P4L C12 H11 N3 O S FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *70(H2 O) HELIX 1 1 ASP A 962 THR A 975 1 14 HELIX 2 2 ASN A 1002 GLU A 1019 1 18 HELIX 3 3 PHE A 1035 GLY A 1043 1 9 HELIX 4 4 ASP A 1045 ALA A 1049 5 5 HELIX 5 5 ASN A 1064 GLN A 1070 1 7 HELIX 6 6 GLY A 1074 GLY A 1078 5 5 HELIX 7 7 ARG A 1143 GLU A 1145 5 3 SHEET 1 A 5 ILE A 954 ASP A 957 0 SHEET 2 A 5 TYR A 992 CYS A1001 -1 O LYS A 999 N ILE A 956 SHEET 3 A 5 ALA A1147 ILE A1157 -1 O GLN A1156 N ASN A 993 SHEET 4 A 5 ARG A1094 THR A1102 -1 N ARG A1094 O TYR A1155 SHEET 5 A 5 GLU A1026 HIS A1031 -1 N LEU A1029 O CYS A1099 SHEET 1 B 4 ILE A1059 PHE A1061 0 SHEET 2 B 4 GLU A1138 ILE A1141 -1 O ILE A1141 N ILE A1059 SHEET 3 B 4 SER A1124 GLY A1127 -1 N GLY A1127 O GLU A1138 SHEET 4 B 4 SER A1106 GLN A1109 1 N PHE A1107 O SER A1124 LINK ZN ZN A 1 SG CYS A1081 1555 1555 2.30 LINK ZN ZN A 1 ND1 HIS A1084 1555 1555 1.99 LINK ZN ZN A 1 SG CYS A1089 1555 1555 2.27 LINK ZN ZN A 1 SG CYS A1092 1555 1555 2.18 SITE 1 AC1 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092 SITE 1 AC2 8 HIS A1031 GLY A1032 TYR A1050 TYR A1060 SITE 2 AC2 8 PHE A1061 SER A1068 TYR A1071 GLU A1138 SITE 1 AC3 5 HOH A 13 MET A1054 TYR A1060 LEU A1134 SITE 2 AC3 5 GLU A1138 SITE 1 AC4 6 HOH A 63 HIS A 979 ARG A 980 ASP A 981 SITE 2 AC4 6 GLN A1070 ALA A1135 SITE 1 AC5 2 CYS A1001 TYR A1148 CRYST1 92.484 92.484 53.506 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010813 0.006243 0.000000 0.00000 SCALE2 0.000000 0.012485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018689 0.00000