HEADER TRANSCRIPTION/DNA 17-APR-10 3MLO TITLE DNA BINDING DOMAIN OF EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA TITLE 2 (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR COE1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: EBF1, O/E-1, OE-1, EARLY B-CELL FACTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP*AP*AP*G)- COMPND 10 3'); COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EBF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE KEYWDS TRANSCRIPTION FACTOR, PSEUDO-IG-FOLD, ZN-FINGER, ZN-KNUCKLE, DNA, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX, EBF, EBF-1 EXPDTA X-RAY DIFFRACTION AUTHOR N.TREIBER,T.TREIBER,G.ZOCHER,R.GROSSCHEDL REVDAT 4 20-MAR-24 3MLO 1 REMARK SEQADV LINK REVDAT 3 23-DEC-15 3MLO 1 KEYWDS REVDAT 2 18-APR-12 3MLO 1 SHEET VERSN REVDAT 1 01-DEC-10 3MLO 0 JRNL AUTH N.TREIBER,T.TREIBER,G.ZOCHER,R.GROSSCHEDL JRNL TITL STRUCTURE OF AN EBF1:DNA COMPLEX REVEALS UNUSUAL DNA JRNL TITL 2 RECOGNITION AND STRUCTURAL HOMOLOGY WITH REL PROTEINS JRNL REF GENES DEV. V. 24 2270 2010 JRNL REFN ISSN 0890-9369 JRNL PMID 20876732 JRNL DOI 10.1101/GAD.1976610 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3411 REMARK 3 NUCLEIC ACID ATOMS : 896 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -2.03000 REMARK 3 B12 (A**2) : 0.68000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.559 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.416 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.372 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.369 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.842 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4481 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6230 ; 1.341 ; 2.200 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;37.319 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;19.009 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3154 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 0.368 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3412 ; 0.711 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 0.979 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2818 ; 1.633 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8426 27.9210 -0.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.2332 REMARK 3 T33: 0.0951 T12: 0.0118 REMARK 3 T13: 0.0043 T23: 0.0818 REMARK 3 L TENSOR REMARK 3 L11: 2.4020 L22: 3.2409 REMARK 3 L33: 4.5385 L12: -0.7303 REMARK 3 L13: -0.5131 L23: -1.1974 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.3400 S13: -0.1430 REMARK 3 S21: -0.1138 S22: 0.0083 S23: 0.0697 REMARK 3 S31: 0.2746 S32: -0.1255 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): -46.5375 16.4652 37.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.1941 REMARK 3 T33: 0.1214 T12: -0.0365 REMARK 3 T13: 0.0559 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 3.4025 L22: 4.5001 REMARK 3 L33: 4.4586 L12: -0.8679 REMARK 3 L13: -0.4824 L23: -1.2226 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.0045 S13: -0.2340 REMARK 3 S21: 0.3705 S22: 0.0715 S23: 0.3366 REMARK 3 S31: 0.3589 S32: -0.5110 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 22 REMARK 3 RESIDUE RANGE : D 1 D 22 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4142 27.8034 25.2038 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.1533 REMARK 3 T33: 0.3010 T12: 0.1857 REMARK 3 T13: -0.0578 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 1.6889 L22: 0.6464 REMARK 3 L33: 2.3291 L12: 1.2016 REMARK 3 L13: -0.4899 L23: -0.2419 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: -0.0273 S13: 0.0889 REMARK 3 S21: 0.2227 S22: -0.0073 S23: -0.0597 REMARK 3 S31: -0.0870 S32: 0.2125 S33: -0.0697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-09; 03-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X06DA; X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 1.2551, 1.2556, 1.2425 REMARK 200 MONOCHROMATOR : BARTELS; BARTELS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19172 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG4000, 200MM KCL, 100MM MES, PH REMARK 280 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 401.04000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 200.52000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 300.78000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 100.26000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 501.30000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 401.04000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 200.52000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 100.26000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 300.78000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 501.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 24 REMARK 465 ASN A 25 REMARK 465 ALA A 26 REMARK 465 VAL A 27 REMARK 465 ARG A 28 REMARK 465 THR A 29 REMARK 465 TRP A 30 REMARK 465 MET A 31 REMARK 465 GLN A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 GLN A 247 REMARK 465 MET B 24 REMARK 465 ASN B 25 REMARK 465 ALA B 26 REMARK 465 VAL B 27 REMARK 465 ARG B 28 REMARK 465 THR B 29 REMARK 465 TRP B 30 REMARK 465 MET B 31 REMARK 465 GLN B 32 REMARK 465 GLY B 33 REMARK 465 ALA B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 180 O HOH A 20 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 6 O3' DT C 6 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 18 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG C 22 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC D 1 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 6 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT D 7 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG D 15 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 18 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 20 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 21 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 95 -106.29 42.47 REMARK 500 ASN A 100 27.54 48.00 REMARK 500 LYS A 103 72.82 -108.53 REMARK 500 ARG A 185 -37.03 62.48 REMARK 500 ASN A 236 34.54 -140.65 REMARK 500 LYS B 95 -135.59 55.36 REMARK 500 ARG B 185 -13.47 66.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 157 NE2 REMARK 620 2 CYS A 161 SG 115.9 REMARK 620 3 CYS A 164 SG 107.7 99.0 REMARK 620 4 CYS A 170 SG 114.3 112.3 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 157 NE2 REMARK 620 2 CYS B 161 SG 104.6 REMARK 620 3 CYS B 164 SG 115.9 116.6 REMARK 620 4 CYS B 170 SG 99.8 110.8 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MLN RELATED DB: PDB REMARK 900 RELATED ID: 3MLP RELATED DB: PDB DBREF 3MLO A 24 241 UNP Q07802 COE1_MOUSE 24 241 DBREF 3MLO B 24 241 UNP Q07802 COE1_MOUSE 24 241 DBREF 3MLO C 1 22 PDB 3MLO 3MLO 1 22 DBREF 3MLO D 1 22 PDB 3MLO 3MLO 1 22 SEQADV 3MLO GLU A 242 UNP Q07802 EXPRESSION TAG SEQADV 3MLO ASN A 243 UNP Q07802 EXPRESSION TAG SEQADV 3MLO LEU A 244 UNP Q07802 EXPRESSION TAG SEQADV 3MLO TYR A 245 UNP Q07802 EXPRESSION TAG SEQADV 3MLO PHE A 246 UNP Q07802 EXPRESSION TAG SEQADV 3MLO GLN A 247 UNP Q07802 EXPRESSION TAG SEQADV 3MLO GLU B 242 UNP Q07802 EXPRESSION TAG SEQADV 3MLO ASN B 243 UNP Q07802 EXPRESSION TAG SEQADV 3MLO LEU B 244 UNP Q07802 EXPRESSION TAG SEQADV 3MLO TYR B 245 UNP Q07802 EXPRESSION TAG SEQADV 3MLO PHE B 246 UNP Q07802 EXPRESSION TAG SEQADV 3MLO GLN B 247 UNP Q07802 EXPRESSION TAG SEQRES 1 A 224 MET ASN ALA VAL ARG THR TRP MET GLN GLY ALA GLY VAL SEQRES 2 A 224 LEU ASP ALA ASN THR ALA ALA GLN SER GLY VAL GLY LEU SEQRES 3 A 224 ALA ARG ALA HIS PHE GLU LYS GLN PRO PRO SER ASN LEU SEQRES 4 A 224 ARG LYS SER ASN PHE PHE HIS PHE VAL LEU ALA LEU TYR SEQRES 5 A 224 ASP ARG GLN GLY GLN PRO VAL GLU ILE GLU ARG THR ALA SEQRES 6 A 224 PHE VAL GLY PHE VAL GLU LYS GLU LYS GLU ALA ASN SER SEQRES 7 A 224 GLU LYS THR ASN ASN GLY ILE HIS TYR ARG LEU GLN LEU SEQRES 8 A 224 LEU TYR SER ASN GLY ILE ARG THR GLU GLN ASP PHE TYR SEQRES 9 A 224 VAL ARG LEU ILE ASP SER MET THR LYS GLN ALA ILE VAL SEQRES 10 A 224 TYR GLU GLY GLN ASP LYS ASN PRO GLU MET CYS ARG VAL SEQRES 11 A 224 LEU LEU THR HIS GLU ILE MET CYS SER ARG CYS CYS ASP SEQRES 12 A 224 LYS LYS SER CYS GLY ASN ARG ASN GLU THR PRO SER ASP SEQRES 13 A 224 PRO VAL ILE ILE ASP ARG PHE PHE LEU LYS PHE PHE LEU SEQRES 14 A 224 LYS CYS ASN GLN ASN CYS LEU LYS ASN ALA GLY ASN PRO SEQRES 15 A 224 ARG ASP MET ARG ARG PHE GLN VAL VAL VAL SER THR THR SEQRES 16 A 224 VAL ASN VAL ASP GLY HIS VAL LEU ALA VAL SER ASP ASN SEQRES 17 A 224 MET PHE VAL HIS ASN ASN SER LYS HIS GLY GLU ASN LEU SEQRES 18 A 224 TYR PHE GLN SEQRES 1 B 224 MET ASN ALA VAL ARG THR TRP MET GLN GLY ALA GLY VAL SEQRES 2 B 224 LEU ASP ALA ASN THR ALA ALA GLN SER GLY VAL GLY LEU SEQRES 3 B 224 ALA ARG ALA HIS PHE GLU LYS GLN PRO PRO SER ASN LEU SEQRES 4 B 224 ARG LYS SER ASN PHE PHE HIS PHE VAL LEU ALA LEU TYR SEQRES 5 B 224 ASP ARG GLN GLY GLN PRO VAL GLU ILE GLU ARG THR ALA SEQRES 6 B 224 PHE VAL GLY PHE VAL GLU LYS GLU LYS GLU ALA ASN SER SEQRES 7 B 224 GLU LYS THR ASN ASN GLY ILE HIS TYR ARG LEU GLN LEU SEQRES 8 B 224 LEU TYR SER ASN GLY ILE ARG THR GLU GLN ASP PHE TYR SEQRES 9 B 224 VAL ARG LEU ILE ASP SER MET THR LYS GLN ALA ILE VAL SEQRES 10 B 224 TYR GLU GLY GLN ASP LYS ASN PRO GLU MET CYS ARG VAL SEQRES 11 B 224 LEU LEU THR HIS GLU ILE MET CYS SER ARG CYS CYS ASP SEQRES 12 B 224 LYS LYS SER CYS GLY ASN ARG ASN GLU THR PRO SER ASP SEQRES 13 B 224 PRO VAL ILE ILE ASP ARG PHE PHE LEU LYS PHE PHE LEU SEQRES 14 B 224 LYS CYS ASN GLN ASN CYS LEU LYS ASN ALA GLY ASN PRO SEQRES 15 B 224 ARG ASP MET ARG ARG PHE GLN VAL VAL VAL SER THR THR SEQRES 16 B 224 VAL ASN VAL ASP GLY HIS VAL LEU ALA VAL SER ASP ASN SEQRES 17 B 224 MET PHE VAL HIS ASN ASN SER LYS HIS GLY GLU ASN LEU SEQRES 18 B 224 TYR PHE GLN SEQRES 1 C 22 DC DT DT DT DA DT DT DC DC DC DA DT DG SEQRES 2 C 22 DG DG DA DA DT DA DA DA DG SEQRES 1 D 22 DC DT DT DT DA DT DT DC DC DC DA DT DG SEQRES 2 D 22 DG DG DA DA DT DA DA DA DG HET ZN A 501 1 HET ZN B 501 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *33(H2 O) HELIX 1 1 ALA A 39 SER A 45 1 7 HELIX 2 2 GLU A 94 GLU A 102 5 9 HELIX 3 3 ASN A 147 CYS A 151 5 5 HELIX 4 4 CYS A 161 ASP A 166 1 6 HELIX 5 5 CYS A 170 THR A 176 1 7 HELIX 6 6 GLU B 94 GLU B 102 5 9 HELIX 7 7 ASN B 147 CYS B 151 5 5 HELIX 8 8 CYS B 170 THR B 176 1 7 SHEET 1 A 6 LEU A 37 ASP A 38 0 SHEET 2 A 6 ARG A 121 ASP A 132 1 O ARG A 121 N LEU A 37 SHEET 3 A 6 ILE A 108 LEU A 115 -1 N TYR A 110 O PHE A 126 SHEET 4 A 6 PRO A 81 PHE A 92 -1 N ARG A 86 O GLN A 113 SHEET 5 A 6 PHE A 67 TYR A 75 -1 N LEU A 74 O VAL A 82 SHEET 6 A 6 ARG A 51 LYS A 56 -1 N ARG A 51 O TYR A 75 SHEET 1 B 9 ASN A 61 ARG A 63 0 SHEET 2 B 9 VAL A 225 HIS A 235 1 O HIS A 235 N LEU A 62 SHEET 3 B 9 PHE A 211 SER A 216 -1 N VAL A 215 O ALA A 227 SHEET 4 B 9 ARG A 121 ASP A 132 -1 N ARG A 129 O VAL A 214 SHEET 5 B 9 ILE A 108 LEU A 115 -1 N TYR A 110 O PHE A 126 SHEET 6 B 9 PRO A 81 PHE A 92 -1 N ARG A 86 O GLN A 113 SHEET 7 B 9 PHE A 67 TYR A 75 -1 N LEU A 74 O VAL A 82 SHEET 8 B 9 PHE A 187 CYS A 194 -1 O LEU A 188 N LEU A 72 SHEET 9 B 9 VAL A 181 ILE A 183 -1 N ILE A 183 O PHE A 187 SHEET 1 C 4 ARG A 51 LYS A 56 0 SHEET 2 C 4 PHE A 67 TYR A 75 -1 O TYR A 75 N ARG A 51 SHEET 3 C 4 PHE A 187 CYS A 194 -1 O LEU A 188 N LEU A 72 SHEET 4 C 4 LEU A 154 LEU A 155 -1 N LEU A 155 O LYS A 193 SHEET 1 D 4 VAL B 36 ASP B 38 0 SHEET 2 D 4 ARG B 121 ASP B 132 1 O GLU B 123 N LEU B 37 SHEET 3 D 4 ILE B 108 LEU B 115 -1 N LEU B 112 O GLN B 124 SHEET 4 D 4 PHE B 89 PHE B 92 -1 N VAL B 90 O HIS B 109 SHEET 1 E 5 GLU B 83 ARG B 86 0 SHEET 2 E 5 ILE B 108 LEU B 115 -1 O LEU B 115 N GLU B 83 SHEET 3 E 5 ARG B 121 ASP B 132 -1 O GLN B 124 N LEU B 112 SHEET 4 E 5 PHE B 211 SER B 216 -1 O SER B 216 N TYR B 127 SHEET 5 E 5 ALA B 227 VAL B 228 -1 O ALA B 227 N VAL B 215 SHEET 1 F 4 LEU B 49 LYS B 56 0 SHEET 2 F 4 PHE B 67 ASP B 76 -1 O VAL B 71 N LYS B 56 SHEET 3 F 4 PHE B 187 CYS B 194 -1 O LEU B 188 N LEU B 72 SHEET 4 F 4 LEU B 154 LEU B 155 -1 N LEU B 155 O LYS B 193 SHEET 1 G 4 LEU B 49 LYS B 56 0 SHEET 2 G 4 PHE B 67 ASP B 76 -1 O VAL B 71 N LYS B 56 SHEET 3 G 4 PHE B 187 CYS B 194 -1 O LEU B 188 N LEU B 72 SHEET 4 G 4 VAL B 181 ILE B 183 -1 N ILE B 183 O PHE B 187 SHEET 1 H 2 ASN B 61 ARG B 63 0 SHEET 2 H 2 PHE B 233 HIS B 235 1 O HIS B 235 N LEU B 62 LINK NE2 HIS A 157 ZN ZN A 501 1555 1555 1.99 LINK SG CYS A 161 ZN ZN A 501 1555 1555 2.06 LINK SG CYS A 164 ZN ZN A 501 1555 1555 2.16 LINK SG CYS A 170 ZN ZN A 501 1555 1555 2.39 LINK NE2 HIS B 157 ZN ZN B 501 1555 1555 2.04 LINK SG CYS B 161 ZN ZN B 501 1555 1555 2.11 LINK SG CYS B 164 ZN ZN B 501 1555 1555 2.27 LINK SG CYS B 170 ZN ZN B 501 1555 1555 2.22 SITE 1 AC1 4 HIS A 157 CYS A 161 CYS A 164 CYS A 170 SITE 1 AC2 4 HIS B 157 CYS B 161 CYS B 164 CYS B 170 CRYST1 70.750 70.750 601.560 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014134 0.008160 0.000000 0.00000 SCALE2 0.000000 0.016321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001662 0.00000