data_3MUF # _entry.id 3MUF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MUF pdb_00003muf 10.2210/pdb3muf/pdb RCSB RCSB059006 ? ? WWPDB D_1000059006 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1ZUH 'The same protein' unspecified PDB 1ZUI 'The same protein complexed with shikimate' unspecified PDB 3HR7 'dimeric type' unspecified PDB 3MRS 'Site-directed mutagenesis of R57 residue' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MUF _pdbx_database_status.recvd_initial_deposition_date 2010-05-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cheng, W.C.' 1 'Chen, T.J.' 2 'Lin, S.C.' 3 'Wang, W.C.' 4 # _citation.id primary _citation.title 'Structures of Helicobacter pylori shikimate kinase reveal a selective inhibitor-induced-fit mechanism' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e33481 _citation.page_last e33481 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22438938 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0033481 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cheng, W.C.' 1 ? primary 'Chen, Y.F.' 2 ? primary 'Wang, H.J.' 3 ? primary 'Hsu, K.C.' 4 ? primary 'Lin, S.C.' 5 ? primary 'Chen, T.J.' 6 ? primary 'Yang, J.M.' 7 ? primary 'Wang, W.C.' 8 ? # _cell.entry_id 3MUF _cell.length_a 98.816 _cell.length_b 98.816 _cell.length_c 42.129 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MUF _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Shikimate kinase' 19265.336 1 2.7.1.71 ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn SHIKIMATE-3-PHOSPHATE 254.131 1 ? ? ? ? 4 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name SK # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPH VISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSL KQVLQFIA ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPH VISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSL KQVLQFIA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MET n 1 8 GLN n 1 9 HIS n 1 10 LEU n 1 11 VAL n 1 12 LEU n 1 13 ILE n 1 14 GLY n 1 15 PHE n 1 16 MET n 1 17 GLY n 1 18 SER n 1 19 GLY n 1 20 LYS n 1 21 SER n 1 22 SER n 1 23 LEU n 1 24 ALA n 1 25 GLN n 1 26 GLU n 1 27 LEU n 1 28 GLY n 1 29 LEU n 1 30 ALA n 1 31 LEU n 1 32 LYS n 1 33 LEU n 1 34 GLU n 1 35 VAL n 1 36 LEU n 1 37 ASP n 1 38 THR n 1 39 ASP n 1 40 MET n 1 41 ILE n 1 42 ILE n 1 43 SER n 1 44 GLU n 1 45 ARG n 1 46 VAL n 1 47 GLY n 1 48 LEU n 1 49 SER n 1 50 VAL n 1 51 ARG n 1 52 GLU n 1 53 ILE n 1 54 PHE n 1 55 GLU n 1 56 GLU n 1 57 LEU n 1 58 GLY n 1 59 GLU n 1 60 ASP n 1 61 ASN n 1 62 PHE n 1 63 ARG n 1 64 MET n 1 65 PHE n 1 66 GLU n 1 67 LYS n 1 68 ASN n 1 69 LEU n 1 70 ILE n 1 71 ASP n 1 72 GLU n 1 73 LEU n 1 74 LYS n 1 75 THR n 1 76 LEU n 1 77 LYS n 1 78 THR n 1 79 PRO n 1 80 HIS n 1 81 VAL n 1 82 ILE n 1 83 SER n 1 84 THR n 1 85 GLY n 1 86 GLY n 1 87 GLY n 1 88 ILE n 1 89 VAL n 1 90 MET n 1 91 HIS n 1 92 GLU n 1 93 ASN n 1 94 LEU n 1 95 LYS n 1 96 GLY n 1 97 LEU n 1 98 GLY n 1 99 THR n 1 100 THR n 1 101 PHE n 1 102 TYR n 1 103 LEU n 1 104 LYS n 1 105 MET n 1 106 ASP n 1 107 PHE n 1 108 GLU n 1 109 THR n 1 110 LEU n 1 111 ILE n 1 112 LYS n 1 113 ARG n 1 114 LEU n 1 115 ASN n 1 116 GLN n 1 117 LYS n 1 118 GLU n 1 119 ARG n 1 120 GLU n 1 121 LYS n 1 122 ARG n 1 123 PRO n 1 124 LEU n 1 125 LEU n 1 126 ASN n 1 127 ASN n 1 128 LEU n 1 129 THR n 1 130 GLN n 1 131 ALA n 1 132 LYS n 1 133 GLU n 1 134 LEU n 1 135 PHE n 1 136 GLU n 1 137 LYS n 1 138 ARG n 1 139 GLN n 1 140 ALA n 1 141 LEU n 1 142 TYR n 1 143 GLU n 1 144 LYS n 1 145 ASN n 1 146 ALA n 1 147 SER n 1 148 PHE n 1 149 ILE n 1 150 ILE n 1 151 ASP n 1 152 ALA n 1 153 ARG n 1 154 GLY n 1 155 GLY n 1 156 LEU n 1 157 ASN n 1 158 ASN n 1 159 SER n 1 160 LEU n 1 161 LYS n 1 162 GLN n 1 163 VAL n 1 164 LEU n 1 165 GLN n 1 166 PHE n 1 167 ILE n 1 168 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AROK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 26695 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 210 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 85962 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AROK_HELPY _struct_ref.pdbx_db_accession P56073 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG GIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQF IA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MUF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 168 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P56073 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MUF HIS A 1 ? UNP P56073 ? ? 'expression tag' -5 1 1 3MUF HIS A 2 ? UNP P56073 ? ? 'expression tag' -4 2 1 3MUF HIS A 3 ? UNP P56073 ? ? 'expression tag' -3 3 1 3MUF HIS A 4 ? UNP P56073 ? ? 'expression tag' -2 4 1 3MUF HIS A 5 ? UNP P56073 ? ? 'expression tag' -1 5 1 3MUF HIS A 6 ? UNP P56073 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 S3P non-polymer . SHIKIMATE-3-PHOSPHATE ? 'C7 H11 O8 P' 254.131 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MUF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.22 _exptl_crystal.density_percent_sol 61.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '18% PEG 8000, 0.1M sodium acetate, 0.1M HEPES, 2% isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 193 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-04-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97622 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13C1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13C1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97622 # _reflns.entry_id 3MUF _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.30 _reflns.number_obs 10585 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI 29.28 _reflns.B_iso_Wilson_estimate 36 _reflns.pdbx_redundancy 11.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.488 _reflns_shell.pdbx_Rsym_value 0.488 _reflns_shell.meanI_over_sigI_obs 2.47 _reflns_shell.pdbx_redundancy 10.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2011 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3MUF _refine.ls_number_reflns_obs 10003 _refine.ls_number_reflns_all 10003 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.62 _refine.ls_R_factor_obs 0.23350 _refine.ls_R_factor_all 0.23350 _refine.ls_R_factor_R_work 0.23126 _refine.ls_R_factor_R_free 0.27694 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 537 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.B_iso_mean 56.190 _refine.aniso_B[1][1] -6.00 _refine.aniso_B[2][2] -6.00 _refine.aniso_B[3][3] 9.00 _refine.aniso_B[1][2] -3.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1ZUI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.242 _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1279 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 1381 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1339 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.780 2.031 ? 1800 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.372 5.000 ? 159 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.603 25.000 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.488 15.000 ? 267 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.003 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 209 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 951 'X-RAY DIFFRACTION' ? r_mcbond_it 0.923 1.500 ? 788 'X-RAY DIFFRACTION' ? r_mcangle_it 1.757 2.000 ? 1264 'X-RAY DIFFRACTION' ? r_scbond_it 2.649 3.000 ? 551 'X-RAY DIFFRACTION' ? r_scangle_it 4.299 4.500 ? 536 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.304 _refine_ls_shell.d_res_low 2.363 _refine_ls_shell.number_reflns_R_work 727 _refine_ls_shell.R_factor_R_work 0.409 _refine_ls_shell.percent_reflns_obs 99.09 _refine_ls_shell.R_factor_R_free 0.486 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MUF _struct.title 'Shikimate kinase from Helicobacter pylori in complex with shikimate-3-phosphate and ADP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MUF _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'helix-sheet complex, Transferase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 19 ? LEU A 31 ? GLY A 13 LEU A 25 1 ? 13 HELX_P HELX_P2 2 THR A 38 ? GLY A 47 ? THR A 32 GLY A 41 1 ? 10 HELX_P HELX_P3 3 SER A 49 ? GLY A 58 ? SER A 43 GLY A 52 1 ? 10 HELX_P HELX_P4 4 GLY A 58 ? LYS A 74 ? GLY A 52 LYS A 68 1 ? 17 HELX_P HELX_P5 5 GLY A 87 ? LYS A 95 ? GLY A 81 LYS A 89 5 ? 9 HELX_P HELX_P6 6 ASP A 106 ? ARG A 113 ? ASP A 100 ARG A 107 1 ? 8 HELX_P HELX_P7 7 ASN A 115 ? LYS A 121 ? ASN A 109 LYS A 115 1 ? 7 HELX_P HELX_P8 8 ARG A 122 ? ASN A 126 ? ARG A 116 ASN A 120 5 ? 5 HELX_P HELX_P9 9 ASN A 127 ? ALA A 146 ? ASN A 121 ALA A 140 1 ? 20 HELX_P HELX_P10 10 GLY A 155 ? PHE A 166 ? GLY A 149 PHE A 160 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 35 ? ASP A 37 ? VAL A 29 ASP A 31 A 2 VAL A 81 ? SER A 83 ? VAL A 75 SER A 77 A 3 HIS A 9 ? ILE A 13 ? HIS A 3 ILE A 7 A 4 GLY A 98 ? LYS A 104 ? GLY A 92 LYS A 98 A 5 PHE A 148 ? ASP A 151 ? PHE A 142 ASP A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 36 ? N LEU A 30 O SER A 83 ? O SER A 77 A 2 3 O ILE A 82 ? O ILE A 76 N LEU A 10 ? N LEU A 4 A 3 4 N ILE A 13 ? N ILE A 7 O LEU A 103 ? O LEU A 97 A 4 5 N TYR A 102 ? N TYR A 96 O ILE A 150 ? O ILE A 144 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 202 ? 14 'BINDING SITE FOR RESIDUE ADP A 202' AC2 Software A S3P 201 ? 17 'BINDING SITE FOR RESIDUE S3P A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 GLY A 17 ? GLY A 11 . ? 1_555 ? 2 AC1 14 SER A 18 ? SER A 12 . ? 1_555 ? 3 AC1 14 GLY A 19 ? GLY A 13 . ? 1_555 ? 4 AC1 14 LYS A 20 ? LYS A 14 . ? 1_555 ? 5 AC1 14 SER A 21 ? SER A 15 . ? 1_555 ? 6 AC1 14 SER A 22 ? SER A 16 . ? 1_555 ? 7 AC1 14 MET A 105 ? MET A 99 . ? 1_555 ? 8 AC1 14 ARG A 113 ? ARG A 107 . ? 1_555 ? 9 AC1 14 ARG A 122 ? ARG A 116 . ? 1_555 ? 10 AC1 14 ALA A 152 ? ALA A 146 . ? 1_555 ? 11 AC1 14 GLY A 154 ? GLY A 148 . ? 1_555 ? 12 AC1 14 GLY A 155 ? GLY A 149 . ? 1_555 ? 13 AC1 14 LEU A 156 ? LEU A 150 . ? 1_555 ? 14 AC1 14 S3P C . ? S3P A 201 . ? 1_555 ? 15 AC2 17 MET A 16 ? MET A 10 . ? 1_555 ? 16 AC2 17 LYS A 20 ? LYS A 14 . ? 1_555 ? 17 AC2 17 ASP A 39 ? ASP A 33 . ? 1_555 ? 18 AC2 17 VAL A 50 ? VAL A 44 . ? 1_555 ? 19 AC2 17 ARG A 63 ? ARG A 57 . ? 1_555 ? 20 AC2 17 GLY A 85 ? GLY A 79 . ? 1_555 ? 21 AC2 17 GLY A 86 ? GLY A 80 . ? 1_555 ? 22 AC2 17 GLY A 87 ? GLY A 81 . ? 1_555 ? 23 AC2 17 ARG A 122 ? ARG A 116 . ? 1_555 ? 24 AC2 17 PRO A 123 ? PRO A 117 . ? 1_555 ? 25 AC2 17 LEU A 124 ? LEU A 118 . ? 1_555 ? 26 AC2 17 ARG A 138 ? ARG A 132 . ? 1_555 ? 27 AC2 17 HOH D . ? HOH A 166 . ? 1_555 ? 28 AC2 17 HOH D . ? HOH A 171 . ? 1_555 ? 29 AC2 17 HOH D . ? HOH A 172 . ? 1_555 ? 30 AC2 17 ADP B . ? ADP A 202 . ? 1_555 ? 31 AC2 17 HOH D . ? HOH A 220 . ? 1_555 ? # _database_PDB_matrix.entry_id 3MUF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MUF _atom_sites.fract_transf_matrix[1][1] 0.010120 _atom_sites.fract_transf_matrix[1][2] 0.005843 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023737 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 ? ? ? A . n A 1 5 HIS 5 -1 ? ? ? A . n A 1 6 HIS 6 0 ? ? ? A . n A 1 7 MET 7 1 ? ? ? A . n A 1 8 GLN 8 2 2 GLN GLN A . n A 1 9 HIS 9 3 3 HIS HIS A . n A 1 10 LEU 10 4 4 LEU LEU A . n A 1 11 VAL 11 5 5 VAL VAL A . n A 1 12 LEU 12 6 6 LEU LEU A . n A 1 13 ILE 13 7 7 ILE ILE A . n A 1 14 GLY 14 8 8 GLY GLY A . n A 1 15 PHE 15 9 9 PHE PHE A . n A 1 16 MET 16 10 10 MET MET A . n A 1 17 GLY 17 11 11 GLY GLY A . n A 1 18 SER 18 12 12 SER SER A . n A 1 19 GLY 19 13 13 GLY GLY A . n A 1 20 LYS 20 14 14 LYS LYS A . n A 1 21 SER 21 15 15 SER SER A . n A 1 22 SER 22 16 16 SER SER A . n A 1 23 LEU 23 17 17 LEU LEU A . n A 1 24 ALA 24 18 18 ALA ALA A . n A 1 25 GLN 25 19 19 GLN GLN A . n A 1 26 GLU 26 20 20 GLU GLU A . n A 1 27 LEU 27 21 21 LEU LEU A . n A 1 28 GLY 28 22 22 GLY GLY A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 ALA 30 24 24 ALA ALA A . n A 1 31 LEU 31 25 25 LEU LEU A . n A 1 32 LYS 32 26 26 LYS LYS A . n A 1 33 LEU 33 27 27 LEU LEU A . n A 1 34 GLU 34 28 28 GLU GLU A . n A 1 35 VAL 35 29 29 VAL VAL A . n A 1 36 LEU 36 30 30 LEU LEU A . n A 1 37 ASP 37 31 31 ASP ASP A . n A 1 38 THR 38 32 32 THR THR A . n A 1 39 ASP 39 33 33 ASP ASP A . n A 1 40 MET 40 34 34 MET MET A . n A 1 41 ILE 41 35 35 ILE ILE A . n A 1 42 ILE 42 36 36 ILE ILE A . n A 1 43 SER 43 37 37 SER SER A . n A 1 44 GLU 44 38 38 GLU GLU A . n A 1 45 ARG 45 39 39 ARG ARG A . n A 1 46 VAL 46 40 40 VAL VAL A . n A 1 47 GLY 47 41 41 GLY GLY A . n A 1 48 LEU 48 42 42 LEU LEU A . n A 1 49 SER 49 43 43 SER SER A . n A 1 50 VAL 50 44 44 VAL VAL A . n A 1 51 ARG 51 45 45 ARG ARG A . n A 1 52 GLU 52 46 46 GLU GLU A . n A 1 53 ILE 53 47 47 ILE ILE A . n A 1 54 PHE 54 48 48 PHE PHE A . n A 1 55 GLU 55 49 49 GLU GLU A . n A 1 56 GLU 56 50 50 GLU GLU A . n A 1 57 LEU 57 51 51 LEU LEU A . n A 1 58 GLY 58 52 52 GLY GLY A . n A 1 59 GLU 59 53 53 GLU GLU A . n A 1 60 ASP 60 54 54 ASP ASP A . n A 1 61 ASN 61 55 55 ASN ASN A . n A 1 62 PHE 62 56 56 PHE PHE A . n A 1 63 ARG 63 57 57 ARG ARG A . n A 1 64 MET 64 58 58 MET MET A . n A 1 65 PHE 65 59 59 PHE PHE A . n A 1 66 GLU 66 60 60 GLU GLU A . n A 1 67 LYS 67 61 61 LYS LYS A . n A 1 68 ASN 68 62 62 ASN ASN A . n A 1 69 LEU 69 63 63 LEU LEU A . n A 1 70 ILE 70 64 64 ILE ILE A . n A 1 71 ASP 71 65 65 ASP ASP A . n A 1 72 GLU 72 66 66 GLU GLU A . n A 1 73 LEU 73 67 67 LEU LEU A . n A 1 74 LYS 74 68 68 LYS LYS A . n A 1 75 THR 75 69 69 THR THR A . n A 1 76 LEU 76 70 70 LEU LEU A . n A 1 77 LYS 77 71 71 LYS LYS A . n A 1 78 THR 78 72 72 THR THR A . n A 1 79 PRO 79 73 73 PRO PRO A . n A 1 80 HIS 80 74 74 HIS HIS A . n A 1 81 VAL 81 75 75 VAL VAL A . n A 1 82 ILE 82 76 76 ILE ILE A . n A 1 83 SER 83 77 77 SER SER A . n A 1 84 THR 84 78 78 THR THR A . n A 1 85 GLY 85 79 79 GLY GLY A . n A 1 86 GLY 86 80 80 GLY GLY A . n A 1 87 GLY 87 81 81 GLY GLY A . n A 1 88 ILE 88 82 82 ILE ILE A . n A 1 89 VAL 89 83 83 VAL VAL A . n A 1 90 MET 90 84 84 MET MET A . n A 1 91 HIS 91 85 85 HIS HIS A . n A 1 92 GLU 92 86 86 GLU GLU A . n A 1 93 ASN 93 87 87 ASN ASN A . n A 1 94 LEU 94 88 88 LEU LEU A . n A 1 95 LYS 95 89 89 LYS LYS A . n A 1 96 GLY 96 90 90 GLY GLY A . n A 1 97 LEU 97 91 91 LEU LEU A . n A 1 98 GLY 98 92 92 GLY GLY A . n A 1 99 THR 99 93 93 THR THR A . n A 1 100 THR 100 94 94 THR THR A . n A 1 101 PHE 101 95 95 PHE PHE A . n A 1 102 TYR 102 96 96 TYR TYR A . n A 1 103 LEU 103 97 97 LEU LEU A . n A 1 104 LYS 104 98 98 LYS LYS A . n A 1 105 MET 105 99 99 MET MET A . n A 1 106 ASP 106 100 100 ASP ASP A . n A 1 107 PHE 107 101 101 PHE PHE A . n A 1 108 GLU 108 102 102 GLU GLU A . n A 1 109 THR 109 103 103 THR THR A . n A 1 110 LEU 110 104 104 LEU LEU A . n A 1 111 ILE 111 105 105 ILE ILE A . n A 1 112 LYS 112 106 106 LYS LYS A . n A 1 113 ARG 113 107 107 ARG ARG A . n A 1 114 LEU 114 108 108 LEU LEU A . n A 1 115 ASN 115 109 109 ASN ASN A . n A 1 116 GLN 116 110 110 GLN GLN A . n A 1 117 LYS 117 111 111 LYS LYS A . n A 1 118 GLU 118 112 112 GLU GLU A . n A 1 119 ARG 119 113 113 ARG ARG A . n A 1 120 GLU 120 114 114 GLU GLU A . n A 1 121 LYS 121 115 115 LYS LYS A . n A 1 122 ARG 122 116 116 ARG ARG A . n A 1 123 PRO 123 117 117 PRO PRO A . n A 1 124 LEU 124 118 118 LEU LEU A . n A 1 125 LEU 125 119 119 LEU LEU A . n A 1 126 ASN 126 120 120 ASN ASN A . n A 1 127 ASN 127 121 121 ASN ASN A . n A 1 128 LEU 128 122 122 LEU LEU A . n A 1 129 THR 129 123 123 THR THR A . n A 1 130 GLN 130 124 124 GLN GLN A . n A 1 131 ALA 131 125 125 ALA ALA A . n A 1 132 LYS 132 126 126 LYS LYS A . n A 1 133 GLU 133 127 127 GLU GLU A . n A 1 134 LEU 134 128 128 LEU LEU A . n A 1 135 PHE 135 129 129 PHE PHE A . n A 1 136 GLU 136 130 130 GLU GLU A . n A 1 137 LYS 137 131 131 LYS LYS A . n A 1 138 ARG 138 132 132 ARG ARG A . n A 1 139 GLN 139 133 133 GLN GLN A . n A 1 140 ALA 140 134 134 ALA ALA A . n A 1 141 LEU 141 135 135 LEU LEU A . n A 1 142 TYR 142 136 136 TYR TYR A . n A 1 143 GLU 143 137 137 GLU GLU A . n A 1 144 LYS 144 138 138 LYS LYS A . n A 1 145 ASN 145 139 139 ASN ASN A . n A 1 146 ALA 146 140 140 ALA ALA A . n A 1 147 SER 147 141 141 SER SER A . n A 1 148 PHE 148 142 142 PHE PHE A . n A 1 149 ILE 149 143 143 ILE ILE A . n A 1 150 ILE 150 144 144 ILE ILE A . n A 1 151 ASP 151 145 145 ASP ASP A . n A 1 152 ALA 152 146 146 ALA ALA A . n A 1 153 ARG 153 147 147 ARG ARG A . n A 1 154 GLY 154 148 148 GLY GLY A . n A 1 155 GLY 155 149 149 GLY GLY A . n A 1 156 LEU 156 150 150 LEU LEU A . n A 1 157 ASN 157 151 151 ASN ASN A . n A 1 158 ASN 158 152 152 ASN ASN A . n A 1 159 SER 159 153 153 SER SER A . n A 1 160 LEU 160 154 154 LEU LEU A . n A 1 161 LYS 161 155 155 LYS LYS A . n A 1 162 GLN 162 156 156 GLN GLN A . n A 1 163 VAL 163 157 157 VAL VAL A . n A 1 164 LEU 164 158 158 LEU LEU A . n A 1 165 GLN 165 159 159 GLN GLN A . n A 1 166 PHE 166 160 160 PHE PHE A . n A 1 167 ILE 167 161 161 ILE ILE A . n A 1 168 ALA 168 162 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 202 202 ADP ADP A . C 3 S3P 1 201 201 S3P S3P A . D 4 HOH 1 163 1 HOH HOH A . D 4 HOH 2 164 2 HOH HOH A . D 4 HOH 3 165 3 HOH HOH A . D 4 HOH 4 166 4 HOH HOH A . D 4 HOH 5 167 5 HOH HOH A . D 4 HOH 6 168 6 HOH HOH A . D 4 HOH 7 169 7 HOH HOH A . D 4 HOH 8 170 8 HOH HOH A . D 4 HOH 9 171 9 HOH HOH A . D 4 HOH 10 172 10 HOH HOH A . D 4 HOH 11 173 11 HOH HOH A . D 4 HOH 12 174 12 HOH HOH A . D 4 HOH 13 175 13 HOH HOH A . D 4 HOH 14 176 14 HOH HOH A . D 4 HOH 15 177 15 HOH HOH A . D 4 HOH 16 178 16 HOH HOH A . D 4 HOH 17 179 17 HOH HOH A . D 4 HOH 18 180 18 HOH HOH A . D 4 HOH 19 181 19 HOH HOH A . D 4 HOH 20 182 20 HOH HOH A . D 4 HOH 21 183 21 HOH HOH A . D 4 HOH 22 184 22 HOH HOH A . D 4 HOH 23 185 23 HOH HOH A . D 4 HOH 24 186 24 HOH HOH A . D 4 HOH 25 187 25 HOH HOH A . D 4 HOH 26 188 26 HOH HOH A . D 4 HOH 27 189 27 HOH HOH A . D 4 HOH 28 190 28 HOH HOH A . D 4 HOH 29 191 29 HOH HOH A . D 4 HOH 30 192 30 HOH HOH A . D 4 HOH 31 193 32 HOH HOH A . D 4 HOH 32 194 34 HOH HOH A . D 4 HOH 33 195 36 HOH HOH A . D 4 HOH 34 196 37 HOH HOH A . D 4 HOH 35 197 39 HOH HOH A . D 4 HOH 36 198 42 HOH HOH A . D 4 HOH 37 199 44 HOH HOH A . D 4 HOH 38 200 45 HOH HOH A . D 4 HOH 39 203 47 HOH HOH A . D 4 HOH 40 204 50 HOH HOH A . D 4 HOH 41 205 51 HOH HOH A . D 4 HOH 42 206 52 HOH HOH A . D 4 HOH 43 207 54 HOH HOH A . D 4 HOH 44 208 55 HOH HOH A . D 4 HOH 45 209 57 HOH HOH A . D 4 HOH 46 210 58 HOH HOH A . D 4 HOH 47 211 59 HOH HOH A . D 4 HOH 48 212 60 HOH HOH A . D 4 HOH 49 213 61 HOH HOH A . D 4 HOH 50 214 62 HOH HOH A . D 4 HOH 51 215 63 HOH HOH A . D 4 HOH 52 216 64 HOH HOH A . D 4 HOH 53 217 65 HOH HOH A . D 4 HOH 54 218 66 HOH HOH A . D 4 HOH 55 219 68 HOH HOH A . D 4 HOH 56 220 70 HOH HOH A . D 4 HOH 57 221 72 HOH HOH A . D 4 HOH 58 222 74 HOH HOH A . D 4 HOH 59 223 75 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-05-30 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A HIS -2 ? A HIS 4 5 1 Y 1 A HIS -1 ? A HIS 5 6 1 Y 1 A HIS 0 ? A HIS 6 7 1 Y 1 A MET 1 ? A MET 7 8 1 Y 1 A ALA 162 ? A ALA 168 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 GLN N N N N 116 GLN CA C N S 117 GLN C C N N 118 GLN O O N N 119 GLN CB C N N 120 GLN CG C N N 121 GLN CD C N N 122 GLN OE1 O N N 123 GLN NE2 N N N 124 GLN OXT O N N 125 GLN H H N N 126 GLN H2 H N N 127 GLN HA H N N 128 GLN HB2 H N N 129 GLN HB3 H N N 130 GLN HG2 H N N 131 GLN HG3 H N N 132 GLN HE21 H N N 133 GLN HE22 H N N 134 GLN HXT H N N 135 GLU N N N N 136 GLU CA C N S 137 GLU C C N N 138 GLU O O N N 139 GLU CB C N N 140 GLU CG C N N 141 GLU CD C N N 142 GLU OE1 O N N 143 GLU OE2 O N N 144 GLU OXT O N N 145 GLU H H N N 146 GLU H2 H N N 147 GLU HA H N N 148 GLU HB2 H N N 149 GLU HB3 H N N 150 GLU HG2 H N N 151 GLU HG3 H N N 152 GLU HE2 H N N 153 GLU HXT H N N 154 GLY N N N N 155 GLY CA C N N 156 GLY C C N N 157 GLY O O N N 158 GLY OXT O N N 159 GLY H H N N 160 GLY H2 H N N 161 GLY HA2 H N N 162 GLY HA3 H N N 163 GLY HXT H N N 164 HIS N N N N 165 HIS CA C N S 166 HIS C C N N 167 HIS O O N N 168 HIS CB C N N 169 HIS CG C Y N 170 HIS ND1 N Y N 171 HIS CD2 C Y N 172 HIS CE1 C Y N 173 HIS NE2 N Y N 174 HIS OXT O N N 175 HIS H H N N 176 HIS H2 H N N 177 HIS HA H N N 178 HIS HB2 H N N 179 HIS HB3 H N N 180 HIS HD1 H N N 181 HIS HD2 H N N 182 HIS HE1 H N N 183 HIS HE2 H N N 184 HIS HXT H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 PHE N N N N 278 PHE CA C N S 279 PHE C C N N 280 PHE O O N N 281 PHE CB C N N 282 PHE CG C Y N 283 PHE CD1 C Y N 284 PHE CD2 C Y N 285 PHE CE1 C Y N 286 PHE CE2 C Y N 287 PHE CZ C Y N 288 PHE OXT O N N 289 PHE H H N N 290 PHE H2 H N N 291 PHE HA H N N 292 PHE HB2 H N N 293 PHE HB3 H N N 294 PHE HD1 H N N 295 PHE HD2 H N N 296 PHE HE1 H N N 297 PHE HE2 H N N 298 PHE HZ H N N 299 PHE HXT H N N 300 PRO N N N N 301 PRO CA C N S 302 PRO C C N N 303 PRO O O N N 304 PRO CB C N N 305 PRO CG C N N 306 PRO CD C N N 307 PRO OXT O N N 308 PRO H H N N 309 PRO HA H N N 310 PRO HB2 H N N 311 PRO HB3 H N N 312 PRO HG2 H N N 313 PRO HG3 H N N 314 PRO HD2 H N N 315 PRO HD3 H N N 316 PRO HXT H N N 317 S3P C1 C N N 318 S3P C2 C N N 319 S3P C3 C N R 320 S3P C4 C N S 321 S3P C5 C N R 322 S3P C6 C N N 323 S3P C7 C N N 324 S3P O1 O N N 325 S3P O2 O N N 326 S3P O3 O N N 327 S3P O4 O N N 328 S3P O5 O N N 329 S3P P1 P N N 330 S3P O6 O N N 331 S3P O7 O N N 332 S3P O8 O N N 333 S3P H2 H N N 334 S3P H3 H N N 335 S3P H4 H N N 336 S3P H5 H N N 337 S3P H61 H N N 338 S3P H62 H N N 339 S3P HO2 H N N 340 S3P HO3 H N N 341 S3P HO4 H N N 342 S3P HO7 H N N 343 S3P HO8 H N N 344 SER N N N N 345 SER CA C N S 346 SER C C N N 347 SER O O N N 348 SER CB C N N 349 SER OG O N N 350 SER OXT O N N 351 SER H H N N 352 SER H2 H N N 353 SER HA H N N 354 SER HB2 H N N 355 SER HB3 H N N 356 SER HG H N N 357 SER HXT H N N 358 THR N N N N 359 THR CA C N S 360 THR C C N N 361 THR O O N N 362 THR CB C N R 363 THR OG1 O N N 364 THR CG2 C N N 365 THR OXT O N N 366 THR H H N N 367 THR H2 H N N 368 THR HA H N N 369 THR HB H N N 370 THR HG1 H N N 371 THR HG21 H N N 372 THR HG22 H N N 373 THR HG23 H N N 374 THR HXT H N N 375 TYR N N N N 376 TYR CA C N S 377 TYR C C N N 378 TYR O O N N 379 TYR CB C N N 380 TYR CG C Y N 381 TYR CD1 C Y N 382 TYR CD2 C Y N 383 TYR CE1 C Y N 384 TYR CE2 C Y N 385 TYR CZ C Y N 386 TYR OH O N N 387 TYR OXT O N N 388 TYR H H N N 389 TYR H2 H N N 390 TYR HA H N N 391 TYR HB2 H N N 392 TYR HB3 H N N 393 TYR HD1 H N N 394 TYR HD2 H N N 395 TYR HE1 H N N 396 TYR HE2 H N N 397 TYR HH H N N 398 TYR HXT H N N 399 VAL N N N N 400 VAL CA C N S 401 VAL C C N N 402 VAL O O N N 403 VAL CB C N N 404 VAL CG1 C N N 405 VAL CG2 C N N 406 VAL OXT O N N 407 VAL H H N N 408 VAL H2 H N N 409 VAL HA H N N 410 VAL HB H N N 411 VAL HG11 H N N 412 VAL HG12 H N N 413 VAL HG13 H N N 414 VAL HG21 H N N 415 VAL HG22 H N N 416 VAL HG23 H N N 417 VAL HXT H N N 418 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 GLN N CA sing N N 114 GLN N H sing N N 115 GLN N H2 sing N N 116 GLN CA C sing N N 117 GLN CA CB sing N N 118 GLN CA HA sing N N 119 GLN C O doub N N 120 GLN C OXT sing N N 121 GLN CB CG sing N N 122 GLN CB HB2 sing N N 123 GLN CB HB3 sing N N 124 GLN CG CD sing N N 125 GLN CG HG2 sing N N 126 GLN CG HG3 sing N N 127 GLN CD OE1 doub N N 128 GLN CD NE2 sing N N 129 GLN NE2 HE21 sing N N 130 GLN NE2 HE22 sing N N 131 GLN OXT HXT sing N N 132 GLU N CA sing N N 133 GLU N H sing N N 134 GLU N H2 sing N N 135 GLU CA C sing N N 136 GLU CA CB sing N N 137 GLU CA HA sing N N 138 GLU C O doub N N 139 GLU C OXT sing N N 140 GLU CB CG sing N N 141 GLU CB HB2 sing N N 142 GLU CB HB3 sing N N 143 GLU CG CD sing N N 144 GLU CG HG2 sing N N 145 GLU CG HG3 sing N N 146 GLU CD OE1 doub N N 147 GLU CD OE2 sing N N 148 GLU OE2 HE2 sing N N 149 GLU OXT HXT sing N N 150 GLY N CA sing N N 151 GLY N H sing N N 152 GLY N H2 sing N N 153 GLY CA C sing N N 154 GLY CA HA2 sing N N 155 GLY CA HA3 sing N N 156 GLY C O doub N N 157 GLY C OXT sing N N 158 GLY OXT HXT sing N N 159 HIS N CA sing N N 160 HIS N H sing N N 161 HIS N H2 sing N N 162 HIS CA C sing N N 163 HIS CA CB sing N N 164 HIS CA HA sing N N 165 HIS C O doub N N 166 HIS C OXT sing N N 167 HIS CB CG sing N N 168 HIS CB HB2 sing N N 169 HIS CB HB3 sing N N 170 HIS CG ND1 sing Y N 171 HIS CG CD2 doub Y N 172 HIS ND1 CE1 doub Y N 173 HIS ND1 HD1 sing N N 174 HIS CD2 NE2 sing Y N 175 HIS CD2 HD2 sing N N 176 HIS CE1 NE2 sing Y N 177 HIS CE1 HE1 sing N N 178 HIS NE2 HE2 sing N N 179 HIS OXT HXT sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 ILE N CA sing N N 183 ILE N H sing N N 184 ILE N H2 sing N N 185 ILE CA C sing N N 186 ILE CA CB sing N N 187 ILE CA HA sing N N 188 ILE C O doub N N 189 ILE C OXT sing N N 190 ILE CB CG1 sing N N 191 ILE CB CG2 sing N N 192 ILE CB HB sing N N 193 ILE CG1 CD1 sing N N 194 ILE CG1 HG12 sing N N 195 ILE CG1 HG13 sing N N 196 ILE CG2 HG21 sing N N 197 ILE CG2 HG22 sing N N 198 ILE CG2 HG23 sing N N 199 ILE CD1 HD11 sing N N 200 ILE CD1 HD12 sing N N 201 ILE CD1 HD13 sing N N 202 ILE OXT HXT sing N N 203 LEU N CA sing N N 204 LEU N H sing N N 205 LEU N H2 sing N N 206 LEU CA C sing N N 207 LEU CA CB sing N N 208 LEU CA HA sing N N 209 LEU C O doub N N 210 LEU C OXT sing N N 211 LEU CB CG sing N N 212 LEU CB HB2 sing N N 213 LEU CB HB3 sing N N 214 LEU CG CD1 sing N N 215 LEU CG CD2 sing N N 216 LEU CG HG sing N N 217 LEU CD1 HD11 sing N N 218 LEU CD1 HD12 sing N N 219 LEU CD1 HD13 sing N N 220 LEU CD2 HD21 sing N N 221 LEU CD2 HD22 sing N N 222 LEU CD2 HD23 sing N N 223 LEU OXT HXT sing N N 224 LYS N CA sing N N 225 LYS N H sing N N 226 LYS N H2 sing N N 227 LYS CA C sing N N 228 LYS CA CB sing N N 229 LYS CA HA sing N N 230 LYS C O doub N N 231 LYS C OXT sing N N 232 LYS CB CG sing N N 233 LYS CB HB2 sing N N 234 LYS CB HB3 sing N N 235 LYS CG CD sing N N 236 LYS CG HG2 sing N N 237 LYS CG HG3 sing N N 238 LYS CD CE sing N N 239 LYS CD HD2 sing N N 240 LYS CD HD3 sing N N 241 LYS CE NZ sing N N 242 LYS CE HE2 sing N N 243 LYS CE HE3 sing N N 244 LYS NZ HZ1 sing N N 245 LYS NZ HZ2 sing N N 246 LYS NZ HZ3 sing N N 247 LYS OXT HXT sing N N 248 MET N CA sing N N 249 MET N H sing N N 250 MET N H2 sing N N 251 MET CA C sing N N 252 MET CA CB sing N N 253 MET CA HA sing N N 254 MET C O doub N N 255 MET C OXT sing N N 256 MET CB CG sing N N 257 MET CB HB2 sing N N 258 MET CB HB3 sing N N 259 MET CG SD sing N N 260 MET CG HG2 sing N N 261 MET CG HG3 sing N N 262 MET SD CE sing N N 263 MET CE HE1 sing N N 264 MET CE HE2 sing N N 265 MET CE HE3 sing N N 266 MET OXT HXT sing N N 267 PHE N CA sing N N 268 PHE N H sing N N 269 PHE N H2 sing N N 270 PHE CA C sing N N 271 PHE CA CB sing N N 272 PHE CA HA sing N N 273 PHE C O doub N N 274 PHE C OXT sing N N 275 PHE CB CG sing N N 276 PHE CB HB2 sing N N 277 PHE CB HB3 sing N N 278 PHE CG CD1 doub Y N 279 PHE CG CD2 sing Y N 280 PHE CD1 CE1 sing Y N 281 PHE CD1 HD1 sing N N 282 PHE CD2 CE2 doub Y N 283 PHE CD2 HD2 sing N N 284 PHE CE1 CZ doub Y N 285 PHE CE1 HE1 sing N N 286 PHE CE2 CZ sing Y N 287 PHE CE2 HE2 sing N N 288 PHE CZ HZ sing N N 289 PHE OXT HXT sing N N 290 PRO N CA sing N N 291 PRO N CD sing N N 292 PRO N H sing N N 293 PRO CA C sing N N 294 PRO CA CB sing N N 295 PRO CA HA sing N N 296 PRO C O doub N N 297 PRO C OXT sing N N 298 PRO CB CG sing N N 299 PRO CB HB2 sing N N 300 PRO CB HB3 sing N N 301 PRO CG CD sing N N 302 PRO CG HG2 sing N N 303 PRO CG HG3 sing N N 304 PRO CD HD2 sing N N 305 PRO CD HD3 sing N N 306 PRO OXT HXT sing N N 307 S3P C1 C2 doub N N 308 S3P C1 C6 sing N N 309 S3P C1 C7 sing N N 310 S3P C2 C3 sing N N 311 S3P C2 H2 sing N N 312 S3P C3 C4 sing N N 313 S3P C3 O1 sing N N 314 S3P C3 H3 sing N N 315 S3P C4 C5 sing N N 316 S3P C4 O2 sing N N 317 S3P C4 H4 sing N N 318 S3P C5 C6 sing N N 319 S3P C5 O3 sing N N 320 S3P C5 H5 sing N N 321 S3P C6 H61 sing N N 322 S3P C6 H62 sing N N 323 S3P C7 O4 sing N N 324 S3P C7 O5 doub N N 325 S3P O1 P1 sing N N 326 S3P O2 HO2 sing N N 327 S3P O3 HO3 sing N N 328 S3P O4 HO4 sing N N 329 S3P P1 O6 doub N N 330 S3P P1 O7 sing N N 331 S3P P1 O8 sing N N 332 S3P O7 HO7 sing N N 333 S3P O8 HO8 sing N N 334 SER N CA sing N N 335 SER N H sing N N 336 SER N H2 sing N N 337 SER CA C sing N N 338 SER CA CB sing N N 339 SER CA HA sing N N 340 SER C O doub N N 341 SER C OXT sing N N 342 SER CB OG sing N N 343 SER CB HB2 sing N N 344 SER CB HB3 sing N N 345 SER OG HG sing N N 346 SER OXT HXT sing N N 347 THR N CA sing N N 348 THR N H sing N N 349 THR N H2 sing N N 350 THR CA C sing N N 351 THR CA CB sing N N 352 THR CA HA sing N N 353 THR C O doub N N 354 THR C OXT sing N N 355 THR CB OG1 sing N N 356 THR CB CG2 sing N N 357 THR CB HB sing N N 358 THR OG1 HG1 sing N N 359 THR CG2 HG21 sing N N 360 THR CG2 HG22 sing N N 361 THR CG2 HG23 sing N N 362 THR OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 SHIKIMATE-3-PHOSPHATE S3P 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZUI _pdbx_initial_refinement_model.details 'PDB ENTRY 1ZUI' #