HEADER PROTEIN TRANSPORT 26-APR-10 3MP7 TITLE LATERAL OPENING OF A TRANSLOCON UPON ENTRY OF PROTEIN SUGGESTS THE TITLE 2 MECHANISM OF INSERTION INTO MEMBRANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT HOMOLOG; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: SECY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(AI); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 12 ORGANISM_TAXID: 2261; SOURCE 13 GENE: SECE; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(AI); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PROTEIN TRANSPORT, MEMBRANE PROTEIN COMPLEX, PREPROTEIN TRANSLOCASE, KEYWDS 2 MEMBRANE INSERTION, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, CENTER FOR STRUCTURES OF MEMBRANE PROTEINS, CSMP EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA,R.M.STROUD,CENTER FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) REVDAT 5 06-SEP-23 3MP7 1 SEQADV REVDAT 4 08-NOV-17 3MP7 1 REMARK REVDAT 3 04-APR-12 3MP7 1 REMARK VERSN REVDAT 2 20-OCT-10 3MP7 1 JRNL REVDAT 1 06-OCT-10 3MP7 0 JRNL AUTH P.F.EGEA,R.M.STROUD JRNL TITL LATERAL OPENING OF A TRANSLOCON UPON ENTRY OF PROTEIN JRNL TITL 2 SUGGESTS THE MECHANISM OF INSERTION INTO MEMBRANES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 17182 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20855604 JRNL DOI 10.1073/PNAS.1012556107 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1375 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 320 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2840 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 286 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 34 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68200 REMARK 3 B22 (A**2) : -3.13600 REMARK 3 B33 (A**2) : 3.81900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.615 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.842 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.793 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3479 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 4740 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1124 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 42 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 515 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 3479 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 480 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4175 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.62 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.02 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08; NULL REMARK 200 TEMPERATURE (KELVIN) : 77; 77 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97966, 0.97958, 0.96863; REMARK 200 1.115872 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.67200 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1RH5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000-PEG8000 15-25%, MES 100MM PH REMARK 280 6.2, CA OR MG ACETATE 50-200MM, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.73000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.73000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.62000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.62000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.73000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.62000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.73000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.62000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 7 REMARK 465 TYR A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 ARG A 12 REMARK 465 TRP A 13 REMARK 465 PHE A 14 REMARK 465 PRO A 15 REMARK 465 GLU A 16 REMARK 465 VAL A 17 REMARK 465 GLU A 18 REMARK 465 ARG A 19 REMARK 465 PRO A 20 REMARK 465 LYS A 21 REMARK 465 ARG A 22 REMARK 465 ARG A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 91 REMARK 465 VAL A 92 REMARK 465 GLY A 93 REMARK 465 SER A 94 REMARK 465 GLU A 95 REMARK 465 ILE A 96 REMARK 465 ILE A 97 REMARK 465 LYS A 98 REMARK 465 LEU A 99 REMARK 465 ASP A 100 REMARK 465 LEU A 101 REMARK 465 ALA A 102 REMARK 465 ASN A 103 REMARK 465 PRO A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ARG A 107 REMARK 465 ARG A 108 REMARK 465 PHE A 109 REMARK 465 TYR A 110 REMARK 465 GLN A 111 REMARK 465 ALA A 112 REMARK 465 LEU A 113 REMARK 465 GLY A 139 REMARK 465 VAL A 140 REMARK 465 ASP A 141 REMARK 465 VAL A 142 REMARK 465 THR A 143 REMARK 465 TYR A 144 REMARK 465 ILE A 202 REMARK 465 ILE A 203 REMARK 465 ASP A 204 REMARK 465 PRO A 265 REMARK 465 LEU A 266 REMARK 465 GLY A 267 REMARK 465 TYR A 268 REMARK 465 ARG A 269 REMARK 465 GLY A 270 REMARK 465 VAL A 271 REMARK 465 THR A 272 REMARK 465 VAL A 273 REMARK 465 ARG A 274 REMARK 465 GLY A 275 REMARK 465 SER A 276 REMARK 465 GLN A 380 REMARK 465 LEU A 381 REMARK 465 GLN A 382 REMARK 465 ARG A 383 REMARK 465 ALA A 384 REMARK 465 GLY A 385 REMARK 465 LEU A 386 REMARK 465 GLN A 387 REMARK 465 VAL A 401 REMARK 465 LEU A 402 REMARK 465 GLN A 403 REMARK 465 ARG A 404 REMARK 465 TYR A 405 REMARK 465 ILE A 406 REMARK 465 LEU A 471 REMARK 465 VAL A 472 REMARK 465 PRO A 473 REMARK 465 ARG A 474 REMARK 465 GLY A 475 REMARK 465 SER A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 ARG B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 55 CG1 CG2 CD1 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 138 CG1 CG2 REMARK 470 TYR A 218 OH REMARK 470 TRP A 229 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 229 CZ3 CH2 REMARK 470 ILE A 232 CG1 CG2 CD1 REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 240 CG OD1 OD2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 264 CG1 CG2 CD1 REMARK 470 ARG A 379 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 388 CG1 CG2 CD1 REMARK 470 PRO A 389 CG CD REMARK 470 PHE A 391 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 394 CG OD1 OD2 REMARK 470 PRO A 395 CG CD REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 470 THR A 397 OG1 CG2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 58 CG1 CG2 CD1 REMARK 470 LEU B 59 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 -73.05 -87.09 REMARK 500 GLU A 53 -60.09 59.60 REMARK 500 ASP A 57 99.50 65.67 REMARK 500 PHE A 61 -44.71 71.02 REMARK 500 ALA A 67 -155.08 49.63 REMARK 500 ARG A 69 118.40 -165.84 REMARK 500 LEU A 74 38.96 -95.62 REMARK 500 THR A 75 9.87 -68.28 REMARK 500 LEU A 88 37.67 -75.21 REMARK 500 GLN A 89 -58.11 -160.44 REMARK 500 ILE A 130 -38.47 -159.68 REMARK 500 ALA A 134 -80.59 50.95 REMARK 500 ARG A 137 -109.28 53.42 REMARK 500 LYS A 170 -42.50 -133.26 REMARK 500 ASP A 199 109.95 64.91 REMARK 500 PRO A 200 79.77 -69.38 REMARK 500 PRO A 210 -37.73 -24.84 REMARK 500 ALA A 211 124.73 73.83 REMARK 500 ASP A 227 79.79 58.81 REMARK 500 LEU A 228 63.70 -100.24 REMARK 500 TRP A 229 54.05 -169.11 REMARK 500 ILE A 232 -127.83 -78.45 REMARK 500 TYR A 233 76.09 60.60 REMARK 500 ARG A 234 134.43 80.45 REMARK 500 ARG A 280 -33.49 -27.87 REMARK 500 PHE A 281 -70.21 85.68 REMARK 500 SER A 285 -124.52 52.84 REMARK 500 ASP A 307 -80.22 -81.62 REMARK 500 LEU A 309 -65.46 179.98 REMARK 500 PRO A 319 -164.22 -70.58 REMARK 500 THR A 320 -179.31 67.08 REMARK 500 SER A 323 109.59 -59.45 REMARK 500 SER A 326 81.05 160.48 REMARK 500 ARG A 336 65.17 -63.26 REMARK 500 PHE A 358 -43.43 -172.22 REMARK 500 ASP A 373 -54.90 82.10 REMARK 500 ARG A 375 2.94 -66.40 REMARK 500 ILE A 377 -78.35 -70.12 REMARK 500 PHE A 391 -52.07 -142.93 REMARK 500 THR A 432 13.65 132.74 REMARK 500 LEU A 465 46.23 -84.42 REMARK 500 PHE A 466 -23.05 -162.02 REMARK 500 ALA A 468 -83.17 -154.06 REMARK 500 HIS B 9 1.55 -69.12 REMARK 500 ASN B 25 102.55 145.47 REMARK 500 TRP B 26 -5.70 -47.67 REMARK 500 ALA B 28 -61.59 -95.16 REMARK 500 LEU B 59 55.98 -93.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RH5 RELATED DB: PDB REMARK 900 RELATED ID: 2YXQ RELATED DB: PDB REMARK 900 RELATED ID: 2YXR RELATED DB: PDB REMARK 900 RELATED ID: 2ZJS RELATED DB: PDB REMARK 900 RELATED ID: 3DKN RELATED DB: PDB REMARK 900 RELATED ID: CSMP-1154S RELATED DB: TARGETTRACK REMARK 900 RELATED ID: CSMP-1152S RELATED DB: TARGETTRACK DBREF 3MP7 A 1 468 UNP Q8U019 SECY_PYRFU 1 468 DBREF 3MP7 B 0 61 UNP Q8TZK2 SECE_PYRFU 1 61 SEQADV 3MP7 GLY A 469 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 THR A 470 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 LEU A 471 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 VAL A 472 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 PRO A 473 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 ARG A 474 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 GLY A 475 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 SER A 476 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 HIS A 477 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 HIS A 478 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 HIS A 479 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 HIS A 480 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 HIS A 481 UNP Q8U019 EXPRESSION TAG SEQADV 3MP7 HIS A 482 UNP Q8U019 EXPRESSION TAG SEQRES 1 A 482 MET GLY ALA ARG ASP ILE ILE TYR ALA LEU GLU ARG TRP SEQRES 2 A 482 PHE PRO GLU VAL GLU ARG PRO LYS ARG ARG VAL PRO LEU SEQRES 3 A 482 ARG GLU ARG PHE MET TRP THR GLY VAL ALA LEU ILE LEU SEQRES 4 A 482 TYR TYR VAL LEU ALA GLU ILE PRO VAL TYR GLY ILE PRO SEQRES 5 A 482 GLU ARG ILE GLN ASP TYR PHE GLN PHE LEU ARG VAL VAL SEQRES 6 A 482 LEU ALA GLY ARG ASN GLY SER ILE LEU THR LEU GLY ILE SEQRES 7 A 482 GLY PRO ILE VAL THR ALA GLY ILE ILE LEU GLN LEU LEU SEQRES 8 A 482 VAL GLY SER GLU ILE ILE LYS LEU ASP LEU ALA ASN PRO SEQRES 9 A 482 GLU ASP ARG ARG PHE TYR GLN ALA LEU GLN ARG VAL PHE SEQRES 10 A 482 SER VAL PHE MET CYS PHE PHE GLU ALA ALA VAL TRP ILE SEQRES 11 A 482 LEU GLY GLY ALA PHE GLY ARG VAL GLY VAL ASP VAL THR SEQRES 12 A 482 TYR ALA ILE ALA VAL LEU MET ILE LEU GLN LEU ALA MET SEQRES 13 A 482 GLY GLY ILE VAL LEU ILE ILE LEU ASP GLU LEU VAL SER SEQRES 14 A 482 LYS TRP GLY ILE GLY SER GLY ILE SER LEU PHE ILE ALA SEQRES 15 A 482 ALA GLY VAL SER GLN THR ILE LEU THR ARG SER LEU ASN SEQRES 16 A 482 PRO LEU THR ASP PRO ASN ILE ILE ASP PRO LEU THR GLY SEQRES 17 A 482 GLN PRO ALA ILE VAL GLY ALA ILE PRO TYR PHE ILE GLN SEQRES 18 A 482 HIS ILE LEU LYS GLY ASP LEU TRP GLY ALA ILE TYR ARG SEQRES 19 A 482 GLY GLY SER ALA PRO ASP MET LEU SER VAL VAL ALA THR SEQRES 20 A 482 ILE VAL VAL PHE PHE ILE VAL VAL TYR PHE GLU SER MET SEQRES 21 A 482 ARG VAL GLU ILE PRO LEU GLY TYR ARG GLY VAL THR VAL SEQRES 22 A 482 ARG GLY SER TYR PRO ILE ARG PHE LEU TYR VAL SER ASN SEQRES 23 A 482 ILE PRO ILE ILE LEU THR PHE ALA LEU TYR ALA ASN ILE SEQRES 24 A 482 GLN LEU TRP ALA ARG VAL LEU ASP ARG LEU GLY HIS PRO SEQRES 25 A 482 TRP LEU GLY ARG PHE ASP PRO THR THR GLY SER PRO ILE SEQRES 26 A 482 SER GLY PHE VAL LEU TYR VAL ILE PRO PRO ARG ASN ILE SEQRES 27 A 482 PHE SER VAL ILE ASP ASN PRO VAL ARG ALA ILE VAL TYR SEQRES 28 A 482 LEU ILE LEU THR VAL ILE PHE SER LEU LEU PHE GLY TYR SEQRES 29 A 482 LEU TRP VAL GLU LEU THR GLY LEU ASP ALA ARG SER ILE SEQRES 30 A 482 ALA ARG GLN LEU GLN ARG ALA GLY LEU GLN ILE PRO GLY SEQRES 31 A 482 PHE ARG ARG ASP PRO ARG THR LEU GLU LYS VAL LEU GLN SEQRES 32 A 482 ARG TYR ILE PRO TYR VAL THR PHE TRP GLY SER LEU THR SEQRES 33 A 482 VAL ALA LEU ILE ALA VAL LEU ALA ASP PHE LEU GLY ALA SEQRES 34 A 482 LEU GLY THR GLY THR GLY ILE LEU LEU THR VAL GLY ILE SEQRES 35 A 482 LEU TYR ARG PHE TYR GLU GLU ILE ALA ARG GLU GLN ILE SEQRES 36 A 482 THR GLU MET PHE PRO ALA LEU ARG LYS LEU PHE GLY ALA SEQRES 37 A 482 GLY THR LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS SEQRES 38 A 482 HIS SEQRES 1 B 61 MET ALA GLU LEU GLN GLU ARG ILE ARG HIS PHE TRP LYS SEQRES 2 B 61 GLU SER ARG ARG ALA PHE LEU VAL THR LYS LYS PRO ASN SEQRES 3 B 61 TRP ALA THR TYR LYS ARG ALA ALA LYS ILE THR GLY LEU SEQRES 4 B 61 GLY ILE ILE LEU ILE GLY LEU ILE GLY MET LEU ILE ARG SEQRES 5 B 61 ILE VAL GLY ILE LEU ILE LEU GLY GLY HELIX 1 1 ARG A 29 ILE A 46 1 18 HELIX 2 2 ILE A 78 LEU A 88 1 11 HELIX 3 3 GLN A 114 GLY A 132 1 19 HELIX 4 4 ILE A 146 GLY A 172 1 27 HELIX 5 5 SER A 175 LEU A 194 1 20 HELIX 6 6 GLY A 214 GLY A 226 1 13 HELIX 7 7 ASP A 240 MET A 260 1 21 HELIX 8 8 ASN A 286 ARG A 308 1 23 HELIX 9 9 PHE A 328 VAL A 332 5 5 HELIX 10 10 PHE A 339 ASN A 344 1 6 HELIX 11 11 ASN A 344 THR A 370 1 27 HELIX 12 12 ASP A 373 ILE A 377 5 5 HELIX 13 13 TYR A 408 GLY A 428 1 21 HELIX 14 14 GLY A 433 MET A 458 1 26 HELIX 15 15 MET A 458 LEU A 465 1 8 HELIX 16 16 HIS B 9 ARG B 15 1 7 HELIX 17 17 ARG B 15 THR B 21 1 7 HELIX 18 18 ALA B 28 LEU B 59 1 32 CISPEP 1 GLY A 226 ASP A 227 0 -1.47 CISPEP 2 TRP A 229 GLY A 230 0 3.20 CISPEP 3 TYR A 233 ARG A 234 0 8.12 CISPEP 4 ARG A 234 GLY A 235 0 4.55 CISPEP 5 GLY A 236 SER A 237 0 2.77 CISPEP 6 SER A 237 ALA A 238 0 7.66 CISPEP 7 ALA A 468 GLY A 469 0 -0.58 CISPEP 8 LYS B 22 LYS B 23 0 -5.92 CISPEP 9 PRO B 24 ASN B 25 0 3.50 CRYST1 71.240 141.570 235.460 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004247 0.00000