HEADER HYDROLASE 06-MAY-10 3MWK TITLE Q28E MUTANT OF HERA N-TERMINAL RECA-LIKE DOMAIN, COMPLEX WITH 8-OXO- TITLE 2 AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: TT_C1895; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA HELICASE, RIBOSOME BIOGENESIS, THERMOPHILIC, HYDROLASE, ATPASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 2 01-NOV-23 3MWK 1 REMARK SEQADV REVDAT 1 23-MAR-11 3MWK 0 JRNL AUTH J.STROHMEIER,I.HERTEL,U.DIEDERICHSEN,M.G.RUDOLPH, JRNL AUTH 2 D.KLOSTERMEIER JRNL TITL CHANGING NUCLEOTIDE SPECIFICITY OF THE DEAD-BOX HELICASE JRNL TITL 2 HERA ABROGATES COMMUNICATION BETWEEN THE Q-MOTIF AND THE JRNL TITL 3 P-LOOP. JRNL REF BIOL.CHEM. V. 392 357 2011 JRNL REFN ISSN 1431-6730 JRNL PMID 21391900 JRNL DOI 10.1515/BC.2011.034 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 75950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5165 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3278 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2248 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4472 ; 1.981 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5525 ; 1.108 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 5.875 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;31.169 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 574 ;12.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.524 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3573 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 602 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 17965 ; 7.625 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 325 ;16.793 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5465 ;15.951 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82310 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : 0.01900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.00300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.95800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.00150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.95800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.00450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.95800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.00150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.95800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.95800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.00450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.00300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 366 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 154 OG1 THR A 184 2.15 REMARK 500 N GLY B 70 O ARG B 119 2.16 REMARK 500 OE2 GLU A 163 O HOH A 277 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 232 O HOH A 388 3545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 61 CD GLU A 61 OE2 -0.075 REMARK 500 GLU A 155 CB GLU A 155 CG 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 184 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG B 136 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 154 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ILE B 206 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 152 60.62 73.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 176 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OP B 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GXS RELATED DB: PDB REMARK 900 RELATED ID: 2GXQ RELATED DB: PDB REMARK 900 RELATED ID: 2GXU RELATED DB: PDB REMARK 900 RELATED ID: 3MWJ RELATED DB: PDB REMARK 900 RELATED ID: 3MWL RELATED DB: PDB DBREF 3MWK A 1 207 UNP Q72GF3 Q72GF3_THET2 8 214 DBREF 3MWK B 1 207 UNP Q72GF3 Q72GF3_THET2 8 214 SEQADV 3MWK GLU A 28 UNP Q72GF3 GLN 35 ENGINEERED MUTATION SEQADV 3MWK GLU B 28 UNP Q72GF3 GLN 35 ENGINEERED MUTATION SEQRES 1 A 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 A 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 A 207 ILE GLU ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 A 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 A 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 A 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 A 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 A 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 A 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 A 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 A 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 A 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 A 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 A 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 A 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 A 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS SEQRES 1 B 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 B 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 B 207 ILE GLU ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 B 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 B 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 B 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 B 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 B 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 B 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 B 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 B 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 B 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 B 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 B 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 B 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 B 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 B 208 5 HET 8OP B 209 24 HETNAM SO4 SULFATE ION HETNAM 8OP [(2R,3S,4R,5R)-5-(6-AZANYL-8-OXO-7H-PURIN-9-YL)-3,4- HETNAM 2 8OP DIHYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 8OP C10 H14 N5 O8 P FORMUL 7 HOH *324(H2 O) HELIX 1 1 GLU A 2 PHE A 6 5 5 HELIX 2 2 LYS A 9 ARG A 19 1 11 HELIX 3 3 THR A 25 GLU A 37 1 13 HELIX 4 4 THR A 52 LEU A 63 1 12 HELIX 5 5 THR A 81 ALA A 96 1 16 HELIX 6 6 TYR A 110 GLY A 120 1 11 HELIX 7 7 THR A 127 GLN A 137 1 11 HELIX 8 8 GLU A 152 GLY A 160 1 9 HELIX 9 9 PHE A 161 ALA A 171 1 11 HELIX 10 10 PRO A 186 MET A 197 1 12 HELIX 11 11 GLU B 2 PHE B 6 5 5 HELIX 12 12 LYS B 9 ARG B 19 1 11 HELIX 13 13 THR B 25 GLU B 37 1 13 HELIX 14 14 THR B 52 LEU B 63 1 12 HELIX 15 15 THR B 81 ALA B 96 1 16 HELIX 16 16 TYR B 110 GLY B 120 1 11 HELIX 17 17 THR B 127 GLN B 137 1 11 HELIX 18 18 GLU B 152 MET B 159 1 8 HELIX 19 19 PHE B 161 ALA B 171 1 11 HELIX 20 20 PRO B 186 MET B 197 1 12 SHEET 1 A14 VAL A 101 VAL A 104 0 SHEET 2 A14 ALA A 123 ALA A 126 1 O VAL A 125 N VAL A 104 SHEET 3 A14 ALA A 75 LEU A 78 1 N VAL A 77 O ALA A 126 SHEET 4 A14 VAL A 147 ASP A 151 1 O VAL A 149 N LEU A 78 SHEET 5 A14 GLN A 177 PHE A 181 1 O PHE A 181 N LEU A 150 SHEET 6 A14 LEU A 41 GLN A 44 1 N GLY A 43 O LEU A 180 SHEET 7 A14 VAL A 201 ASN A 204 1 O ILE A 203 N GLN A 44 SHEET 8 A14 VAL B 201 ASN B 204 -1 O ASN B 204 N LEU A 202 SHEET 9 A14 LEU B 41 GLN B 44 1 N GLN B 44 O ILE B 203 SHEET 10 A14 GLN B 177 PHE B 181 1 O LEU B 180 N GLY B 43 SHEET 11 A14 VAL B 147 LEU B 150 1 N ALA B 148 O GLN B 177 SHEET 12 A14 ALA B 75 LEU B 78 1 N LEU B 78 O VAL B 149 SHEET 13 A14 ALA B 123 ALA B 126 1 O ALA B 126 N VAL B 77 SHEET 14 A14 VAL B 101 VAL B 104 1 N VAL B 102 O ALA B 123 SITE 1 AC1 9 ARG A 82 GLY A 106 THR A 127 GLY A 129 SITE 2 AC1 9 ARG A 130 HOH A 289 HOH A 400 GLY B 107 SITE 3 AC1 9 ARG B 130 SITE 1 AC2 3 LYS A 100 ARG A 119 HOH A 399 SITE 1 AC3 10 ARG A 82 GLY A 107 GLY B 106 THR B 127 SITE 2 AC3 10 GLY B 129 ARG B 130 PHE B 161 HOH B 214 SITE 3 AC3 10 HOH B 231 HOH B 260 SITE 1 AC4 14 PHE B 3 LEU B 21 THR B 23 PRO B 24 SITE 2 AC4 14 THR B 25 GLU B 28 GLY B 48 GLY B 50 SITE 3 AC4 14 LYS B 51 THR B 52 GLU B 91 HOH B 236 SITE 4 AC4 14 HOH B 269 HOH B 306 CRYST1 91.916 91.916 108.006 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010879 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009259 0.00000