HEADER VIRAL PROTEIN 12-APR-10 3MIW TITLE CRYSTAL STRUCTURE OF ROTAVIRUS NSP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL GLYCOPROTEIN 4; COMPND 3 CHAIN: B, C, E, G, I, A, D, F, H, J; COMPND 4 FRAGMENT: DIARRHEA-INDUCING DOMAIN (UNP RESIDUES 95-146); COMPND 5 SYNONYM: NSP4, NCVP5, NS28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS G4; SOURCE 3 ORGANISM_COMMON: RV-A; SOURCE 4 ORGANISM_TAXID: 10960; SOURCE 5 STRAIN: STRAIN ST. THOMAS 3; SOURCE 6 GENE: G10; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS ROTAVIRUS ENTEROTOXIN, NON STRUCTURAL PROTEIN, NSP4, PENTAMERIC KEYWDS 2 COILED COIL, VIRULENCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.CHACKO,R.J.READ,E.J.DODSON,D.C.RAO,K.SUGUNA REVDAT 5 21-FEB-24 3MIW 1 REMARK SEQADV REVDAT 4 25-JUL-12 3MIW 1 REMARK REVDAT 3 11-APR-12 3MIW 1 JRNL REVDAT 2 28-DEC-11 3MIW 1 JRNL VERSN REVDAT 1 25-MAY-11 3MIW 0 JRNL AUTH A.R.CHACKO,J.JEYAKANTHAN,G.UENO,K.SEKAR,C.D.RAO,E.J.DODSON, JRNL AUTH 2 K.SUGUNA,R.J.READ JRNL TITL A NEW PENTAMERIC STRUCTURE OF ROTAVIRUS NSP4 REVEALED BY JRNL TITL 2 MOLECULAR REPLACEMENT. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 57 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22194333 JRNL DOI 10.1107/S0907444911049705 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 16272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8083 - 4.6103 0.93 2508 173 0.2152 0.2998 REMARK 3 2 4.6103 - 3.6669 0.91 2443 164 0.2066 0.2163 REMARK 3 3 3.6669 - 3.2056 0.92 2427 206 0.3152 0.3608 REMARK 3 4 3.2056 - 2.9135 0.94 2499 166 0.3334 0.3342 REMARK 3 5 2.9135 - 2.7053 0.96 2557 98 0.3463 0.3496 REMARK 3 6 2.7053 - 2.5461 0.90 2341 26 0.3856 0.4390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 88.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 58.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 21.25470 REMARK 3 B22 (A**2) : 21.25470 REMARK 3 B33 (A**2) : -42.50940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4990 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3403 REMARK 3 ANGLE : 1.508 4511 REMARK 3 CHIRALITY : 0.105 560 REMARK 3 PLANARITY : 0.004 575 REMARK 3 DIHEDRAL : 19.913 1310 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RH COATED BENT SI (1 1 1) MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.382 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.18700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% DIOXANE V/V, 0.1 M MES, 1.6 M REMARK 280 AMMONIUM SULPHATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.60450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.60450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E, G, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, F, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 286 LIES ON A SPECIAL POSITION. REMARK 375 HOH G 237 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 83 LIES ON A SPECIAL POSITION. REMARK 375 HOH J 264 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 138 REMARK 465 VAL B 139 REMARK 465 ASN B 140 REMARK 465 VAL B 141 REMARK 465 ILE B 142 REMARK 465 ASP B 143 REMARK 465 MET B 144 REMARK 465 SER B 145 REMARK 465 MET B 146 REMARK 465 ASN C 140 REMARK 465 VAL C 141 REMARK 465 ILE C 142 REMARK 465 ASP C 143 REMARK 465 MET C 144 REMARK 465 SER C 145 REMARK 465 MET C 146 REMARK 465 PRO E 138 REMARK 465 VAL E 139 REMARK 465 ASN E 140 REMARK 465 VAL E 141 REMARK 465 ILE E 142 REMARK 465 ASP E 143 REMARK 465 MET E 144 REMARK 465 SER E 145 REMARK 465 MET E 146 REMARK 465 ILE G 135 REMARK 465 THR G 136 REMARK 465 ARG G 137 REMARK 465 PRO G 138 REMARK 465 VAL G 139 REMARK 465 ASN G 140 REMARK 465 VAL G 141 REMARK 465 ILE G 142 REMARK 465 ASP G 143 REMARK 465 MET G 144 REMARK 465 SER G 145 REMARK 465 MET G 146 REMARK 465 ARG I 137 REMARK 465 PRO I 138 REMARK 465 VAL I 139 REMARK 465 ASN I 140 REMARK 465 VAL I 141 REMARK 465 ILE I 142 REMARK 465 ASP I 143 REMARK 465 MET I 144 REMARK 465 SER I 145 REMARK 465 MET I 146 REMARK 465 ARG A 137 REMARK 465 PRO A 138 REMARK 465 VAL A 139 REMARK 465 ASN A 140 REMARK 465 VAL A 141 REMARK 465 ILE A 142 REMARK 465 ASP A 143 REMARK 465 MET A 144 REMARK 465 SER A 145 REMARK 465 MET A 146 REMARK 465 VAL D 139 REMARK 465 ASN D 140 REMARK 465 VAL D 141 REMARK 465 ILE D 142 REMARK 465 ASP D 143 REMARK 465 MET D 144 REMARK 465 SER D 145 REMARK 465 MET D 146 REMARK 465 PRO F 138 REMARK 465 VAL F 139 REMARK 465 ASN F 140 REMARK 465 VAL F 141 REMARK 465 ILE F 142 REMARK 465 ASP F 143 REMARK 465 MET F 144 REMARK 465 SER F 145 REMARK 465 MET F 146 REMARK 465 MET H 94 REMARK 465 ILE H 135 REMARK 465 THR H 136 REMARK 465 ARG H 137 REMARK 465 PRO H 138 REMARK 465 VAL H 139 REMARK 465 ASN H 140 REMARK 465 VAL H 141 REMARK 465 ILE H 142 REMARK 465 ASP H 143 REMARK 465 MET H 144 REMARK 465 SER H 145 REMARK 465 MET H 146 REMARK 465 THR J 136 REMARK 465 ARG J 137 REMARK 465 PRO J 138 REMARK 465 VAL J 139 REMARK 465 ASN J 140 REMARK 465 VAL J 141 REMARK 465 ILE J 142 REMARK 465 ASP J 143 REMARK 465 MET J 144 REMARK 465 SER J 145 REMARK 465 MET J 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 97 CG CD OE1 NE2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 132 CG OD1 OD2 REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 95 CG1 CG2 CD1 REMARK 470 GLU C 96 CG CD OE1 OE2 REMARK 470 ASP C 100 CG OD1 OD2 REMARK 470 LYS C 104 CG CD CE NZ REMARK 470 GLU C 105 CG CD OE1 OE2 REMARK 470 ARG C 108 CG CD NE CZ NH1 NH2 REMARK 470 MET C 112 CG SD CE REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 THR C 118 OG1 CG2 REMARK 470 GLU C 122 CG CD OE1 OE2 REMARK 470 GLU C 125 CG CD OE1 OE2 REMARK 470 ASN C 133 CG OD1 ND2 REMARK 470 THR C 136 OG1 CG2 REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 PRO C 138 CG CD REMARK 470 VAL C 139 CG1 CG2 REMARK 470 GLU E 96 CG CD OE1 OE2 REMARK 470 GLN E 97 CG CD OE1 NE2 REMARK 470 GLN E 98 CG CD OE1 NE2 REMARK 470 ARG E 101 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 107 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 110 CG CD1 CD2 REMARK 470 GLU E 111 CG CD OE1 OE2 REMARK 470 ARG E 119 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 122 CG CD OE1 OE2 REMARK 470 GLU E 125 CG CD OE1 OE2 REMARK 470 LEU E 126 CG CD1 CD2 REMARK 470 LYS E 128 CG CD CE NZ REMARK 470 ARG E 129 CG CD NE CZ NH1 NH2 REMARK 470 THR E 136 OG1 CG2 REMARK 470 MET G 94 CG SD CE REMARK 470 ILE G 95 CG1 CG2 CD1 REMARK 470 GLU G 96 CG CD OE1 OE2 REMARK 470 GLN G 97 CG CD OE1 NE2 REMARK 470 LYS G 104 CG CD CE NZ REMARK 470 THR G 118 OG1 CG2 REMARK 470 ILE G 121 CG1 CG2 CD1 REMARK 470 LYS G 128 CG CD CE NZ REMARK 470 ARG G 129 CG CD NE CZ NH1 NH2 REMARK 470 LEU G 134 CG CD1 CD2 REMARK 470 MET I 94 CG SD CE REMARK 470 GLN I 97 CG CD OE1 NE2 REMARK 470 ARG I 107 CG CD NE CZ NH1 NH2 REMARK 470 ARG I 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU I 125 CG CD OE1 OE2 REMARK 470 LYS I 128 CG CD CE NZ REMARK 470 ARG I 129 CG CD NE CZ NH1 NH2 REMARK 470 ASP I 132 CG OD1 OD2 REMARK 470 LEU I 134 CG CD1 CD2 REMARK 470 ILE I 135 CG1 CG2 CD1 REMARK 470 THR I 136 OG1 CG2 REMARK 470 MET A 94 CG SD CE REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 ILE A 113 CG1 CG2 CD1 REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ILE A 135 CG1 CG2 CD1 REMARK 470 MET D 94 CG SD CE REMARK 470 GLU D 96 CG CD OE1 OE2 REMARK 470 GLN D 97 CG CD OE1 NE2 REMARK 470 LYS D 104 CG CD CE NZ REMARK 470 ARG D 107 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 111 CG CD OE1 OE2 REMARK 470 LYS D 115 CG CD CE NZ REMARK 470 THR D 117 OG1 CG2 REMARK 470 THR D 118 OG1 CG2 REMARK 470 ARG D 119 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 121 CG1 CG2 CD1 REMARK 470 ILE D 124 CG1 CG2 CD1 REMARK 470 THR D 136 OG1 CG2 REMARK 470 ARG D 137 CG CD NE CZ NH1 NH2 REMARK 470 PRO D 138 CG CD REMARK 470 MET F 94 CG SD CE REMARK 470 ILE F 95 CG1 CG2 CD1 REMARK 470 ARG F 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 104 CG CD CE NZ REMARK 470 MET F 106 CG SD CE REMARK 470 ILE F 113 CG1 CG2 CD1 REMARK 470 ILE F 124 CG1 CG2 CD1 REMARK 470 LYS F 128 CG CD CE NZ REMARK 470 ASP F 132 CG OD1 OD2 REMARK 470 GLN H 98 CG CD OE1 NE2 REMARK 470 LYS H 104 CG CD CE NZ REMARK 470 ARG H 107 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 111 CG CD OE1 OE2 REMARK 470 LYS H 115 CG CD CE NZ REMARK 470 LEU H 134 CG CD1 CD2 REMARK 470 ARG J 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS J 104 CG CD CE NZ REMARK 470 ARG J 107 CG CD NE CZ NH1 NH2 REMARK 470 GLN J 109 CG CD OE1 NE2 REMARK 470 GLU J 111 CG CD OE1 OE2 REMARK 470 MET J 112 CG SD CE REMARK 470 ILE J 121 CG1 CG2 CD1 REMARK 470 GLU J 125 CG CD OE1 OE2 REMARK 470 ASN J 133 CG OD1 ND2 REMARK 470 ILE J 135 CG1 CG2 CD1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG J 129 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL C 103 CA VAL C 103 CB 0.141 REMARK 500 VAL C 103 CA VAL C 103 C -0.193 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 138 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 95 -1.31 80.10 REMARK 500 ARG G 129 21.86 -77.15 REMARK 500 ILE G 130 -38.01 -141.37 REMARK 500 ASN I 133 49.07 -71.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 39 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 40 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 41 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 37 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO G 42 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO I 30 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 23 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 28 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 32 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 35 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO J 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO J 38 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O1J RELATED DB: PDB REMARK 900 RELATED ID: 2O1K RELATED DB: PDB DBREF 3MIW B 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW C 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW E 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW G 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW I 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW A 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW D 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW F 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW H 95 146 UNP Q82035 NSP4_ROTHT 95 146 DBREF 3MIW J 95 146 UNP Q82035 NSP4_ROTHT 95 146 SEQADV 3MIW MET B 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET C 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET E 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET G 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET I 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET A 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET D 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET F 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET H 94 UNP Q82035 INITIATING METHIONINE SEQADV 3MIW MET J 94 UNP Q82035 INITIATING METHIONINE SEQRES 1 B 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 B 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 B 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 B 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 B 53 MET SEQRES 1 C 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 C 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 C 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 C 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 C 53 MET SEQRES 1 E 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 E 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 E 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 E 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 E 53 MET SEQRES 1 G 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 G 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 G 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 G 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 G 53 MET SEQRES 1 I 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 I 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 I 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 I 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 I 53 MET SEQRES 1 A 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 A 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 A 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 A 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 A 53 MET SEQRES 1 D 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 D 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 D 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 D 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 D 53 MET SEQRES 1 F 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 F 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 F 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 F 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 F 53 MET SEQRES 1 H 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 H 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 H 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 H 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 H 53 MET SEQRES 1 J 53 MET ILE GLU GLN GLN MET ASP ARG ILE VAL LYS GLU MET SEQRES 2 J 53 ARG ARG GLN LEU GLU MET ILE ASP LYS LEU THR THR ARG SEQRES 3 J 53 GLU ILE GLU GLN ILE GLU LEU LEU LYS ARG ILE HIS ASP SEQRES 4 J 53 ASN LEU ILE THR ARG PRO VAL ASN VAL ILE ASP MET SER SEQRES 5 J 53 MET HET EDO B 18 4 HET EDO B 20 4 HET EDO B 39 4 HET EDO B 40 4 HET EDO B 41 4 HET EDO C 1 4 HET EDO C 21 4 HET EDO C 24 4 HET EDO C 33 4 HET EDO C 37 4 HET EDO G 4 4 HET EDO G 9 4 HET EDO G 42 4 HET EDO I 30 4 HET EDO A 16 4 HET EDO A 23 4 HET EDO A 28 4 HET EDO D 27 4 HET EDO D 32 4 HET EDO F 7 4 HET EDO F 8 4 HET EDO F 26 4 HET EDO H 15 4 HET EDO H 35 4 HET EDO J 3 4 HET EDO J 36 4 HET EDO J 38 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 11 EDO 27(C2 H6 O2) FORMUL 38 HOH *162(H2 O) HELIX 1 1 MET B 94 ARG B 137 1 44 HELIX 2 2 GLU C 96 ASP C 132 1 37 HELIX 3 3 ASP C 132 ARG C 137 1 6 HELIX 4 4 MET E 94 ILE E 135 1 42 HELIX 5 5 MET G 94 ASP G 132 1 39 HELIX 6 6 ILE I 95 ILE I 113 1 19 HELIX 7 7 ASP I 114 ASN I 133 1 20 HELIX 8 8 LEU I 134 THR I 136 5 3 HELIX 9 9 ILE A 95 ASN A 133 1 39 HELIX 10 10 MET D 94 ARG D 137 1 44 HELIX 11 11 MET F 94 ARG F 108 1 15 HELIX 12 12 ARG F 108 ARG F 137 1 30 HELIX 13 13 GLU H 96 ARG H 101 1 6 HELIX 14 14 VAL H 103 GLU H 111 1 9 HELIX 15 15 THR H 117 ASP H 132 1 16 HELIX 16 16 GLU J 96 LEU J 134 1 39 SITE 1 AC1 3 EDO B 39 ARG B 101 ARG C 107 SITE 1 AC2 4 MET B 94 ASN B 133 MET D 94 GLU F 96 SITE 1 AC3 3 EDO B 18 THR B 136 ARG B 137 SITE 1 AC4 1 ARG F 119 SITE 1 AC5 1 HOH B 261 SITE 1 AC6 1 ARG C 129 SITE 1 AC7 2 EDO C 24 ARG C 119 SITE 1 AC8 2 EDO C 21 EDO C 37 SITE 1 AC9 2 EDO C 24 GLU C 111 SITE 1 BC1 2 GLU G 111 ASP G 114 SITE 1 BC2 1 ILE J 135 SITE 1 BC3 3 ARG A 108 GLU A 111 MET A 112 SITE 1 BC4 6 GLU A 122 GLU A 125 LEU A 126 HOH D 16 SITE 2 BC4 6 LYS D 128 LYS E 104 SITE 1 BC5 4 ARG A 129 ASN A 133 GLN C 98 HIS D 131 SITE 1 BC6 1 EDO D 32 SITE 1 BC7 2 EDO D 27 ARG D 101 SITE 1 BC8 1 ARG F 107 SITE 1 BC9 1 LEU H 134 SITE 1 CC1 1 GLU J 111 SITE 1 CC2 1 ASP J 132 CRYST1 63.463 63.463 123.209 90.00 90.00 90.00 P 42 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015757 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008116 0.00000