HEADER UNKNOWN FUNCTION 16-APR-10 3MLI TITLE 2OUF-DS, A DISULFIDE-LINKED DIMER OF HELICOBACTER PYLORI PROTEIN TITLE 2 HP0242 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: HP_0242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS UNKNOTTED CONTROL, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.P.KING,M.R.SAWAYA,A.W.JACOBITZ,T.O.YEATES REVDAT 5 06-SEP-23 3MLI 1 REMARK REVDAT 4 06-OCT-21 3MLI 1 REMARK SEQADV LINK REVDAT 3 08-DEC-10 3MLI 1 JRNL REVDAT 2 08-SEP-10 3MLI 1 REMARK REVDAT 1 12-MAY-10 3MLI 0 JRNL AUTH N.P.KING,A.W.JACOBITZ,M.R.SAWAYA,L.GOLDSCHMIDT,T.O.YEATES JRNL TITL STRUCTURE AND FOLDING OF A DESIGNED KNOTTED PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20732 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21068371 JRNL DOI 10.1073/PNAS.1007602107 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 487 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2875 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2600 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2730 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.12700 REMARK 3 B22 (A**2) : 12.10600 REMARK 3 B33 (A**2) : -15.23300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.683 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2776 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3748 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 978 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 87 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 397 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2776 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 382 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3257 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -4.2160 2.4523 -4.1170 REMARK 3 T TENSOR REMARK 3 T11: -0.0147 T22: 0.2092 REMARK 3 T33: -0.3618 T12: -0.1117 REMARK 3 T13: -0.0984 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.2619 L22: 3.0705 REMARK 3 L33: 13.3815 L12: -0.6332 REMARK 3 L13: 0.8917 L23: -3.1494 REMARK 3 S TENSOR REMARK 3 S11: -0.3276 S12: 0.2358 S13: 0.1761 REMARK 3 S21: -0.0489 S22: -0.0209 S23: -0.2329 REMARK 3 S31: -0.7335 S32: 1.0885 S33: 0.3485 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.5782 -2.9347 4.4915 REMARK 3 T TENSOR REMARK 3 T11: -0.1267 T22: 0.0148 REMARK 3 T33: -0.3976 T12: 0.0248 REMARK 3 T13: -0.0777 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 5.2329 L22: 2.6851 REMARK 3 L33: 15.5507 L12: -0.9500 REMARK 3 L13: -0.5494 L23: -2.6197 REMARK 3 S TENSOR REMARK 3 S11: -0.2065 S12: -0.2374 S13: -0.3564 REMARK 3 S21: -0.0488 S22: 0.1982 S23: -0.1006 REMARK 3 S31: 0.5079 S32: 1.0421 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.7296 4.7894 28.0378 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: -0.0202 REMARK 3 T33: -0.3761 T12: 0.0348 REMARK 3 T13: 0.0677 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.6933 L22: 6.5115 REMARK 3 L33: 14.2295 L12: 0.7704 REMARK 3 L13: 0.1978 L23: 0.6114 REMARK 3 S TENSOR REMARK 3 S11: 0.3718 S12: -0.0728 S13: 0.3457 REMARK 3 S21: -0.4947 S22: -0.1498 S23: 0.2860 REMARK 3 S31: -1.0867 S32: -0.1917 S33: -0.2220 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.4624 2.1311 37.7780 REMARK 3 T TENSOR REMARK 3 T11: 0.0472 T22: 0.1512 REMARK 3 T33: -0.4509 T12: -0.0908 REMARK 3 T13: 0.0475 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 5.0112 L22: 5.9778 REMARK 3 L33: 15.3188 L12: 1.7644 REMARK 3 L13: -0.8411 L23: -0.9183 REMARK 3 S TENSOR REMARK 3 S11: 0.1201 S12: -0.1728 S13: -0.1233 REMARK 3 S21: -0.1552 S22: 0.2353 S23: -0.3041 REMARK 3 S31: -0.7266 S32: 0.7491 S33: -0.3555 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11588 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2OUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.3% 2-PROPANOL, 0.1 M MES PH 6.0, REMARK 280 0.32 M CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.15900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.01450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.01450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.15900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.82400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -22.15900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 67.01450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLU A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ASP B 3 REMARK 465 TYR B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 GLU B 8 REMARK 465 ILE B 9 REMARK 465 PHE B 10 REMARK 465 GLU B 11 REMARK 465 GLY B 12 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 465 HIS B 100 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 ASP C 3 REMARK 465 TYR C 4 REMARK 465 SER C 5 REMARK 465 GLU C 6 REMARK 465 LEU C 7 REMARK 465 GLU C 8 REMARK 465 ILE C 9 REMARK 465 PHE C 10 REMARK 465 HIS C 100 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 HIS D 97 REMARK 465 HIS D 98 REMARK 465 HIS D 99 REMARK 465 HIS D 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 LYS A 17 CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 28 CB CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 32 CB CG CD CE NZ REMARK 470 LYS A 56 CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 66 CG1 CG2 CD1 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 GLU A 69 OE1 OE2 REMARK 470 LYS A 73 CD CE NZ REMARK 470 LEU B 15 CG CD1 CD2 REMARK 470 ASP B 16 CB CG OD1 OD2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 28 CB CG CD CE NZ REMARK 470 LYS B 31 CB CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 GLU B 35 CD OE1 OE2 REMARK 470 LYS B 56 CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 66 CG1 CG2 CD1 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 GLU B 69 OE1 OE2 REMARK 470 LYS B 73 CD CE NZ REMARK 470 LEU B 93 CG CD1 CD2 REMARK 470 HIS B 96 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 16 CB CG OD1 OD2 REMARK 470 LYS C 27 CG CD CE NZ REMARK 470 LYS C 28 CB CG CD CE NZ REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 LYS C 56 CD CE NZ REMARK 470 LYS C 62 CG CD CE NZ REMARK 470 ARG C 65 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 66 CG1 CG2 CD1 REMARK 470 GLU C 68 CG CD OE1 OE2 REMARK 470 GLU C 69 OE1 OE2 REMARK 470 LYS C 73 CD CE NZ REMARK 470 LEU C 90 CG CD1 CD2 REMARK 470 HIS C 97 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 98 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 99 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 LEU D 15 CG CD1 CD2 REMARK 470 ASP D 16 CB CG OD1 OD2 REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 LYS D 32 CG CD CE NZ REMARK 470 LEU D 40 CG CD1 CD2 REMARK 470 LEU D 43 CG CD1 CD2 REMARK 470 GLU D 45 CG CD OE1 OE2 REMARK 470 LYS D 56 CD CE NZ REMARK 470 GLU D 58 CG CD OE1 OE2 REMARK 470 LYS D 62 CG CD CE NZ REMARK 470 ARG D 65 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 66 CG1 CG2 CD1 REMARK 470 GLU D 68 CG CD OE1 OE2 REMARK 470 GLU D 69 OE1 OE2 REMARK 470 LYS D 73 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 88.37 -154.83 REMARK 500 HIS C 98 -53.44 -134.70 REMARK 500 ASN D 13 76.94 -112.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 8 OE2 REMARK 620 2 GLU D 11 OE2 135.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 11 OE1 REMARK 620 2 GLU D 11 OE2 48.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MLG RELATED DB: PDB REMARK 900 DESIGNED KNOTTED PROTEIN; A TANDEM DUPLICATION OF HELICOBACTER REMARK 900 PYLORI PROTEIN HP0242 REMARK 900 RELATED ID: 2OUF RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN DBREF 3MLI A 1 94 UNP O25025 O25025_HELPY 1 94 DBREF 3MLI B 1 94 UNP O25025 O25025_HELPY 1 94 DBREF 3MLI C 1 94 UNP O25025 O25025_HELPY 1 94 DBREF 3MLI D 1 94 UNP O25025 O25025_HELPY 1 94 SEQADV 3MLI CYS A 44 UNP O25025 LEU 44 ENGINEERED MUTATION SEQADV 3MLI LEU A 93 UNP O25025 ASN 93 ENGINEERED MUTATION SEQADV 3MLI HIS A 95 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS A 96 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS A 97 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS A 98 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS A 99 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS A 100 UNP O25025 EXPRESSION TAG SEQADV 3MLI CYS B 44 UNP O25025 LEU 44 ENGINEERED MUTATION SEQADV 3MLI LEU B 93 UNP O25025 ASN 93 ENGINEERED MUTATION SEQADV 3MLI HIS B 95 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS B 96 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS B 97 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS B 98 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS B 99 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS B 100 UNP O25025 EXPRESSION TAG SEQADV 3MLI CYS C 44 UNP O25025 LEU 44 ENGINEERED MUTATION SEQADV 3MLI LEU C 93 UNP O25025 ASN 93 ENGINEERED MUTATION SEQADV 3MLI HIS C 95 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS C 96 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS C 97 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS C 98 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS C 99 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS C 100 UNP O25025 EXPRESSION TAG SEQADV 3MLI CYS D 44 UNP O25025 LEU 44 ENGINEERED MUTATION SEQADV 3MLI LEU D 93 UNP O25025 ASN 93 ENGINEERED MUTATION SEQADV 3MLI HIS D 95 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS D 96 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS D 97 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS D 98 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS D 99 UNP O25025 EXPRESSION TAG SEQADV 3MLI HIS D 100 UNP O25025 EXPRESSION TAG SEQRES 1 A 100 MET ARG ASP TYR SER GLU LEU GLU ILE PHE GLU GLY ASN SEQRES 2 A 100 PRO LEU ASP LYS TRP ASN ASP ILE ILE PHE HIS ALA SER SEQRES 3 A 100 LYS LYS LEU SER LYS LYS GLU LEU GLU ARG LEU LEU GLU SEQRES 4 A 100 LEU LEU ALA LEU CYS GLU THR PHE ILE GLU LYS GLU ASP SEQRES 5 A 100 LEU GLU GLU LYS PHE GLU SER PHE ALA LYS ALA LEU ARG SEQRES 6 A 100 ILE ASP GLU GLU LEU GLN GLN LYS ILE GLU SER ARG LYS SEQRES 7 A 100 THR ASP ILE VAL ILE GLN SER MET ALA ASN ILE LEU SER SEQRES 8 A 100 GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 100 MET ARG ASP TYR SER GLU LEU GLU ILE PHE GLU GLY ASN SEQRES 2 B 100 PRO LEU ASP LYS TRP ASN ASP ILE ILE PHE HIS ALA SER SEQRES 3 B 100 LYS LYS LEU SER LYS LYS GLU LEU GLU ARG LEU LEU GLU SEQRES 4 B 100 LEU LEU ALA LEU CYS GLU THR PHE ILE GLU LYS GLU ASP SEQRES 5 B 100 LEU GLU GLU LYS PHE GLU SER PHE ALA LYS ALA LEU ARG SEQRES 6 B 100 ILE ASP GLU GLU LEU GLN GLN LYS ILE GLU SER ARG LYS SEQRES 7 B 100 THR ASP ILE VAL ILE GLN SER MET ALA ASN ILE LEU SER SEQRES 8 B 100 GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 100 MET ARG ASP TYR SER GLU LEU GLU ILE PHE GLU GLY ASN SEQRES 2 C 100 PRO LEU ASP LYS TRP ASN ASP ILE ILE PHE HIS ALA SER SEQRES 3 C 100 LYS LYS LEU SER LYS LYS GLU LEU GLU ARG LEU LEU GLU SEQRES 4 C 100 LEU LEU ALA LEU CYS GLU THR PHE ILE GLU LYS GLU ASP SEQRES 5 C 100 LEU GLU GLU LYS PHE GLU SER PHE ALA LYS ALA LEU ARG SEQRES 6 C 100 ILE ASP GLU GLU LEU GLN GLN LYS ILE GLU SER ARG LYS SEQRES 7 C 100 THR ASP ILE VAL ILE GLN SER MET ALA ASN ILE LEU SER SEQRES 8 C 100 GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 100 MET ARG ASP TYR SER GLU LEU GLU ILE PHE GLU GLY ASN SEQRES 2 D 100 PRO LEU ASP LYS TRP ASN ASP ILE ILE PHE HIS ALA SER SEQRES 3 D 100 LYS LYS LEU SER LYS LYS GLU LEU GLU ARG LEU LEU GLU SEQRES 4 D 100 LEU LEU ALA LEU CYS GLU THR PHE ILE GLU LYS GLU ASP SEQRES 5 D 100 LEU GLU GLU LYS PHE GLU SER PHE ALA LYS ALA LEU ARG SEQRES 6 D 100 ILE ASP GLU GLU LEU GLN GLN LYS ILE GLU SER ARG LYS SEQRES 7 D 100 THR ASP ILE VAL ILE GLN SER MET ALA ASN ILE LEU SER SEQRES 8 D 100 GLY LEU GLU HIS HIS HIS HIS HIS HIS HET CA D 101 1 HET CA D 102 1 HETNAM CA CALCIUM ION FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *11(H2 O) HELIX 1 1 ASP A 3 LEU A 7 5 5 HELIX 2 2 ASN A 13 PHE A 23 1 11 HELIX 3 3 SER A 26 GLU A 51 1 26 HELIX 4 4 LEU A 53 ASP A 67 1 15 HELIX 5 5 ASP A 67 LEU A 93 1 27 HELIX 6 6 ASN B 13 ALA B 25 1 13 HELIX 7 7 SER B 26 GLU B 51 1 26 HELIX 8 8 LEU B 53 LYS B 62 1 10 HELIX 9 9 ALA B 63 ILE B 66 5 4 HELIX 10 10 ASP B 67 HIS B 96 1 30 HELIX 11 11 ASN C 13 ALA C 25 1 13 HELIX 12 12 SER C 26 GLU C 51 1 26 HELIX 13 13 LEU C 53 LEU C 64 1 12 HELIX 14 14 ASP C 67 HIS C 95 1 29 HELIX 15 15 ASP D 3 LEU D 7 5 5 HELIX 16 16 ASN D 13 ALA D 25 1 13 HELIX 17 17 SER D 26 GLU D 51 1 26 HELIX 18 18 LEU D 53 LEU D 64 1 12 HELIX 19 19 ASP D 67 LEU D 93 1 27 SSBOND 1 CYS A 44 CYS B 44 1555 1555 2.05 SSBOND 2 CYS C 44 CYS D 44 1555 1555 2.06 LINK OE2 GLU D 8 CA CA D 102 1555 1555 2.37 LINK OE1 GLU D 11 CA CA D 101 1555 1555 2.16 LINK OE2 GLU D 11 CA CA D 101 1555 1555 2.93 LINK OE2 GLU D 11 CA CA D 102 1555 1555 2.21 SITE 1 AC1 4 GLU A 11 GLU D 11 LYS D 17 ASP D 52 SITE 1 AC2 3 GLU A 11 GLU D 8 GLU D 11 CRYST1 44.318 75.648 134.029 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022564 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007461 0.00000