HEADER LYASE 05-MAY-10 3MW8 TITLE CRYSTAL STRUCTURE OF AN UROPORPHYRINOGEN-III SYNTHASE (SAMA_3255) FROM TITLE 2 SHEWANELLA AMAZONENSIS SB2B AT 1.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROPORPHYRINOGEN-III SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: ATCC BAA-1098 / SB2B; SOURCE 5 GENE: SAMA_3255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE, HEMD-LIKE, HEME EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3MW8 1 REMARK SEQADV REVDAT 3 17-JUL-19 3MW8 1 REMARK LINK REVDAT 2 25-OCT-17 3MW8 1 REMARK REVDAT 1 19-MAY-10 3MW8 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN UROPORPHYRINOGEN-III SYNTHASE JRNL TITL 2 (SAMA_3255) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.65 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1920 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1328 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2608 ; 1.576 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3251 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 6.002 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;33.784 ;23.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;13.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2131 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 365 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1228 ; 2.013 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 493 ; 0.596 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1982 ; 3.063 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 692 ; 5.099 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 616 ; 7.541 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 32 REMARK 3 RESIDUE RANGE : A 155 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3407 -0.6854 49.1621 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.1432 REMARK 3 T33: 0.0271 T12: -0.0194 REMARK 3 T13: -0.0037 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.3301 L22: 2.6487 REMARK 3 L33: 1.3337 L12: -1.1146 REMARK 3 L13: 0.0952 L23: 0.3793 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.4272 S13: -0.0195 REMARK 3 S21: -0.1610 S22: 0.2107 S23: 0.0220 REMARK 3 S31: -0.0367 S32: 0.1209 S33: -0.1799 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7130 2.7764 24.9658 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0075 REMARK 3 T33: 0.0529 T12: 0.0056 REMARK 3 T13: -0.0122 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.7980 L22: 1.8436 REMARK 3 L33: 1.2646 L12: 0.4937 REMARK 3 L13: 0.4153 L23: 0.5172 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.0046 S13: 0.0298 REMARK 3 S21: -0.1535 S22: 0.0106 S23: 0.1248 REMARK 3 S31: -0.0072 S32: 0.0596 S33: 0.0280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. ETHYLENE GLYCOL (EDO) MODELED ARE PRESENT CRYO REMARK 3 SOLUTION. REMARK 4 REMARK 4 3MW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.525 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1500M DI-AMMONIUM HYDROGEN REMARK 280 PHOSPHATE, 33.0000% POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.03650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 100 REMARK 465 ASP A 101 REMARK 465 SER A 102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 46 CD OE1 OE2 REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 398935 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. CLEAVAGE OF THE TAG WITH TEV PROTEASE LEAVES REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. HOWEVER, THE REMARK 999 CLEAVAGE OF THE TAG WAS INCOMPLETE LEAVING A MIXTURE OF PROTEIN REMARK 999 WITH THE INTACT TAG AND CLEAVED TAG. DBREF 3MW8 A 1 239 UNP A1SAQ1 A1SAQ1_SHEAM 1 239 SEQADV 3MW8 GLY A 0 UNP A1SAQ1 EXPRESSION TAG SEQRES 1 A 240 GLY MSE LYS LEU LEU LEU THR ARG PRO GLU GLY LYS ASN SEQRES 2 A 240 ALA ALA MSE ALA SER ALA LEU ASP ALA LEU ALA ILE PRO SEQRES 3 A 240 TYR LEU VAL GLU PRO LEU LEU SER VAL GLU ALA ALA ALA SEQRES 4 A 240 VAL THR GLN ALA GLN LEU ASP GLU LEU SER ARG ALA ASP SEQRES 5 A 240 ILE LEU ILE PHE ILE SER THR SER ALA VAL SER PHE ALA SEQRES 6 A 240 THR PRO TRP LEU LYS ASP GLN TRP PRO LYS ALA THR TYR SEQRES 7 A 240 TYR ALA VAL GLY ASP ALA THR ALA ASP ALA LEU ALA LEU SEQRES 8 A 240 GLN GLY ILE THR ALA GLU ARG SER PRO ALA ASP SER GLN SEQRES 9 A 240 ALA THR GLU GLY LEU LEU THR LEU PRO SER LEU GLU GLN SEQRES 10 A 240 VAL SER GLY LYS GLN ILE VAL ILE VAL ARG GLY LYS GLY SEQRES 11 A 240 GLY ARG GLU ALA MSE ALA ASP GLY LEU ARG LEU ARG GLY SEQRES 12 A 240 ALA ASN VAL SER TYR LEU GLU VAL TYR GLN ARG ALA CYS SEQRES 13 A 240 PRO PRO LEU ASP ALA PRO ALA SER VAL SER ARG TRP GLN SEQRES 14 A 240 SER PHE GLY ILE ASP THR ILE VAL VAL THR SER GLY GLU SEQRES 15 A 240 VAL LEU GLU ASN LEU ILE ASN LEU VAL PRO LYS ASP SER SEQRES 16 A 240 PHE ALA TRP LEU ARG ASP CYS HIS ILE ILE VAL PRO SER SEQRES 17 A 240 ALA ARG VAL GLU THR GLN ALA ARG LYS LYS GLY LEU ARG SEQRES 18 A 240 ARG VAL THR ASN ALA GLY ALA ALA ASN GLN ALA ALA VAL SEQRES 19 A 240 LEU ASP ALA LEU GLY MSE MODRES 3MW8 MSE A 1 MET SELENOMETHIONINE MODRES 3MW8 MSE A 15 MET SELENOMETHIONINE MODRES 3MW8 MSE A 134 MET SELENOMETHIONINE MODRES 3MW8 MSE A 239 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 15 8 HET MSE A 134 8 HET MSE A 239 9 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO 12(C2 H6 O2) FORMUL 14 HOH *226(H2 O) HELIX 1 1 ASN A 12 ALA A 23 1 12 HELIX 2 2 THR A 40 SER A 48 1 9 HELIX 3 3 SER A 57 LYS A 69 1 13 HELIX 4 4 GLY A 81 GLN A 91 1 11 HELIX 5 5 ALA A 104 GLU A 115 5 12 HELIX 6 6 GLU A 132 ARG A 141 1 10 HELIX 7 7 ASP A 159 GLY A 171 1 13 HELIX 8 8 SER A 179 VAL A 190 1 12 HELIX 9 9 PRO A 191 ASP A 193 5 3 HELIX 10 10 SER A 194 CYS A 201 1 8 HELIX 11 11 SER A 207 LYS A 217 1 11 HELIX 12 12 ASN A 229 LEU A 237 1 9 SHEET 1 A 5 TYR A 26 VAL A 28 0 SHEET 2 A 5 LEU A 3 LEU A 5 1 N LEU A 5 O LEU A 27 SHEET 3 A 5 THR A 174 VAL A 176 1 O THR A 174 N LEU A 4 SHEET 4 A 5 HIS A 202 VAL A 205 1 O ILE A 204 N ILE A 175 SHEET 5 A 5 VAL A 222 ASN A 224 1 O THR A 223 N ILE A 203 SHEET 1 B 6 SER A 33 ALA A 36 0 SHEET 2 B 6 ASN A 144 ALA A 154 -1 O GLN A 152 N GLU A 35 SHEET 3 B 6 GLN A 121 GLY A 127 1 N ILE A 124 O SER A 146 SHEET 4 B 6 ILE A 52 PHE A 55 1 N ILE A 54 O VAL A 125 SHEET 5 B 6 THR A 76 ALA A 79 1 O TYR A 78 N PHE A 55 SHEET 6 B 6 GLU A 96 ARG A 97 1 O GLU A 96 N ALA A 79 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C ALA A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N ALA A 16 1555 1555 1.33 LINK C ALA A 133 N MSE A 134 1555 1555 1.34 LINK C MSE A 134 N ALA A 135 1555 1555 1.34 LINK C GLY A 238 N MSE A 239 1555 1555 1.33 SITE 1 AC1 5 SER A 179 GLY A 180 GLU A 181 VAL A 210 SITE 2 AC1 5 HOH A 399 SITE 1 AC2 3 ASN A 224 ALA A 225 ASP A 235 SITE 1 AC3 4 ARG A 139 ALA A 143 HOH A 467 HOH A 512 SITE 1 AC4 4 ASP A 173 TRP A 197 ASP A 200 HOH A 523 SITE 1 AC5 3 GLN A 43 TYR A 147 GLU A 149 SITE 1 AC6 6 GLU A 115 GLN A 116 VAL A 117 SER A 118 SITE 2 AC6 6 ARG A 141 HOH A 514 SITE 1 AC7 4 ILE A 93 THR A 94 EDO A 310 HOH A 340 SITE 1 AC8 1 ARG A 166 SITE 1 AC9 4 LEU A 44 LEU A 68 GLN A 71 PRO A 73 SITE 1 BC1 4 PRO A 73 LYS A 74 ALA A 75 EDO A 307 SITE 1 BC2 5 ARG A 126 GLY A 129 GLY A 130 GLU A 149 SITE 2 BC2 5 HOH A 464 SITE 1 BC3 6 GLN A 43 GLU A 46 VAL A 123 SER A 146 SITE 2 BC3 6 TYR A 147 LEU A 148 CRYST1 51.390 50.073 58.255 90.00 90.04 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019459 0.000000 0.000014 0.00000 SCALE2 0.000000 0.019971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017166 0.00000