HEADER HYDROLASE/DNA 07-MAY-10 3MXA TITLE MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS TITLE 2 HUMAN RAG1 LOCUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCV3V2(G19S); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*TP*GP*TP*TP*CP*TP*CP*AP*GP*GP*TP*AP*C)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*CP*TP*CP*AP*GP*CP*CP*AP*GP*A)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*GP*AP*GP*GP*TP*AP*C)-3'); COMPND 16 CHAIN: E; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*GP*AP*AP*CP*AP*A)-3'); COMPND 20 CHAIN: F; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24D(+); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; SOURCE 18 MOL_ID: 5; SOURCE 19 SYNTHETIC: YES; SOURCE 20 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.G.MUNOZ,J.PRIETO,S.SUBRAMANIAN,J.COLOMA,G.MONTOYA REVDAT 3 21-FEB-24 3MXA 1 REMARK LINK REVDAT 2 09-FEB-11 3MXA 1 JRNL REVDAT 1 06-OCT-10 3MXA 0 JRNL AUTH I.G.MUNOZ,J.PRIETO,S.SUBRAMANIAN,J.COLOMA,P.REDONDO, JRNL AUTH 2 M.VILLATE,N.MERINO,M.MARENCHINO,M.D'ABRAMO,F.L.GERVASIO, JRNL AUTH 3 S.GRIZOT,F.DABOUSSI,J.SMITH,I.CHION-SOTINEL,F.PAQUES, JRNL AUTH 4 P.DUCHATEAU,A.ALIBES,F.STRICHER,L.SERRANO,F.J.BLANCO, JRNL AUTH 5 G.MONTOYA JRNL TITL MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE JRNL TITL 2 ENDOGENOUS HUMAN RAG1 LOCUS. JRNL REF NUCLEIC ACIDS RES. V. 39 729 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20846960 JRNL DOI 10.1093/NAR/GKQ801 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9522 - 4.9478 0.99 2672 163 0.1591 0.1957 REMARK 3 2 4.9478 - 3.9303 1.00 2551 143 0.1340 0.1669 REMARK 3 3 3.9303 - 3.4344 1.00 2531 126 0.1664 0.2369 REMARK 3 4 3.4344 - 3.1208 1.00 2529 124 0.1768 0.2148 REMARK 3 5 3.1208 - 2.8973 1.00 2497 139 0.2046 0.2700 REMARK 3 6 2.8973 - 2.7267 1.00 2522 120 0.1956 0.2679 REMARK 3 7 2.7267 - 2.5902 1.00 2472 123 0.1844 0.2475 REMARK 3 8 2.5902 - 2.4775 1.00 2505 126 0.1866 0.2634 REMARK 3 9 2.4775 - 2.3822 1.00 2469 134 0.1861 0.2578 REMARK 3 10 2.3822 - 2.3000 0.99 2450 139 0.1995 0.2552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 40.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3568 REMARK 3 ANGLE : 1.258 5021 REMARK 3 CHIRALITY : 0.065 576 REMARK 3 PLANARITY : 0.004 467 REMARK 3 DIHEDRAL : 21.785 1378 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN F AND RESID 615:624) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0295 11.3113 -26.8451 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.1946 REMARK 3 T33: 0.1086 T12: -0.0564 REMARK 3 T13: 0.0611 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.9561 L22: 0.9316 REMARK 3 L33: 2.4361 L12: 0.4818 REMARK 3 L13: 0.5784 L23: 0.5874 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0125 S13: 0.0209 REMARK 3 S21: 0.0050 S22: 0.0311 S23: -0.0963 REMARK 3 S31: 0.1344 S32: -0.2321 S33: -0.0328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 35.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : 0.04900 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 400, 0.1M MES PH 6.5, 5% REMARK 280 ETHANOL, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ASP A 154 REMARK 465 SER A 155 REMARK 465 LEU A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 LYS A 159 REMARK 465 LYS A 160 REMARK 465 LYS A 161 REMARK 465 SER A 162 REMARK 465 SER A 163 REMARK 465 PRO A 164 REMARK 465 ALA A 165 REMARK 465 ALA A 166 REMARK 465 GLY A 167 REMARK 465 GLY A 168 REMARK 465 SER A 169 REMARK 465 ASP A 170 REMARK 465 LYS A 171 REMARK 465 TYR A 172 REMARK 465 ASN A 173 REMARK 465 GLN A 174 REMARK 465 ALA A 175 REMARK 465 LEU A 176 REMARK 465 SER A 177 REMARK 465 LYS A 178 REMARK 465 TYR A 179 REMARK 465 ASN A 180 REMARK 465 GLN A 181 REMARK 465 ALA A 182 REMARK 465 LEU A 183 REMARK 465 SER A 184 REMARK 465 LYS A 185 REMARK 465 TYR A 186 REMARK 465 ASN A 187 REMARK 465 GLN A 188 REMARK 465 ALA A 189 REMARK 465 LEU A 190 REMARK 465 SER A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 LEU A 346 REMARK 465 SER A 347 REMARK 465 GLU A 348 REMARK 465 LYS A 349 REMARK 465 LYS A 350 REMARK 465 LYS A 351 REMARK 465 SER A 352 REMARK 465 SER A 353 REMARK 465 PRO A 354 REMARK 465 LEU A 355 REMARK 465 GLU A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 515 P DC D 515 OP3 -0.123 REMARK 500 DC F 615 P DC F 615 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 510 O4' - C1' - N9 ANGL. DEV. = -6.1 DEGREES REMARK 500 DA C 513 O4' - C1' - N9 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC C 514 C3' - C2' - C1' ANGL. DEV. = -7.6 DEGREES REMARK 500 DC C 514 N1 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 DC D 515 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT D 516 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC D 517 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 519 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 606 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA E 613 O4' - C1' - N9 ANGL. DEV. = -7.9 DEGREES REMARK 500 DC E 614 C3' - C2' - C1' ANGL. DEV. = -7.5 DEGREES REMARK 500 DC E 614 N1 - C1' - C2' ANGL. DEV. = 9.3 DEGREES REMARK 500 DG F 619 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 64.44 -110.63 REMARK 500 LYS A 139 -41.11 -140.59 REMARK 500 ARG A 149 42.66 -70.14 REMARK 500 SER A 210 -60.01 -91.54 REMARK 500 ARG A 221 117.14 -166.11 REMARK 500 LYS A 330 -32.72 -131.22 REMARK 500 ALA A 341 24.94 -78.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 364 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 19 O REMARK 620 2 ASP A 211 OD2 97.7 REMARK 620 3 HOH A 396 O 88.3 91.9 REMARK 620 4 DC D 515 OP3 85.8 105.3 162.4 REMARK 620 5 DC D 515 OP1 83.8 167.1 101.0 62.0 REMARK 620 6 DC E 614 OP1 173.4 84.1 85.2 99.9 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 363 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD2 REMARK 620 2 SER A 210 O 95.0 REMARK 620 3 HOH A 395 O 95.9 91.2 REMARK 620 4 DC C 514 OP1 89.1 174.8 85.1 REMARK 620 5 DC F 615 OP3 102.2 84.3 161.6 98.1 REMARK 620 6 DC F 615 OP1 165.3 86.9 98.6 90.1 63.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 365 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 211 OD1 87.2 REMARK 620 3 DC C 514 O3' 90.7 163.7 REMARK 620 4 DC D 515 OP3 94.6 81.7 82.4 REMARK 620 5 DC E 614 O3' 172.2 95.1 89.2 93.1 REMARK 620 6 DC F 615 OP3 90.3 103.7 92.4 172.9 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE C 339 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MX9 RELATED DB: PDB REMARK 900 RELATED ID: 3MXB RELATED DB: PDB DBREF 3MXA A 0 362 PDB 3MXA 3MXA 0 362 DBREF 3MXA C 501 514 PDB 3MXA 3MXA 501 514 DBREF 3MXA D 515 524 PDB 3MXA 3MXA 515 524 DBREF 3MXA E 601 614 PDB 3MXA 3MXA 601 614 DBREF 3MXA F 615 624 PDB 3MXA 3MXA 615 624 SEQRES 1 A 362 MET ALA ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR SEQRES 2 A 362 LEU ALA GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA SEQRES 3 A 362 GLN ILE ASN PRO ASN GLN SER SER LYS PHE LYS HIS ARG SEQRES 4 A 362 LEU ARG LEU THR PHE TYR VAL THR GLN LYS THR GLN ARG SEQRES 5 A 362 ARG TRP PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL SEQRES 6 A 362 GLY TYR VAL ARG ASP SER GLY SER VAL SER GLN TYR VAL SEQRES 7 A 362 LEU SER GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN SEQRES 8 A 362 LEU GLN PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN SEQRES 9 A 362 LEU VAL LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS SEQRES 10 A 362 GLU SER PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL SEQRES 11 A 362 ASP GLN ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS SEQRES 12 A 362 THR THR SER GLU THR VAL ARG ALA VAL LEU ASP SER LEU SEQRES 13 A 362 SER GLY LYS LYS LYS SER SER PRO ALA ALA GLY GLY SER SEQRES 14 A 362 ASP LYS TYR ASN GLN ALA LEU SER LYS TYR ASN GLN ALA SEQRES 15 A 362 LEU SER LYS TYR ASN GLN ALA LEU SER GLY GLY GLY GLY SEQRES 16 A 362 SER ASN LYS GLU PHE LEU LEU TYR LEU ALA GLY PHE VAL SEQRES 17 A 362 ASP SER ASP GLY SER ILE ILE ALA GLN ILE LYS PRO ARG SEQRES 18 A 362 GLN SER ASN LYS PHE LYS HIS GLN LEU SER LEU THR PHE SEQRES 19 A 362 ALA VAL THR GLN LYS THR GLN ARG ARG TRP PHE LEU ASP SEQRES 20 A 362 LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR VAL TYR ASP SEQRES 21 A 362 SER GLY SER VAL SER ASP TYR ARG LEU SER GLU ILE LYS SEQRES 22 A 362 PRO LEU HIS ASN PHE LEU THR GLN LEU GLN PRO PHE LEU SEQRES 23 A 362 LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL LEU LYS ILE SEQRES 24 A 362 ILE GLU GLN LEU PRO SER ALA LYS GLU SER PRO ASP LYS SEQRES 25 A 362 PHE LEU GLU VAL CYS THR TRP VAL ASP GLN ILE ALA ALA SEQRES 26 A 362 LEU ASN ASP SER LYS THR ARG LYS THR THR SER GLU THR SEQRES 27 A 362 VAL ARG ALA VAL LEU ASP SER LEU SER GLU LYS LYS LYS SEQRES 28 A 362 SER SER PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 14 DT DT DG DT DT DC DT DC DA DG DG DT DA SEQRES 2 C 14 DC SEQRES 1 D 10 DC DT DC DA DG DC DC DA DG DA SEQRES 1 E 14 DT DC DT DG DG DC DT DG DA DG DG DT DA SEQRES 2 E 14 DC SEQRES 1 F 10 DC DT DG DA DG DA DA DC DA DA HET MN A 363 1 HET MN A 364 1 HET MN A 365 1 HET EOH A 366 3 HET EOH A 367 3 HET EOH A 368 3 HET 1PE C 339 16 HETNAM MN MANGANESE (II) ION HETNAM EOH ETHANOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 6 MN 3(MN 2+) FORMUL 9 EOH 3(C2 H6 O) FORMUL 12 1PE C10 H22 O6 FORMUL 13 HOH *120(H2 O) HELIX 1 1 ASN A 6 ASP A 20 1 15 HELIX 2 2 ARG A 51 GLY A 63 1 13 HELIX 3 3 GLU A 80 GLN A 92 1 13 HELIX 4 4 PRO A 93 LEU A 95 5 3 HELIX 5 5 LYS A 98 LYS A 116 1 19 HELIX 6 6 SER A 118 ASN A 136 1 19 HELIX 7 7 THR A 144 ARG A 149 1 6 HELIX 8 8 SER A 196 ASP A 211 1 16 HELIX 9 9 ARG A 242 GLY A 254 1 13 HELIX 10 10 GLU A 271 GLN A 283 1 13 HELIX 11 11 PRO A 284 LEU A 286 5 3 HELIX 12 12 LYS A 289 GLN A 302 1 14 HELIX 13 13 GLN A 302 LYS A 307 1 6 HELIX 14 14 SER A 309 ASN A 327 1 19 HELIX 15 15 THR A 335 ARG A 340 1 6 HELIX 16 16 ALA A 341 LEU A 343 5 3 SHEET 1 A 4 GLY A 21 PRO A 29 0 SHEET 2 A 4 HIS A 37 LYS A 48 -1 O ARG A 38 N ASN A 28 SHEET 3 A 4 VAL A 73 LEU A 78 -1 O TYR A 76 N VAL A 45 SHEET 4 A 4 TYR A 66 SER A 70 -1 N TYR A 66 O VAL A 77 SHEET 1 B 4 GLY A 212 PRO A 220 0 SHEET 2 B 4 HIS A 228 LYS A 239 -1 O SER A 231 N GLN A 217 SHEET 3 B 4 VAL A 264 LEU A 269 -1 O SER A 265 N GLN A 238 SHEET 4 B 4 TYR A 257 SER A 261 -1 N TYR A 257 O ARG A 268 LINK O GLY A 19 MN MN A 364 1555 1555 2.31 LINK OD2 ASP A 20 MN MN A 363 1555 1555 2.18 LINK OD1 ASP A 20 MN MN A 365 1555 1555 2.19 LINK O SER A 210 MN MN A 363 1555 1555 2.26 LINK OD2 ASP A 211 MN MN A 364 1555 1555 2.20 LINK OD1 ASP A 211 MN MN A 365 1555 1555 2.26 LINK MN MN A 363 O HOH A 395 1555 1555 2.27 LINK MN MN A 363 OP1 DC C 514 1555 1555 2.09 LINK MN MN A 363 OP3 DC F 615 1555 1555 2.25 LINK MN MN A 363 OP1 DC F 615 1555 1555 2.34 LINK MN MN A 364 O HOH A 396 1555 1555 2.05 LINK MN MN A 364 OP3 DC D 515 1555 1555 2.13 LINK MN MN A 364 OP1 DC D 515 1555 1555 2.51 LINK MN MN A 364 OP1 DC E 614 1555 1555 2.10 LINK MN MN A 365 O3' DC C 514 1555 1555 2.55 LINK MN MN A 365 OP3 DC D 515 1555 1555 2.31 LINK MN MN A 365 O3' DC E 614 1555 1555 2.42 LINK MN MN A 365 OP3 DC F 615 1555 1555 2.13 SITE 1 AC1 5 ASP A 20 SER A 210 HOH A 395 DC C 514 SITE 2 AC1 5 DC F 615 SITE 1 AC2 5 GLY A 19 ASP A 211 HOH A 396 DC D 515 SITE 2 AC2 5 DC E 614 SITE 1 AC3 6 ASP A 20 ASP A 211 DC C 514 DC D 515 SITE 2 AC3 6 DC E 614 DC F 615 SITE 1 AC4 7 ARG A 51 LEU A 288 LYS A 289 GLN A 292 SITE 2 AC4 7 LEU A 326 HOH A 387 DT F 616 SITE 1 AC5 6 TYR A 259 SER A 261 VAL A 264 ASP A 266 SITE 2 AC5 6 DT C 507 DC C 508 SITE 1 AC6 4 ALA A 324 ALA A 325 ASN A 327 SER A 329 SITE 1 AC7 5 HOH C 101 DT C 505 DC C 506 DC F 622 SITE 2 AC7 5 DA F 624 CRYST1 72.000 172.390 46.530 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021492 0.00000