data_3MSW # _entry.id 3MSW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MSW pdb_00003msw 10.2210/pdb3msw/pdb RCSB RCSB058955 ? ? WWPDB D_1000058955 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 386761 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3MSW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-04-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structures of single-layer beta-sheet proteins evolved from beta-hairpin repeats.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 28 _citation.page_first 1676 _citation.page_last 1689 _citation.year 2019 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 1469-896X _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 31306512 _citation.pdbx_database_id_DOI 10.1002/pro.3683 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Q.' 1 ? primary 'Biancalana, M.' 2 ? primary 'Grant, J.C.' 3 ? primary 'Chiu, H.J.' 4 ? primary 'Jaroszewski, L.' 5 ? primary 'Knuth, M.W.' 6 ? primary 'Lesley, S.A.' 7 ? primary 'Godzik, A.' 8 ? primary 'Elsliger, M.A.' 9 ? primary 'Deacon, A.M.' 10 ? primary 'Wilson, I.A.' 11 0000-0002-6469-2419 # _cell.entry_id 3MSW _cell.length_a 45.570 _cell.length_b 57.550 _cell.length_c 65.030 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MSW _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein' 17218.533 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 non-polymer syn R-1,2-PROPANEDIOL 76.094 3 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative exported protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GTNNGKQFIHNDT(MSE)EGGKLVCREIYA(MSE)NDAASGILNPVK(MSE)YKYSYDTDQQKTVKSTYAWNIFKNTWET ESRTVISRYETETSVEYSVWNKEKGSFDLSKKYIYITDNNNQLIAQYAYK(MSE)NSRTNQWILEKDALTPIYENIYATT R ; _entity_poly.pdbx_seq_one_letter_code_can ;GTNNGKQFIHNDTMEGGKLVCREIYAMNDAASGILNPVKMYKYSYDTDQQKTVKSTYAWNIFKNTWETESRTVISRYETE TSVEYSVWNKEKGSFDLSKKYIYITDNNNQLIAQYAYKMNSRTNQWILEKDALTPIYENIYATTR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 386761 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 THR n 1 3 ASN n 1 4 ASN n 1 5 GLY n 1 6 LYS n 1 7 GLN n 1 8 PHE n 1 9 ILE n 1 10 HIS n 1 11 ASN n 1 12 ASP n 1 13 THR n 1 14 MSE n 1 15 GLU n 1 16 GLY n 1 17 GLY n 1 18 LYS n 1 19 LEU n 1 20 VAL n 1 21 CYS n 1 22 ARG n 1 23 GLU n 1 24 ILE n 1 25 TYR n 1 26 ALA n 1 27 MSE n 1 28 ASN n 1 29 ASP n 1 30 ALA n 1 31 ALA n 1 32 SER n 1 33 GLY n 1 34 ILE n 1 35 LEU n 1 36 ASN n 1 37 PRO n 1 38 VAL n 1 39 LYS n 1 40 MSE n 1 41 TYR n 1 42 LYS n 1 43 TYR n 1 44 SER n 1 45 TYR n 1 46 ASP n 1 47 THR n 1 48 ASP n 1 49 GLN n 1 50 GLN n 1 51 LYS n 1 52 THR n 1 53 VAL n 1 54 LYS n 1 55 SER n 1 56 THR n 1 57 TYR n 1 58 ALA n 1 59 TRP n 1 60 ASN n 1 61 ILE n 1 62 PHE n 1 63 LYS n 1 64 ASN n 1 65 THR n 1 66 TRP n 1 67 GLU n 1 68 THR n 1 69 GLU n 1 70 SER n 1 71 ARG n 1 72 THR n 1 73 VAL n 1 74 ILE n 1 75 SER n 1 76 ARG n 1 77 TYR n 1 78 GLU n 1 79 THR n 1 80 GLU n 1 81 THR n 1 82 SER n 1 83 VAL n 1 84 GLU n 1 85 TYR n 1 86 SER n 1 87 VAL n 1 88 TRP n 1 89 ASN n 1 90 LYS n 1 91 GLU n 1 92 LYS n 1 93 GLY n 1 94 SER n 1 95 PHE n 1 96 ASP n 1 97 LEU n 1 98 SER n 1 99 LYS n 1 100 LYS n 1 101 TYR n 1 102 ILE n 1 103 TYR n 1 104 ILE n 1 105 THR n 1 106 ASP n 1 107 ASN n 1 108 ASN n 1 109 ASN n 1 110 GLN n 1 111 LEU n 1 112 ILE n 1 113 ALA n 1 114 GLN n 1 115 TYR n 1 116 ALA n 1 117 TYR n 1 118 LYS n 1 119 MSE n 1 120 ASN n 1 121 SER n 1 122 ARG n 1 123 THR n 1 124 ASN n 1 125 GLN n 1 126 TRP n 1 127 ILE n 1 128 LEU n 1 129 GLU n 1 130 LYS n 1 131 ASP n 1 132 ALA n 1 133 LEU n 1 134 THR n 1 135 PRO n 1 136 ILE n 1 137 TYR n 1 138 GLU n 1 139 ASN n 1 140 ILE n 1 141 TYR n 1 142 ALA n 1 143 THR n 1 144 THR n 1 145 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF3112 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 25285 / NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LAR6_BACFN _struct_ref.pdbx_db_accession Q5LAR6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TNNGKQFIHNDTMEGGKLVCREIYAMNDAASGILNPVKMYKYSYDTDQQKTVKSTYAWNIFKNTWETESRTVISRYETET SVEYSVWNKEKGSFDLSKKYIYITDNNNQLIAQYAYKMNSRTNQWILEKDALTPIYENIYATTR ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MSW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 145 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LAR6 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 169 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 169 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3MSW _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LAR6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PGR non-polymer . R-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MSW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.33 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '40.000000000% 1,2-propanediol, 0.1M Acetate pH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2010-04-07 _diffrn_detector.details 'FLAT MIRROR (VERTICAL FOCUSING)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SINGLE CRYSTAL SI(111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97925 1.0 3 0.97864 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91837,0.97925,0.97864 # _reflns.entry_id 3MSW _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.310 _reflns.d_resolution_high 1.900 _reflns.number_obs 13924 _reflns.number_all ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.05900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.4700 _reflns.B_iso_Wilson_estimate 25.367 _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.58400 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.500 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3MSW _refine.ls_number_reflns_obs 13888 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.31 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1987 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1974 _refine.ls_R_factor_R_free 0.2266 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 695 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.37 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.9417 _refine.correlation_coeff_Fo_to_Fc_free 0.9115 _refine.B_iso_mean 39.20 _refine.aniso_B[1][1] -0.0073 _refine.aniso_B[2][2] -3.9098 _refine.aniso_B[3][3] 3.9171 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. 1,2-PROPANEDIOL (PGR) AND CHLORIDE MODELED ARE PRESENT CRYO OR PROTEIN SOLUTIONS. 3. THE DENSITY FOR RESIDUES 51-56 ARE POOR AND AMBIGUOUS, THE MODEL IN THIS REGION IS TENTATIVE AND MAY CONTAIN ERRORS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1279 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 28.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1225 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.04 ? 2.00 1667 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 446 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 42 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 175 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1225 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? 5.00 1 'X-RAY DIFFRACTION' SEMIHARMONIC t_omega_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 2618 _refine_ls_shell.R_factor_R_work 0.2088 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2187 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.42 _refine_ls_shell.number_reflns_R_free 150 _refine_ls_shell.number_reflns_all 2768 _refine_ls_shell.R_factor_all 0.2094 # _struct.entry_id 3MSW _struct.title 'Crystal structure of a Protein with unknown function (BF3112) from Bacteroides fragilis NCTC 9343 at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 3MSW # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details 'ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 13 C ? ? ? 1_555 A MSE 14 N ? ? A THR 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A GLU 15 N ? ? A MSE 38 A GLU 39 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A ALA 26 C ? ? ? 1_555 A MSE 27 N ? ? A ALA 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale4 covale both ? A MSE 27 C ? ? ? 1_555 A ASN 28 N ? ? A MSE 51 A ASN 52 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale5 covale both ? A LYS 39 C ? ? ? 1_555 A MSE 40 N ? ? A LYS 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 40 C ? ? ? 1_555 A TYR 41 N ? ? A MSE 64 A TYR 65 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale7 covale both ? A LYS 118 C ? ? ? 1_555 A MSE 119 N ? ? A LYS 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale8 covale both ? A MSE 119 C ? ? ? 1_555 A ASN 120 N ? ? A MSE 143 A ASN 144 1_555 ? ? ? ? ? ? ? 1.349 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 9 ? GLU A 15 ? ILE A 33 GLU A 39 A 2 LYS A 18 ? MSE A 27 ? LYS A 42 MSE A 51 A 3 LEU A 35 ? ASP A 46 ? LEU A 59 ASP A 70 A 4 LYS A 51 ? ASN A 60 ? LYS A 75 ASN A 84 A 5 THR A 65 ? TYR A 77 ? THR A 89 TYR A 101 A 6 GLU A 80 ? TRP A 88 ? GLU A 104 TRP A 112 A 7 PHE A 95 ? THR A 105 ? PHE A 119 THR A 129 A 8 LEU A 111 ? ASN A 120 ? LEU A 135 ASN A 144 A 9 GLN A 125 ? LEU A 133 ? GLN A 149 LEU A 157 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 9 ? N ILE A 33 O TYR A 25 ? O TYR A 49 A 2 3 N ILE A 24 ? N ILE A 48 O LYS A 39 ? O LYS A 63 A 3 4 N SER A 44 ? N SER A 68 O VAL A 53 ? O VAL A 77 A 4 5 N THR A 52 ? N THR A 76 O ILE A 74 ? O ILE A 98 A 5 6 N TYR A 77 ? N TYR A 101 O GLU A 80 ? O GLU A 104 A 6 7 N TYR A 85 ? N TYR A 109 O LYS A 99 ? O LYS A 123 A 7 8 N ILE A 104 ? N ILE A 128 O ILE A 112 ? O ILE A 136 A 8 9 N ALA A 116 ? N ALA A 140 O GLU A 129 ? O GLU A 153 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 1 ? 2 'BINDING SITE FOR RESIDUE CL A 1' AC2 Software A CL 2 ? 1 'BINDING SITE FOR RESIDUE CL A 2' AC3 Software A CL 3 ? 1 'BINDING SITE FOR RESIDUE CL A 3' AC4 Software A PGR 4 ? 5 'BINDING SITE FOR RESIDUE PGR A 4' AC5 Software A PGR 5 ? 6 'BINDING SITE FOR RESIDUE PGR A 5' AC6 Software A PGR 6 ? 5 'BINDING SITE FOR RESIDUE PGR A 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 MSE A 14 ? MSE A 38 . ? 1_555 ? 2 AC1 2 HOH H . ? HOH A 222 . ? 1_555 ? 3 AC2 1 HIS A 10 ? HIS A 34 . ? 1_555 ? 4 AC3 1 ARG A 76 ? ARG A 100 . ? 1_555 ? 5 AC4 5 HOH H . ? HOH A 15 . ? 2_554 ? 6 AC4 5 SER A 44 ? SER A 68 . ? 2_554 ? 7 AC4 5 ALA A 132 ? ALA A 156 . ? 1_555 ? 8 AC4 5 LEU A 133 ? LEU A 157 . ? 1_555 ? 9 AC4 5 GLU A 138 ? GLU A 162 . ? 1_555 ? 10 AC5 6 HOH H . ? HOH A 15 . ? 2_554 ? 11 AC5 6 VAL A 20 ? VAL A 44 . ? 2_554 ? 12 AC5 6 LYS A 42 ? LYS A 66 . ? 2_554 ? 13 AC5 6 TYR A 43 ? TYR A 67 . ? 2_554 ? 14 AC5 6 TYR A 115 ? TYR A 139 . ? 1_555 ? 15 AC5 6 ASP A 131 ? ASP A 155 . ? 1_555 ? 16 AC6 5 GLY A 5 ? GLY A 29 . ? 4_555 ? 17 AC6 5 LYS A 6 ? LYS A 30 . ? 4_555 ? 18 AC6 5 LEU A 19 ? LEU A 43 . ? 1_555 ? 19 AC6 5 TYR A 45 ? TYR A 69 . ? 1_555 ? 20 AC6 5 HOH H . ? HOH A 182 . ? 4_555 ? # _atom_sites.entry_id 3MSW _atom_sites.fract_transf_matrix[1][1] 0.021944 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017376 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015378 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 THR 2 26 26 THR THR A . n A 1 3 ASN 3 27 27 ASN ASN A . n A 1 4 ASN 4 28 28 ASN ASN A . n A 1 5 GLY 5 29 29 GLY GLY A . n A 1 6 LYS 6 30 30 LYS LYS A . n A 1 7 GLN 7 31 31 GLN GLN A . n A 1 8 PHE 8 32 32 PHE PHE A . n A 1 9 ILE 9 33 33 ILE ILE A . n A 1 10 HIS 10 34 34 HIS HIS A . n A 1 11 ASN 11 35 35 ASN ASN A . n A 1 12 ASP 12 36 36 ASP ASP A . n A 1 13 THR 13 37 37 THR THR A . n A 1 14 MSE 14 38 38 MSE MSE A . n A 1 15 GLU 15 39 39 GLU GLU A . n A 1 16 GLY 16 40 40 GLY GLY A . n A 1 17 GLY 17 41 41 GLY GLY A . n A 1 18 LYS 18 42 42 LYS LYS A . n A 1 19 LEU 19 43 43 LEU LEU A . n A 1 20 VAL 20 44 44 VAL VAL A . n A 1 21 CYS 21 45 45 CYS CYS A . n A 1 22 ARG 22 46 46 ARG ARG A . n A 1 23 GLU 23 47 47 GLU GLU A . n A 1 24 ILE 24 48 48 ILE ILE A . n A 1 25 TYR 25 49 49 TYR TYR A . n A 1 26 ALA 26 50 50 ALA ALA A . n A 1 27 MSE 27 51 51 MSE MSE A . n A 1 28 ASN 28 52 52 ASN ASN A . n A 1 29 ASP 29 53 53 ASP ASP A . n A 1 30 ALA 30 54 54 ALA ALA A . n A 1 31 ALA 31 55 55 ALA ALA A . n A 1 32 SER 32 56 56 SER SER A . n A 1 33 GLY 33 57 57 GLY GLY A . n A 1 34 ILE 34 58 58 ILE ILE A . n A 1 35 LEU 35 59 59 LEU LEU A . n A 1 36 ASN 36 60 60 ASN ASN A . n A 1 37 PRO 37 61 61 PRO PRO A . n A 1 38 VAL 38 62 62 VAL VAL A . n A 1 39 LYS 39 63 63 LYS LYS A . n A 1 40 MSE 40 64 64 MSE MSE A . n A 1 41 TYR 41 65 65 TYR TYR A . n A 1 42 LYS 42 66 66 LYS LYS A . n A 1 43 TYR 43 67 67 TYR TYR A . n A 1 44 SER 44 68 68 SER SER A . n A 1 45 TYR 45 69 69 TYR TYR A . n A 1 46 ASP 46 70 70 ASP ASP A . n A 1 47 THR 47 71 71 THR THR A . n A 1 48 ASP 48 72 72 ASP ASP A . n A 1 49 GLN 49 73 73 GLN GLN A . n A 1 50 GLN 50 74 74 GLN GLN A . n A 1 51 LYS 51 75 75 LYS LYS A . n A 1 52 THR 52 76 76 THR THR A . n A 1 53 VAL 53 77 77 VAL VAL A . n A 1 54 LYS 54 78 78 LYS LYS A . n A 1 55 SER 55 79 79 SER SER A . n A 1 56 THR 56 80 80 THR THR A . n A 1 57 TYR 57 81 81 TYR TYR A . n A 1 58 ALA 58 82 82 ALA ALA A . n A 1 59 TRP 59 83 83 TRP TRP A . n A 1 60 ASN 60 84 84 ASN ASN A . n A 1 61 ILE 61 85 85 ILE ILE A . n A 1 62 PHE 62 86 86 PHE PHE A . n A 1 63 LYS 63 87 87 LYS LYS A . n A 1 64 ASN 64 88 88 ASN ASN A . n A 1 65 THR 65 89 89 THR THR A . n A 1 66 TRP 66 90 90 TRP TRP A . n A 1 67 GLU 67 91 91 GLU GLU A . n A 1 68 THR 68 92 92 THR THR A . n A 1 69 GLU 69 93 93 GLU GLU A . n A 1 70 SER 70 94 94 SER SER A . n A 1 71 ARG 71 95 95 ARG ARG A . n A 1 72 THR 72 96 96 THR THR A . n A 1 73 VAL 73 97 97 VAL VAL A . n A 1 74 ILE 74 98 98 ILE ILE A . n A 1 75 SER 75 99 99 SER SER A . n A 1 76 ARG 76 100 100 ARG ARG A . n A 1 77 TYR 77 101 101 TYR TYR A . n A 1 78 GLU 78 102 102 GLU GLU A . n A 1 79 THR 79 103 103 THR THR A . n A 1 80 GLU 80 104 104 GLU GLU A . n A 1 81 THR 81 105 105 THR THR A . n A 1 82 SER 82 106 106 SER SER A . n A 1 83 VAL 83 107 107 VAL VAL A . n A 1 84 GLU 84 108 108 GLU GLU A . n A 1 85 TYR 85 109 109 TYR TYR A . n A 1 86 SER 86 110 110 SER SER A . n A 1 87 VAL 87 111 111 VAL VAL A . n A 1 88 TRP 88 112 112 TRP TRP A . n A 1 89 ASN 89 113 113 ASN ASN A . n A 1 90 LYS 90 114 114 LYS LYS A . n A 1 91 GLU 91 115 115 GLU GLU A . n A 1 92 LYS 92 116 116 LYS LYS A . n A 1 93 GLY 93 117 117 GLY GLY A . n A 1 94 SER 94 118 118 SER SER A . n A 1 95 PHE 95 119 119 PHE PHE A . n A 1 96 ASP 96 120 120 ASP ASP A . n A 1 97 LEU 97 121 121 LEU LEU A . n A 1 98 SER 98 122 122 SER SER A . n A 1 99 LYS 99 123 123 LYS LYS A . n A 1 100 LYS 100 124 124 LYS LYS A . n A 1 101 TYR 101 125 125 TYR TYR A . n A 1 102 ILE 102 126 126 ILE ILE A . n A 1 103 TYR 103 127 127 TYR TYR A . n A 1 104 ILE 104 128 128 ILE ILE A . n A 1 105 THR 105 129 129 THR THR A . n A 1 106 ASP 106 130 130 ASP ASP A . n A 1 107 ASN 107 131 131 ASN ASN A . n A 1 108 ASN 108 132 132 ASN ASN A . n A 1 109 ASN 109 133 133 ASN ASN A . n A 1 110 GLN 110 134 134 GLN GLN A . n A 1 111 LEU 111 135 135 LEU LEU A . n A 1 112 ILE 112 136 136 ILE ILE A . n A 1 113 ALA 113 137 137 ALA ALA A . n A 1 114 GLN 114 138 138 GLN GLN A . n A 1 115 TYR 115 139 139 TYR TYR A . n A 1 116 ALA 116 140 140 ALA ALA A . n A 1 117 TYR 117 141 141 TYR TYR A . n A 1 118 LYS 118 142 142 LYS LYS A . n A 1 119 MSE 119 143 143 MSE MSE A . n A 1 120 ASN 120 144 144 ASN ASN A . n A 1 121 SER 121 145 145 SER SER A . n A 1 122 ARG 122 146 146 ARG ARG A . n A 1 123 THR 123 147 147 THR THR A . n A 1 124 ASN 124 148 148 ASN ASN A . n A 1 125 GLN 125 149 149 GLN GLN A . n A 1 126 TRP 126 150 150 TRP TRP A . n A 1 127 ILE 127 151 151 ILE ILE A . n A 1 128 LEU 128 152 152 LEU LEU A . n A 1 129 GLU 129 153 153 GLU GLU A . n A 1 130 LYS 130 154 154 LYS LYS A . n A 1 131 ASP 131 155 155 ASP ASP A . n A 1 132 ALA 132 156 156 ALA ALA A . n A 1 133 LEU 133 157 157 LEU LEU A . n A 1 134 THR 134 158 158 THR THR A . n A 1 135 PRO 135 159 159 PRO PRO A . n A 1 136 ILE 136 160 160 ILE ILE A . n A 1 137 TYR 137 161 161 TYR TYR A . n A 1 138 GLU 138 162 162 GLU GLU A . n A 1 139 ASN 139 163 163 ASN ASN A . n A 1 140 ILE 140 164 ? ? ? A . n A 1 141 TYR 141 165 ? ? ? A . n A 1 142 ALA 142 166 ? ? ? A . n A 1 143 THR 143 167 ? ? ? A . n A 1 144 THR 144 168 ? ? ? A . n A 1 145 ARG 145 169 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1 1 CL CL A . C 2 CL 1 2 2 CL CL A . D 2 CL 1 3 3 CL CL A . E 3 PGR 1 4 4 PGR PGR A . F 3 PGR 1 5 5 PGR PGR A . G 3 PGR 1 6 6 PGR PGR A . H 4 HOH 1 7 7 HOH HOH A . H 4 HOH 2 8 8 HOH HOH A . H 4 HOH 3 9 9 HOH HOH A . H 4 HOH 4 10 10 HOH HOH A . H 4 HOH 5 11 11 HOH HOH A . H 4 HOH 6 12 12 HOH HOH A . H 4 HOH 7 13 13 HOH HOH A . H 4 HOH 8 14 14 HOH HOH A . H 4 HOH 9 15 15 HOH HOH A . H 4 HOH 10 16 16 HOH HOH A . H 4 HOH 11 17 17 HOH HOH A . H 4 HOH 12 18 18 HOH HOH A . H 4 HOH 13 19 19 HOH HOH A . H 4 HOH 14 20 20 HOH HOH A . H 4 HOH 15 21 21 HOH HOH A . H 4 HOH 16 22 22 HOH HOH A . H 4 HOH 17 23 23 HOH HOH A . H 4 HOH 18 24 24 HOH HOH A . H 4 HOH 19 25 25 HOH HOH A . H 4 HOH 20 170 26 HOH HOH A . H 4 HOH 21 171 27 HOH HOH A . H 4 HOH 22 172 28 HOH HOH A . H 4 HOH 23 173 29 HOH HOH A . H 4 HOH 24 174 30 HOH HOH A . H 4 HOH 25 175 31 HOH HOH A . H 4 HOH 26 176 32 HOH HOH A . H 4 HOH 27 177 33 HOH HOH A . H 4 HOH 28 178 34 HOH HOH A . H 4 HOH 29 179 35 HOH HOH A . H 4 HOH 30 180 36 HOH HOH A . H 4 HOH 31 181 37 HOH HOH A . H 4 HOH 32 182 38 HOH HOH A . H 4 HOH 33 183 39 HOH HOH A . H 4 HOH 34 184 40 HOH HOH A . H 4 HOH 35 185 41 HOH HOH A . H 4 HOH 36 186 42 HOH HOH A . H 4 HOH 37 187 43 HOH HOH A . H 4 HOH 38 188 44 HOH HOH A . H 4 HOH 39 189 45 HOH HOH A . H 4 HOH 40 190 46 HOH HOH A . H 4 HOH 41 191 47 HOH HOH A . H 4 HOH 42 192 48 HOH HOH A . H 4 HOH 43 193 49 HOH HOH A . H 4 HOH 44 194 50 HOH HOH A . H 4 HOH 45 195 51 HOH HOH A . H 4 HOH 46 196 52 HOH HOH A . H 4 HOH 47 197 53 HOH HOH A . H 4 HOH 48 198 54 HOH HOH A . H 4 HOH 49 199 55 HOH HOH A . H 4 HOH 50 200 56 HOH HOH A . H 4 HOH 51 201 57 HOH HOH A . H 4 HOH 52 202 58 HOH HOH A . H 4 HOH 53 203 59 HOH HOH A . H 4 HOH 54 204 60 HOH HOH A . H 4 HOH 55 205 61 HOH HOH A . H 4 HOH 56 206 62 HOH HOH A . H 4 HOH 57 207 63 HOH HOH A . H 4 HOH 58 208 64 HOH HOH A . H 4 HOH 59 209 65 HOH HOH A . H 4 HOH 60 210 66 HOH HOH A . H 4 HOH 61 211 67 HOH HOH A . H 4 HOH 62 212 68 HOH HOH A . H 4 HOH 63 213 69 HOH HOH A . H 4 HOH 64 214 70 HOH HOH A . H 4 HOH 65 215 71 HOH HOH A . H 4 HOH 66 216 72 HOH HOH A . H 4 HOH 67 217 73 HOH HOH A . H 4 HOH 68 218 74 HOH HOH A . H 4 HOH 69 219 75 HOH HOH A . H 4 HOH 70 220 76 HOH HOH A . H 4 HOH 71 221 77 HOH HOH A . H 4 HOH 72 222 78 HOH HOH A . H 4 HOH 73 223 79 HOH HOH A . H 4 HOH 74 224 80 HOH HOH A . H 4 HOH 75 225 81 HOH HOH A . H 4 HOH 76 226 82 HOH HOH A . H 4 HOH 77 227 83 HOH HOH A . H 4 HOH 78 228 84 HOH HOH A . H 4 HOH 79 229 85 HOH HOH A . H 4 HOH 80 230 86 HOH HOH A . H 4 HOH 81 231 87 HOH HOH A . H 4 HOH 82 232 88 HOH HOH A . H 4 HOH 83 233 89 HOH HOH A . H 4 HOH 84 234 90 HOH HOH A . H 4 HOH 85 235 91 HOH HOH A . H 4 HOH 86 236 92 HOH HOH A . H 4 HOH 87 237 93 HOH HOH A . H 4 HOH 88 238 94 HOH HOH A . H 4 HOH 89 239 95 HOH HOH A . H 4 HOH 90 240 96 HOH HOH A . H 4 HOH 91 241 97 HOH HOH A . H 4 HOH 92 242 98 HOH HOH A . H 4 HOH 93 243 99 HOH HOH A . H 4 HOH 94 244 100 HOH HOH A . H 4 HOH 95 245 101 HOH HOH A . H 4 HOH 96 246 102 HOH HOH A . H 4 HOH 97 247 103 HOH HOH A . H 4 HOH 98 248 104 HOH HOH A . H 4 HOH 99 249 105 HOH HOH A . H 4 HOH 100 250 106 HOH HOH A . H 4 HOH 101 251 107 HOH HOH A . H 4 HOH 102 252 108 HOH HOH A . H 4 HOH 103 253 109 HOH HOH A . H 4 HOH 104 254 110 HOH HOH A . H 4 HOH 105 255 111 HOH HOH A . H 4 HOH 106 256 112 HOH HOH A . H 4 HOH 107 257 113 HOH HOH A . H 4 HOH 108 258 114 HOH HOH A . H 4 HOH 109 259 115 HOH HOH A . H 4 HOH 110 260 116 HOH HOH A . H 4 HOH 111 261 117 HOH HOH A . H 4 HOH 112 262 118 HOH HOH A . H 4 HOH 113 263 119 HOH HOH A . H 4 HOH 114 264 120 HOH HOH A . H 4 HOH 115 265 121 HOH HOH A . H 4 HOH 116 266 122 HOH HOH A . H 4 HOH 117 267 123 HOH HOH A . H 4 HOH 118 268 124 HOH HOH A . H 4 HOH 119 269 125 HOH HOH A . H 4 HOH 120 270 126 HOH HOH A . H 4 HOH 121 271 127 HOH HOH A . H 4 HOH 122 272 128 HOH HOH A . H 4 HOH 123 273 129 HOH HOH A . H 4 HOH 124 274 130 HOH HOH A . H 4 HOH 125 275 131 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 38 ? MET SELENOMETHIONINE 2 A MSE 27 A MSE 51 ? MET SELENOMETHIONINE 3 A MSE 40 A MSE 64 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 143 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2020-04-22 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' citation 4 4 'Structure model' citation_author 5 4 'Structure model' struct_conn 6 5 'Structure model' database_2 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.country' 2 4 'Structure model' '_citation.journal_abbrev' 3 4 'Structure model' '_citation.journal_id_ASTM' 4 4 'Structure model' '_citation.journal_id_CSD' 5 4 'Structure model' '_citation.journal_id_ISSN' 6 4 'Structure model' '_citation.journal_volume' 7 4 'Structure model' '_citation.page_first' 8 4 'Structure model' '_citation.page_last' 9 4 'Structure model' '_citation.pdbx_database_id_DOI' 10 4 'Structure model' '_citation.pdbx_database_id_PubMed' 11 4 'Structure model' '_citation.title' 12 4 'Structure model' '_citation.year' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_database_2.pdbx_DOI' 15 5 'Structure model' '_database_2.pdbx_database_accession' 16 5 'Structure model' '_struct_ref_seq_dif.details' 17 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 3.8887 _pdbx_refine_tls.origin_y 3.1692 _pdbx_refine_tls.origin_z 0.3572 _pdbx_refine_tls.T[1][1] -0.1419 _pdbx_refine_tls.T[2][2] 0.1151 _pdbx_refine_tls.T[3][3] -0.1257 _pdbx_refine_tls.T[1][2] -0.0135 _pdbx_refine_tls.T[1][3] -0.0235 _pdbx_refine_tls.T[2][3] -0.0004 _pdbx_refine_tls.L[1][1] 1.2116 _pdbx_refine_tls.L[2][2] 1.2949 _pdbx_refine_tls.L[3][3] 1.4692 _pdbx_refine_tls.L[1][2] -0.2725 _pdbx_refine_tls.L[1][3] -0.8711 _pdbx_refine_tls.L[2][3] 0.2617 _pdbx_refine_tls.S[1][1] -0.1818 _pdbx_refine_tls.S[1][2] 0.0674 _pdbx_refine_tls.S[1][3] -0.0997 _pdbx_refine_tls.S[2][1] -0.0168 _pdbx_refine_tls.S[2][2] 0.0705 _pdbx_refine_tls.S[2][3] 0.0841 _pdbx_refine_tls.S[3][1] 0.0814 _pdbx_refine_tls.S[3][2] -0.1493 _pdbx_refine_tls.S[3][3] 0.1113 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 275 _pdbx_refine_tls_group.selection_details '{ A|* }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? 9 # _pdbx_entry_details.entry_id 3MSW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 26-269) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 102 ? ? 67.13 -93.15 2 1 GLU A 115 ? ? -84.19 30.40 3 1 LYS A 116 ? ? -148.35 -24.65 4 1 SER A 122 ? ? -120.85 -53.67 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 26 ? OG1 ? A THR 2 OG1 2 1 Y 1 A THR 26 ? CG2 ? A THR 2 CG2 3 1 Y 1 A LYS 114 ? CG ? A LYS 90 CG 4 1 Y 1 A LYS 114 ? CD ? A LYS 90 CD 5 1 Y 1 A LYS 114 ? CE ? A LYS 90 CE 6 1 Y 1 A LYS 114 ? NZ ? A LYS 90 NZ 7 1 Y 1 A ARG 146 ? CG ? A ARG 122 CG 8 1 Y 1 A ARG 146 ? CD ? A ARG 122 CD 9 1 Y 1 A ARG 146 ? NE ? A ARG 122 NE 10 1 Y 1 A ARG 146 ? CZ ? A ARG 122 CZ 11 1 Y 1 A ARG 146 ? NH1 ? A ARG 122 NH1 12 1 Y 1 A ARG 146 ? NH2 ? A ARG 122 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 164 ? A ILE 140 2 1 Y 1 A TYR 165 ? A TYR 141 3 1 Y 1 A ALA 166 ? A ALA 142 4 1 Y 1 A THR 167 ? A THR 143 5 1 Y 1 A THR 168 ? A THR 144 6 1 Y 1 A ARG 169 ? A ARG 145 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 R-1,2-PROPANEDIOL PGR 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #