HEADER HISTONE BINDING PROTEIN 26-APR-10 3MP8 TITLE CRYSTAL STRUCTURE OF SGF29 TUDOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,LINKER,SAGA-ASSOCIATED COMPND 3 FACTOR 29; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MBP,SGF29; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN, SAGA- COMPND 8 ASSOCIATED FACTOR 29 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12, UNIDENTIFIED, SOURCE 3 SACCHAROMYCES CEREVISIAE S288C; SOURCE 4 ORGANISM_TAXID: 83333, 32644, 559292; SOURCE 5 STRAIN: K12, S288C; SOURCE 6 GENE: MALE, SGF29; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS HISTONE, TUDOR DOMAIN, SAGA, HISTONE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,M.WU,J.RUAN,J.ZANG REVDAT 7 01-NOV-23 3MP8 1 HETSYN REVDAT 6 29-JUL-20 3MP8 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 HETSYN FORMUL LINK SITE REVDAT 6 3 1 ATOM REVDAT 5 08-NOV-17 3MP8 1 REMARK REVDAT 4 21-JUN-17 3MP8 1 SOURCE REVDAT 3 12-JUN-13 3MP8 1 JRNL VERSN REVDAT 2 29-JUN-11 3MP8 1 JRNL REVDAT 1 04-MAY-11 3MP8 0 JRNL AUTH C.BIAN,C.XU,J.RUAN,K.K.LEE,T.L.BURKE,W.TEMPEL,D.BARSYTE, JRNL AUTH 2 J.LI,M.WU,B.O.ZHOU,B.E.FLEHARTY,A.PAULSON,A.ALLALI-HASSANI, JRNL AUTH 3 J.Q.ZHOU,G.MER,P.A.GRANT,J.L.WORKMAN,J.ZANG,J.MIN JRNL TITL SGF29 BINDS HISTONE H3K4ME2/3 AND IS REQUIRED FOR SAGA JRNL TITL 2 COMPLEX RECRUITMENT AND HISTONE H3 ACETYLATION JRNL REF EMBO J. V. 30 2829 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21685874 JRNL DOI 10.1038/EMBOJ.2011.193 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 37279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4245 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5764 ; 0.986 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 3.881 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;36.345 ;25.137 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;12.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3207 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3MP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000058827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : 0.25800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.21500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.21500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1251 REMARK 465 ALA A 1252 REMARK 465 LEU A 1253 REMARK 465 ALA A 1254 REMARK 465 ASN A 1255 REMARK 465 LEU A 1256 REMARK 465 ALA A 1257 REMARK 465 ARG A 1258 REMARK 465 LYS A 1259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 880 O ASP A 1230 3645 2.14 REMARK 500 OE2 GLU A 1234 O HOH A 171 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 793 -160.46 -107.10 REMARK 500 ALA A 906 -76.95 -85.53 REMARK 500 ASP A 947 -168.56 -116.19 REMARK 500 LYS A 977 -2.42 80.62 REMARK 500 ARG A1137 49.96 -149.58 REMARK 500 ASP A1141 42.07 -80.16 REMARK 500 ASP A1167 -168.55 -73.75 REMARK 500 GLU A1207 -5.83 79.65 REMARK 500 ASP A1230 22.12 -77.26 REMARK 500 GLU A1234 -68.54 -145.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1269 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 102 O REMARK 620 2 GLU A 782 OE2 85.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1268 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 120 O REMARK 620 2 HOH A 337 O 86.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1267 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 261 O REMARK 620 2 HOH A 266 O 145.7 REMARK 620 3 HOH A 348 O 93.2 108.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1271 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 338 O REMARK 620 2 ASP A1230 OD2 103.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MP1 RELATED DB: PDB REMARK 900 RELATED ID: 3MP6 RELATED DB: PDB DBREF 3MP8 A 739 1099 UNP P0AEX9 MALE_ECOLI 27 387 DBREF 3MP8 A 1100 1112 PDB 3MP8 3MP8 1100 1112 DBREF 3MP8 A 1113 1259 UNP P25554 SGF29_YEAST 113 259 SEQADV 3MP8 MET A 738 UNP P0AEX9 INITIATING METHIONINE SEQRES 1 A 522 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 522 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 522 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 522 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 522 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 522 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 522 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 522 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 522 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 522 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 522 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 522 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 522 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 522 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 522 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 522 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 522 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 522 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 522 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 522 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 522 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 522 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 522 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 522 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 522 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 522 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 522 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 522 ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU ALA ALA SEQRES 29 A 522 ALA GLN THR ASN ALA ALA ALA GLU PHE GLY SER SER TYR SEQRES 30 A 522 TRP THR SER GLU TYR ASN PRO ASN ALA PRO ILE LEU VAL SEQRES 31 A 522 GLY SER GLU VAL ALA TYR LYS PRO ARG ARG GLY SER ALA SEQRES 32 A 522 ASP GLY GLU TRP ILE GLN CYS GLU VAL LEU LYS VAL VAL SEQRES 33 A 522 ALA ASP GLY THR ARG PHE GLU VAL ARG ASP PRO GLU PRO SEQRES 34 A 522 ASP GLU LEU GLY ASN SER GLY LYS VAL TYR LYS CYS ASN SEQRES 35 A 522 ARG LYS GLU LEU LEU LEU ILE PRO PRO GLY PHE PRO THR SEQRES 36 A 522 LYS ASN TYR PRO PRO GLY THR LYS VAL LEU ALA ARG TYR SEQRES 37 A 522 PRO GLU THR THR THR PHE TYR PRO ALA ILE VAL ILE GLY SEQRES 38 A 522 THR LYS ARG ASP GLY THR CYS ARG LEU ARG PHE ASP GLY SEQRES 39 A 522 GLU GLU GLU VAL ASP LYS GLU THR GLU VAL THR ARG ARG SEQRES 40 A 522 LEU VAL LEU PRO SER PRO THR ALA LEU ALA ASN LEU ALA SEQRES 41 A 522 ARG LYS HET GLC B 1 12 HET GLC B 2 11 HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HET GOL A 6 6 HET GOL A 7 6 HET GOL A 8 6 HET GOL A 9 6 HET GOL A1260 6 HET SO4 A1261 5 HET SO4 A1262 5 HET SO4 A1263 5 HET SO4 A1264 5 HET SO4 A1265 5 HET SO4 A1266 5 HET NA A1267 1 HET NA A1268 1 HET NA A1269 1 HET NA A1270 1 HET NA A1271 1 HET ACY A1272 4 HET ACY A1273 4 HET ACY A1274 4 HET 4BZ A1275 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM ACY ACETIC ACID HETNAM 4BZ 4-(HYDROXYMETHYL)BENZAMIDINE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 GOL 9(C3 H8 O3) FORMUL 12 SO4 6(O4 S 2-) FORMUL 18 NA 5(NA 1+) FORMUL 23 ACY 3(C2 H4 O2) FORMUL 26 4BZ C8 H10 N2 O FORMUL 27 HOH *436(H2 O) HELIX 1 1 GLY A 754 GLY A 770 1 17 HELIX 2 2 LYS A 780 ALA A 790 1 11 HELIX 3 3 ARG A 804 SER A 811 1 8 HELIX 4 4 ASP A 820 ASP A 825 1 6 HELIX 5 5 TYR A 828 VAL A 835 1 8 HELIX 6 6 THR A 866 GLU A 868 5 3 HELIX 7 7 GLU A 869 ALA A 879 1 11 HELIX 8 8 GLU A 891 PHE A 894 5 4 HELIX 9 9 THR A 895 ASP A 902 1 8 HELIX 10 10 ASN A 923 ASN A 939 1 17 HELIX 11 11 ASP A 947 LYS A 957 1 11 HELIX 12 12 GLY A 966 TRP A 968 5 3 HELIX 13 13 ALA A 969 LYS A 977 1 9 HELIX 14 14 ASN A 1010 TYR A 1021 1 12 HELIX 15 15 THR A 1024 LYS A 1035 1 12 HELIX 16 16 LEU A 1042 ALA A 1050 1 9 HELIX 17 17 ASP A 1052 GLY A 1065 1 14 HELIX 18 18 GLN A 1073 SER A 1090 1 18 HELIX 19 19 THR A 1094 ALA A 1106 1 13 HELIX 20 20 THR A 1242 ARG A 1244 5 3 SHEET 1 A 6 VAL A 773 GLU A 776 0 SHEET 2 A 6 LEU A 745 TRP A 748 1 N ILE A 747 O THR A 774 SHEET 3 A 6 ILE A 797 ALA A 801 1 O ILE A 797 N TRP A 748 SHEET 4 A 6 PHE A 996 ILE A1004 -1 O GLY A1003 N ILE A 798 SHEET 5 A 6 TYR A 844 GLU A 849 -1 N GLU A 849 O GLY A 998 SHEET 6 A 6 ALA A1039 VAL A1040 -1 O ALA A1039 N VAL A 848 SHEET 1 B 5 VAL A 773 GLU A 776 0 SHEET 2 B 5 LEU A 745 TRP A 748 1 N ILE A 747 O THR A 774 SHEET 3 B 5 ILE A 797 ALA A 801 1 O ILE A 797 N TRP A 748 SHEET 4 B 5 PHE A 996 ILE A1004 -1 O GLY A1003 N ILE A 798 SHEET 5 B 5 GLU A1066 ILE A1067 1 O GLU A1066 N VAL A 997 SHEET 1 C 2 ARG A 836 TYR A 837 0 SHEET 2 C 2 LYS A 840 LEU A 841 -1 O LYS A 840 N TYR A 837 SHEET 1 D 4 SER A 883 LEU A 885 0 SHEET 2 D 4 THR A 960 ASN A 965 1 O ALA A 961 N SER A 883 SHEET 3 D 4 SER A 852 ASN A 856 -1 N ASN A 856 O ALA A 961 SHEET 4 D 4 TYR A 980 THR A 983 -1 O THR A 983 N LEU A 853 SHEET 1 E 2 TYR A 905 GLU A 910 0 SHEET 2 E 2 LYS A 913 GLY A 920 -1 O ASP A 915 N LYS A 908 SHEET 1 F 6 LYS A1174 ASN A1179 0 SHEET 2 F 6 ARG A1158 ASP A1163 -1 N VAL A1161 O TYR A1176 SHEET 3 F 6 TRP A1144 VAL A1153 -1 N LEU A1150 O GLU A1160 SHEET 4 F 6 THR A1210 THR A1219 -1 O PHE A1211 N TRP A1144 SHEET 5 F 6 CYS A1225 PHE A1229 -1 O ARG A1226 N ILE A1217 SHEET 6 F 6 THR A1239 VAL A1241 -1 O THR A1239 N LEU A1227 SHEET 1 G 6 LEU A1183 LEU A1185 0 SHEET 2 G 6 GLU A1130 TYR A1133 -1 N ALA A1132 O LEU A1184 SHEET 3 G 6 TRP A1144 VAL A1153 -1 O CYS A1147 N VAL A1131 SHEET 4 G 6 THR A1210 THR A1219 -1 O PHE A1211 N TRP A1144 SHEET 5 G 6 LYS A1200 ARG A1204 -1 N VAL A1201 O ALA A1214 SHEET 6 G 6 VAL A1246 PRO A1248 -1 O LEU A1247 N LEU A1202 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.42 LINK O HOH A 102 NA NA A1269 1555 1555 2.55 LINK O HOH A 120 NA NA A1268 1555 1555 2.46 LINK O HOH A 261 NA NA A1267 1555 1555 2.76 LINK O HOH A 266 NA NA A1267 1555 1555 2.63 LINK O HOH A 337 NA NA A1268 1555 1555 2.64 LINK O HOH A 338 NA NA A1271 1555 1555 2.20 LINK O HOH A 348 NA NA A1267 1555 1555 2.38 LINK OE2 GLU A 782 NA NA A1269 1555 1555 2.37 LINK OD2 ASP A1230 NA NA A1271 1555 1555 3.07 CISPEP 1 ALA A 1123 PRO A 1124 0 -2.41 CRYST1 49.760 95.100 114.430 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008739 0.00000