HEADER SIGNALING PROTEIN 27-APR-10 3MPK TITLE CRYSTAL STRUCTURE OF BORDETELLA PERTUSSIS BVGS PERIPLASMIC VFT2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRULENCE SENSOR PROTEIN BVGS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 286-542; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 257313; SOURCE 4 STRAIN: TOHAMAI; SOURCE 5 GENE: BP1877, BVGS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS VENUS FLYTRAP, SENSOR DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HERROU,C.BOMPARD,R.WINTJENS,E.DUPRE,E.WILLERY,V.VILLERET,C.LOCHT, AUTHOR 2 R.ANTOINE,F.JACOB-DUBUISSON REVDAT 3 21-FEB-24 3MPK 1 REMARK SEQADV REVDAT 2 20-OCT-10 3MPK 1 JRNL REVDAT 1 06-OCT-10 3MPK 0 JRNL AUTH J.HERROU,C.BOMPARD,R.WINTJENS,E.DUPRE,E.WILLERY,V.VILLERET, JRNL AUTH 2 C.LOCHT,R.ANTOINE,F.JACOB-DUBUISSON JRNL TITL PERIPLASMIC DOMAIN OF THE SENSOR-KINASE BVGS REVEALS A NEW JRNL TITL 2 PARADIGM FOR THE VENUS FLYTRAP MECHANISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 17351 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20855615 JRNL DOI 10.1073/PNAS.1006267107 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 18142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1865 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2531 ; 1.934 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 7.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;37.166 ;23.452 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 303 ;13.635 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;22.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1414 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 1.296 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1893 ; 2.209 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 685 ; 3.564 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 5.698 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.480 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 27.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.07 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE (PH 5), 20% MPD REMARK 280 (W/V), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 276 REMARK 465 ARG A 277 REMARK 465 GLY A 278 REMARK 465 SER A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 GLY A 286 REMARK 465 SER A 287 REMARK 465 LEU A 288 REMARK 465 ASP A 289 REMARK 465 PHE A 290 REMARK 465 ALA A 291 REMARK 465 GLY A 527 REMARK 465 SER A 528 REMARK 465 ASP A 529 REMARK 465 GLY A 530 REMARK 465 ASP A 531 REMARK 465 PRO A 532 REMARK 465 ARG A 533 REMARK 465 THR A 534 REMARK 465 TRP A 535 REMARK 465 TYR A 536 REMARK 465 ALA A 537 REMARK 465 TYR A 538 REMARK 465 ARG A 539 REMARK 465 ASN A 540 REMARK 465 GLU A 541 REMARK 465 ILE A 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 299 CB GLU A 299 CG 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 479 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 317 62.00 -110.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 544 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MPL RELATED DB: PDB DBREF 3MPK A 287 542 UNP P16575 BVGS_BORPE 286 541 SEQADV 3MPK MET A 276 UNP P16575 EXPRESSION TAG SEQADV 3MPK ARG A 277 UNP P16575 EXPRESSION TAG SEQADV 3MPK GLY A 278 UNP P16575 EXPRESSION TAG SEQADV 3MPK SER A 279 UNP P16575 EXPRESSION TAG SEQADV 3MPK HIS A 280 UNP P16575 EXPRESSION TAG SEQADV 3MPK HIS A 281 UNP P16575 EXPRESSION TAG SEQADV 3MPK HIS A 282 UNP P16575 EXPRESSION TAG SEQADV 3MPK HIS A 283 UNP P16575 EXPRESSION TAG SEQADV 3MPK HIS A 284 UNP P16575 EXPRESSION TAG SEQADV 3MPK HIS A 285 UNP P16575 EXPRESSION TAG SEQADV 3MPK GLY A 286 UNP P16575 EXPRESSION TAG SEQRES 1 A 267 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER LEU SEQRES 2 A 267 ASP PHE ALA HIS PRO ALA TYR SER ALA ARG GLU GLN GLN SEQRES 3 A 267 TRP MET ALA ASP HIS PRO VAL VAL LYS VAL ALA VAL LEU SEQRES 4 A 267 ASN LEU PHE ALA PRO PHE THR LEU PHE ARG THR ASP GLU SEQRES 5 A 267 GLN PHE GLY GLY ILE SER ALA ALA VAL LEU GLN LEU LEU SEQRES 6 A 267 GLN LEU ARG THR GLY LEU ASP PHE GLU ILE ILE GLY VAL SEQRES 7 A 267 ASP THR VAL GLU GLU LEU ILE ALA LYS LEU ARG SER GLY SEQRES 8 A 267 GLU ALA ASP MET ALA GLY ALA LEU PHE VAL ASN SER ALA SEQRES 9 A 267 ARG GLU SER PHE LEU SER PHE SER ARG PRO TYR VAL ARG SEQRES 10 A 267 ASN GLY MET VAL ILE VAL THR ARG GLN ASP PRO ASP ALA SEQRES 11 A 267 PRO VAL ASP ALA ASP HIS LEU ASP GLY ARG THR VAL ALA SEQRES 12 A 267 LEU VAL ARG ASN SER ALA ALA ILE PRO LEU LEU GLN ARG SEQRES 13 A 267 ARG TYR PRO GLN ALA LYS VAL VAL THR ALA ASP ASN PRO SEQRES 14 A 267 SER GLU ALA MET LEU MET VAL ALA ASN GLY GLN ALA ASP SEQRES 15 A 267 ALA VAL VAL GLN THR GLN ILE SER ALA SER TYR TYR VAL SEQRES 16 A 267 ASN ARG TYR PHE ALA GLY LYS LEU ARG ILE ALA SER ALA SEQRES 17 A 267 LEU ASP LEU PRO PRO ALA GLU ILE ALA LEU ALA THR THR SEQRES 18 A 267 ARG GLY GLN THR GLU LEU MET SER ILE LEU ASN LYS ALA SEQRES 19 A 267 LEU TYR SER ILE SER ASN ASP GLU LEU ALA SER ILE ILE SEQRES 20 A 267 SER ARG TRP ARG GLY SER ASP GLY ASP PRO ARG THR TRP SEQRES 21 A 267 TYR ALA TYR ARG ASN GLU ILE HET GOL A 1 6 HET ACT A 543 4 HET ACT A 2 4 HET GOL A 544 6 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 6 HOH *146(H2 O) HELIX 1 1 SER A 296 HIS A 306 1 11 HELIX 2 2 GLY A 331 GLY A 345 1 15 HELIX 3 3 THR A 355 GLY A 366 1 12 HELIX 4 4 ASN A 377 GLU A 381 5 5 HELIX 5 5 ASP A 408 LEU A 412 5 5 HELIX 6 6 ALA A 424 TYR A 433 1 10 HELIX 7 7 ASN A 443 ASN A 453 1 11 HELIX 8 8 GLN A 463 PHE A 474 1 12 HELIX 9 9 GLN A 499 SER A 512 1 14 HELIX 10 10 SER A 514 ARG A 524 1 11 SHEET 1 A 5 ASP A 347 VAL A 353 0 SHEET 2 A 5 VAL A 308 LEU A 314 1 N VAL A 311 O ILE A 351 SHEET 3 A 5 MET A 370 PHE A 375 1 O MET A 370 N ALA A 312 SHEET 4 A 5 ALA A 489 THR A 496 -1 O ALA A 494 N ALA A 371 SHEET 5 A 5 LEU A 384 PHE A 386 -1 N SER A 385 O THR A 495 SHEET 1 B 5 ASP A 347 VAL A 353 0 SHEET 2 B 5 VAL A 308 LEU A 314 1 N VAL A 311 O ILE A 351 SHEET 3 B 5 MET A 370 PHE A 375 1 O MET A 370 N ALA A 312 SHEET 4 B 5 ALA A 489 THR A 496 -1 O ALA A 494 N ALA A 371 SHEET 5 B 5 VAL A 391 ASN A 393 -1 N ASN A 393 O ALA A 489 SHEET 1 C 2 LEU A 316 PHE A 317 0 SHEET 2 C 2 THR A 321 LEU A 322 -1 O THR A 321 N PHE A 317 SHEET 1 D 5 LYS A 437 ALA A 441 0 SHEET 2 D 5 THR A 416 VAL A 420 1 N VAL A 417 O LYS A 437 SHEET 3 D 5 ALA A 458 THR A 462 1 O ALA A 458 N ALA A 418 SHEET 4 D 5 MET A 395 ARG A 400 -1 N VAL A 396 O GLN A 461 SHEET 5 D 5 LEU A 478 ALA A 483 -1 O ALA A 481 N ILE A 397 CISPEP 1 ALA A 318 PRO A 319 0 -4.59 CISPEP 2 THR A 325 ASP A 326 0 -25.47 SITE 1 AC1 10 ACT A 2 HOH A 69 HOH A 110 HOH A 113 SITE 2 AC1 10 HOH A 131 PHE A 375 SER A 423 ALA A 425 SITE 3 AC1 10 GLN A 461 THR A 462 SITE 1 AC2 6 HOH A 111 HOH A 146 LEU A 314 PHE A 317 SITE 2 AC2 6 LEU A 374 PHE A 375 SITE 1 AC3 7 GOL A 1 HOH A 112 HOH A 114 PHE A 375 SITE 2 AC3 7 VAL A 420 PRO A 444 GLN A 461 SITE 1 AC4 9 HOH A 53 HOH A 83 HOH A 87 HOH A 142 SITE 2 AC4 9 HOH A 143 VAL A 376 ASN A 377 SER A 378 SITE 3 AC4 9 LEU A 428 CRYST1 48.950 95.410 64.020 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015620 0.00000