HEADER HYDROLASE 23-APR-10 3MOR TITLE CRYSTAL STRUCTURE OF CATHEPSIN B FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN B-LIKE CYSTEINE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 24-340; COMPND 5 SYNONYM: CYSTEINE PEPTIDASE C (CPC); COMPND 6 EC: 3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: TB927.6.560; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS THIOL PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.CUPELLI,T.STEHLE REVDAT 5 06-NOV-24 3MOR 1 REMARK REVDAT 4 06-SEP-23 3MOR 1 HETSYN REVDAT 3 29-JUL-20 3MOR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 20-JUN-12 3MOR 1 JRNL REVDAT 1 02-NOV-11 3MOR 0 JRNL AUTH R.KOOPMANN,K.CUPELLI,L.REDECKE,K.NASS,D.P.DEPONTE,T.A.WHITE, JRNL AUTH 2 F.STELLATO,D.REHDERS,M.LIANG,J.ANDREASSON,A.AQUILA,S.BAJT, JRNL AUTH 3 M.BARTHELMESS,A.BARTY,M.J.BOGAN,C.BOSTEDT,S.BOUTET, JRNL AUTH 4 J.D.BOZEK,C.CALEMAN,N.COPPOLA,J.DAVIDSSON,R.B.DOAK, JRNL AUTH 5 T.EKEBERG,S.W.EPP,B.ERK,H.FLECKENSTEIN,L.FOUCAR,H.GRAAFSMA, JRNL AUTH 6 L.GUMPRECHT,J.HAJDU,C.Y.HAMPTON,A.HARTMANN,R.HARTMANN, JRNL AUTH 7 G.HAUSER,H.HIRSEMANN,P.HOLL,M.S.HUNTER,S.KASSEMEYER, JRNL AUTH 8 R.A.KIRIAN,L.LOMB,F.R.MAIA,N.KIMMEL,A.V.MARTIN, JRNL AUTH 9 M.MESSERSCHMIDT,C.REICH,D.ROLLES,B.RUDEK,A.RUDENKO, JRNL AUTH10 I.SCHLICHTING,J.SCHULZ,M.M.SEIBERT,R.L.SHOEMAN,R.G.SIERRA, JRNL AUTH11 H.SOLTAU,S.STERN,L.STRUDER,N.TIMNEANU,J.ULLRICH,X.WANG, JRNL AUTH12 G.WEIDENSPOINTNER,U.WEIERSTALL,G.J.WILLIAMS,C.B.WUNDERER, JRNL AUTH13 P.FROMME,J.C.SPENCE,T.STEHLE,H.N.CHAPMAN,C.BETZEL,M.DUSZENKO JRNL TITL IN VIVO PROTEIN CRYSTALLIZATION OPENS NEW ROUTES IN JRNL TITL 2 STRUCTURAL BIOLOGY. JRNL REF NAT.METHODS V. 9 259 2012 JRNL REFN ISSN 1548-7091 JRNL PMID 22286384 JRNL DOI 10.1038/NMETH.1859 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 17772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.012 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4249 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 8 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5803 ; 0.600 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16 ; 0.368 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 5.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;32.569 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;14.531 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3406 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2596 ; 0.824 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4153 ; 1.562 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1653 ; 2.442 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1650 ; 3.868 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 80 A 95 6 REMARK 3 1 B 80 B 95 6 REMARK 3 2 A 103 A 115 6 REMARK 3 2 B 103 B 115 6 REMARK 3 3 A 119 A 123 6 REMARK 3 3 B 119 B 123 6 REMARK 3 4 A 127 A 133 6 REMARK 3 4 B 127 B 133 6 REMARK 3 5 A 144 A 193 6 REMARK 3 5 B 144 B 193 6 REMARK 3 6 A 203 A 215 6 REMARK 3 6 B 203 B 215 6 REMARK 3 7 A 219 A 334 6 REMARK 3 7 B 219 B 334 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1696 ; 0.190 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1696 ; 1.440 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.29200 REMARK 200 FOR THE DATA SET : 6.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350,(NH4)2HPO4, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 LEU A 32 REMARK 465 SER A 33 REMARK 465 LYS A 34 REMARK 465 ALA A 35 REMARK 465 PHE A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 465 ARG A 39 REMARK 465 VAL A 40 REMARK 465 ASN A 41 REMARK 465 ARG A 42 REMARK 465 LEU A 43 REMARK 465 ASN A 44 REMARK 465 ARG A 45 REMARK 465 GLY A 46 REMARK 465 ILE A 47 REMARK 465 TRP A 48 REMARK 465 LYS A 49 REMARK 465 ALA A 50 REMARK 465 LYS A 51 REMARK 465 TYR A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 54 REMARK 465 VAL A 55 REMARK 465 MET A 56 REMARK 465 GLN A 57 REMARK 465 ASN A 58 REMARK 465 ILE A 59 REMARK 465 THR A 60 REMARK 465 LEU A 61 REMARK 465 ARG A 62 REMARK 465 GLU A 63 REMARK 465 ALA A 64 REMARK 465 LYS A 65 REMARK 465 ARG A 66 REMARK 465 LEU A 67 REMARK 465 ASN A 68 REMARK 465 GLY A 69 REMARK 465 VAL A 70 REMARK 465 ILE A 71 REMARK 465 LYS A 72 REMARK 465 LYS A 73 REMARK 465 ASN A 74 REMARK 465 ASN A 75 REMARK 465 ASN A 76 REMARK 465 ALA A 77 REMARK 465 ASN A 338 REMARK 465 THR A 339 REMARK 465 ALA A 340 REMARK 465 LEU B 24 REMARK 465 VAL B 25 REMARK 465 ALA B 26 REMARK 465 GLU B 27 REMARK 465 ASP B 28 REMARK 465 ALA B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 LYS B 34 REMARK 465 ALA B 35 REMARK 465 PHE B 36 REMARK 465 VAL B 37 REMARK 465 ASP B 38 REMARK 465 ARG B 39 REMARK 465 VAL B 40 REMARK 465 ASN B 41 REMARK 465 ARG B 42 REMARK 465 LEU B 43 REMARK 465 ASN B 44 REMARK 465 ARG B 45 REMARK 465 GLY B 46 REMARK 465 ILE B 47 REMARK 465 TRP B 48 REMARK 465 LYS B 49 REMARK 465 ALA B 50 REMARK 465 LYS B 51 REMARK 465 TYR B 52 REMARK 465 ASP B 53 REMARK 465 GLY B 54 REMARK 465 VAL B 55 REMARK 465 MET B 56 REMARK 465 GLN B 57 REMARK 465 ASN B 58 REMARK 465 ILE B 59 REMARK 465 THR B 60 REMARK 465 LEU B 61 REMARK 465 ARG B 62 REMARK 465 GLU B 63 REMARK 465 ALA B 64 REMARK 465 LYS B 65 REMARK 465 ARG B 66 REMARK 465 LEU B 67 REMARK 465 ASN B 68 REMARK 465 GLY B 69 REMARK 465 VAL B 70 REMARK 465 ILE B 71 REMARK 465 LYS B 72 REMARK 465 LYS B 73 REMARK 465 ASN B 74 REMARK 465 ASN B 75 REMARK 465 ASN B 76 REMARK 465 ALA B 77 REMARK 465 ASN B 338 REMARK 465 THR B 339 REMARK 465 ALA B 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLN A 277 CG CD OE1 NE2 REMARK 470 ASN B 209 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 349 O HOH B 347 1655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -166.06 65.47 REMARK 500 THR A 177 -47.21 -135.78 REMARK 500 HIS A 195 -73.49 -79.94 REMARK 500 SER A 196 -94.33 -153.55 REMARK 500 ASN A 267 -6.99 -141.16 REMARK 500 TRP A 304 44.32 -108.98 REMARK 500 ASN A 305 -178.68 50.54 REMARK 500 SER B 117 -164.25 67.72 REMARK 500 MET B 138 -33.10 -134.99 REMARK 500 ASN B 267 -16.86 -144.11 REMARK 500 ASN B 305 178.08 53.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HUC RELATED DB: PDB REMARK 900 RELATED ID: 1QDQ RELATED DB: PDB DBREF 3MOR A 24 340 UNP Q6R7Z5 Q6R7Z5_9TRYP 24 340 DBREF 3MOR B 24 340 UNP Q6R7Z5 Q6R7Z5_9TRYP 24 340 SEQRES 1 A 317 LEU VAL ALA GLU ASP ALA PRO VAL LEU SER LYS ALA PHE SEQRES 2 A 317 VAL ASP ARG VAL ASN ARG LEU ASN ARG GLY ILE TRP LYS SEQRES 3 A 317 ALA LYS TYR ASP GLY VAL MET GLN ASN ILE THR LEU ARG SEQRES 4 A 317 GLU ALA LYS ARG LEU ASN GLY VAL ILE LYS LYS ASN ASN SEQRES 5 A 317 ASN ALA SER ILE LEU PRO LYS ARG ARG PHE THR GLU GLU SEQRES 6 A 317 GLU ALA ARG ALA PRO LEU PRO SER SER PHE ASP SER ALA SEQRES 7 A 317 GLU ALA TRP PRO ASN CYS PRO THR ILE PRO GLN ILE ALA SEQRES 8 A 317 ASP GLN SER ALA CYS GLY SER CYS TRP ALA VAL ALA ALA SEQRES 9 A 317 ALA SER ALA MET SER ASP ARG PHE CYS THR MET GLY GLY SEQRES 10 A 317 VAL GLN ASP VAL HIS ILE SER ALA GLY ASP LEU LEU ALA SEQRES 11 A 317 CYS CYS SER ASP CYS GLY ASP GLY CYS ASN GLY GLY ASP SEQRES 12 A 317 PRO ASP ARG ALA TRP ALA TYR PHE SER SER THR GLY LEU SEQRES 13 A 317 VAL SER ASP TYR CYS GLN PRO TYR PRO PHE PRO HIS CYS SEQRES 14 A 317 SER HIS HIS SER LYS SER LYS ASN GLY TYR PRO PRO CYS SEQRES 15 A 317 SER GLN PHE ASN PHE ASP THR PRO LYS CYS ASN TYR THR SEQRES 16 A 317 CYS ASP ASP PRO THR ILE PRO VAL VAL ASN TYR ARG SER SEQRES 17 A 317 TRP THR SER TYR ALA LEU GLN GLY GLU ASP ASP TYR MET SEQRES 18 A 317 ARG GLU LEU PHE PHE ARG GLY PRO PHE GLU VAL ALA PHE SEQRES 19 A 317 ASP VAL TYR GLU ASP PHE ILE ALA TYR ASN SER GLY VAL SEQRES 20 A 317 TYR HIS HIS VAL SER GLY GLN TYR LEU GLY GLY HIS ALA SEQRES 21 A 317 VAL ARG LEU VAL GLY TRP GLY THR SER ASN GLY VAL PRO SEQRES 22 A 317 TYR TRP LYS ILE ALA ASN SER TRP ASN THR GLU TRP GLY SEQRES 23 A 317 MET ASP GLY TYR PHE LEU ILE ARG ARG GLY SER SER GLU SEQRES 24 A 317 CYS GLY ILE GLU ASP GLY GLY SER ALA GLY ILE PRO LEU SEQRES 25 A 317 ALA PRO ASN THR ALA SEQRES 1 B 317 LEU VAL ALA GLU ASP ALA PRO VAL LEU SER LYS ALA PHE SEQRES 2 B 317 VAL ASP ARG VAL ASN ARG LEU ASN ARG GLY ILE TRP LYS SEQRES 3 B 317 ALA LYS TYR ASP GLY VAL MET GLN ASN ILE THR LEU ARG SEQRES 4 B 317 GLU ALA LYS ARG LEU ASN GLY VAL ILE LYS LYS ASN ASN SEQRES 5 B 317 ASN ALA SER ILE LEU PRO LYS ARG ARG PHE THR GLU GLU SEQRES 6 B 317 GLU ALA ARG ALA PRO LEU PRO SER SER PHE ASP SER ALA SEQRES 7 B 317 GLU ALA TRP PRO ASN CYS PRO THR ILE PRO GLN ILE ALA SEQRES 8 B 317 ASP GLN SER ALA CYS GLY SER CYS TRP ALA VAL ALA ALA SEQRES 9 B 317 ALA SER ALA MET SER ASP ARG PHE CYS THR MET GLY GLY SEQRES 10 B 317 VAL GLN ASP VAL HIS ILE SER ALA GLY ASP LEU LEU ALA SEQRES 11 B 317 CYS CYS SER ASP CYS GLY ASP GLY CYS ASN GLY GLY ASP SEQRES 12 B 317 PRO ASP ARG ALA TRP ALA TYR PHE SER SER THR GLY LEU SEQRES 13 B 317 VAL SER ASP TYR CYS GLN PRO TYR PRO PHE PRO HIS CYS SEQRES 14 B 317 SER HIS HIS SER LYS SER LYS ASN GLY TYR PRO PRO CYS SEQRES 15 B 317 SER GLN PHE ASN PHE ASP THR PRO LYS CYS ASN TYR THR SEQRES 16 B 317 CYS ASP ASP PRO THR ILE PRO VAL VAL ASN TYR ARG SER SEQRES 17 B 317 TRP THR SER TYR ALA LEU GLN GLY GLU ASP ASP TYR MET SEQRES 18 B 317 ARG GLU LEU PHE PHE ARG GLY PRO PHE GLU VAL ALA PHE SEQRES 19 B 317 ASP VAL TYR GLU ASP PHE ILE ALA TYR ASN SER GLY VAL SEQRES 20 B 317 TYR HIS HIS VAL SER GLY GLN TYR LEU GLY GLY HIS ALA SEQRES 21 B 317 VAL ARG LEU VAL GLY TRP GLY THR SER ASN GLY VAL PRO SEQRES 22 B 317 TYR TRP LYS ILE ALA ASN SER TRP ASN THR GLU TRP GLY SEQRES 23 B 317 MET ASP GLY TYR PHE LEU ILE ARG ARG GLY SER SER GLU SEQRES 24 B 317 CYS GLY ILE GLU ASP GLY GLY SER ALA GLY ILE PRO LEU SEQRES 25 B 317 ALA PRO ASN THR ALA MODRES 3MOR ASN B 216 ASN GLYCOSYLATION SITE MODRES 3MOR ASN A 216 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET GOL A 3 6 HET GOL A 4 6 HET NA A 1 1 HET GOL A 341 6 HET GOL B 1 6 HET GOL B 2 6 HET GOL B 5 6 HET NA B 341 1 HET CL B 342 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 7 NA 2(NA 1+) FORMUL 13 CL CL 1- FORMUL 14 HOH *54(H2 O) HELIX 1 1 THR A 86 ARG A 91 1 6 HELIX 2 2 SER A 100 TRP A 104 1 5 HELIX 3 3 SER A 121 MET A 138 1 18 HELIX 4 4 SER A 147 CYS A 155 1 9 HELIX 5 5 ASP A 160 GLY A 164 5 5 HELIX 6 6 ASP A 166 THR A 177 1 12 HELIX 7 7 PRO A 204 PHE A 208 5 5 HELIX 8 8 GLY A 239 GLY A 251 1 13 HELIX 9 9 ASP A 262 ILE A 264 5 3 HELIX 10 10 SER A 321 ILE A 325 5 5 HELIX 11 11 THR B 86 ARG B 91 1 6 HELIX 12 12 SER B 100 TRP B 104 1 5 HELIX 13 13 SER B 121 MET B 138 1 18 HELIX 14 14 SER B 147 CYS B 155 1 9 HELIX 15 15 ASP B 160 GLY B 164 5 5 HELIX 16 16 ASP B 166 THR B 177 1 12 HELIX 17 17 PRO B 204 PHE B 208 5 5 HELIX 18 18 GLY B 239 GLY B 251 1 13 HELIX 19 19 ASP B 262 ILE B 264 5 3 HELIX 20 20 SER B 321 ILE B 325 5 5 SHEET 1 A 5 PHE A 98 ASP A 99 0 SHEET 2 A 5 TYR A 278 SER A 292 -1 O TRP A 289 N PHE A 98 SHEET 3 A 5 PHE A 253 TYR A 260 -1 N VAL A 259 O LEU A 279 SHEET 4 A 5 GLY A 329 PRO A 334 -1 O SER A 330 N GLU A 254 SHEET 5 A 5 SER A 231 LEU A 237 -1 N TYR A 235 O ALA A 331 SHEET 1 B 5 PHE A 98 ASP A 99 0 SHEET 2 B 5 TYR A 278 SER A 292 -1 O TRP A 289 N PHE A 98 SHEET 3 B 5 VAL A 295 ALA A 301 -1 O ALA A 301 N ARG A 285 SHEET 4 B 5 TYR A 313 ARG A 317 -1 O ILE A 316 N TRP A 298 SHEET 5 B 5 VAL A 270 TYR A 271 1 N TYR A 271 O LEU A 315 SHEET 1 C 5 PHE B 98 ASP B 99 0 SHEET 2 C 5 TYR B 278 SER B 292 -1 O TRP B 289 N PHE B 98 SHEET 3 C 5 PHE B 253 TYR B 260 -1 N VAL B 259 O LEU B 279 SHEET 4 C 5 GLY B 329 PRO B 334 -1 O SER B 330 N GLU B 254 SHEET 5 C 5 SER B 231 LEU B 237 -1 N LEU B 237 O GLY B 329 SHEET 1 D 5 PHE B 98 ASP B 99 0 SHEET 2 D 5 TYR B 278 SER B 292 -1 O TRP B 289 N PHE B 98 SHEET 3 D 5 VAL B 295 ALA B 301 -1 O ALA B 301 N ARG B 285 SHEET 4 D 5 TYR B 313 ARG B 317 -1 O PHE B 314 N ILE B 300 SHEET 5 D 5 VAL B 270 TYR B 271 1 N TYR B 271 O LEU B 315 SSBOND 1 CYS A 107 CYS A 136 1555 1555 2.04 SSBOND 2 CYS A 119 CYS A 162 1555 1555 2.04 SSBOND 3 CYS A 154 CYS A 215 1555 1555 2.04 SSBOND 4 CYS A 155 CYS A 158 1555 1555 2.04 SSBOND 5 CYS A 184 CYS A 219 1555 1555 2.05 SSBOND 6 CYS A 192 CYS A 205 1555 1555 2.04 SSBOND 7 CYS B 107 CYS B 136 1555 1555 2.03 SSBOND 8 CYS B 119 CYS B 162 1555 1555 2.04 SSBOND 9 CYS B 154 CYS B 215 1555 1555 2.04 SSBOND 10 CYS B 155 CYS B 158 1555 1555 2.03 SSBOND 11 CYS B 184 CYS B 219 1555 1555 2.04 SSBOND 12 CYS B 192 CYS B 205 1555 1555 2.04 LINK ND2 ASN A 216 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 216 C1 NAG D 1 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK NA NA A 1 O GLN A 238 1555 1555 2.85 LINK O GLN B 238 NA NA B 341 1555 1555 2.99 CRYST1 53.910 75.490 75.600 90.00 104.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018549 0.000000 0.004901 0.00000 SCALE2 0.000000 0.013247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013681 0.00000