data_3MXH # _entry.id 3MXH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3MXH pdb_00003mxh 10.2210/pdb3mxh/pdb NDB NA0554 ? ? RCSB RCSB059116 ? ? WWPDB D_1000059116 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3MUM 'Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP' unspecified PDB 3MUR 'Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP' unspecified PDB 3MUT 'Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP' unspecified PDB 3MUV 'Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMP' unspecified PDB 3IRW 'The original report of the structure of this riboswitch (wild-type)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MXH _pdbx_database_status.recvd_initial_deposition_date 2010-05-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Strobel, S.A.' 1 'Smith, K.D.' 2 # _citation.id primary _citation.title 'Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .' _citation.journal_abbrev Biochemistry _citation.journal_volume 49 _citation.page_first 7351 _citation.page_last 7359 _citation.year 2010 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20690679 _citation.pdbx_database_id_DOI 10.1021/bi100671e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, K.D.' 1 ? primary 'Lipchock, S.V.' 2 ? primary 'Livingston, A.L.' 3 ? primary 'Shanahan, C.A.' 4 ? primary 'Strobel, S.A.' 5 ? # _cell.entry_id 3MXH _cell.length_a 50.243 _cell.length_b 45.652 _cell.length_c 80.248 _cell.angle_alpha 90.00 _cell.angle_beta 93.74 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MXH _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'U1 small nuclear ribonucleoprotein A' 11340.315 1 ? 'Y31H, Q36R' 'UNP residues 1-98' ? 2 polymer syn 'c-di-GMP riboswitch' 29942.773 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 non-polymer syn ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; 690.411 1 ? ? ? ? 5 water nat water 18.015 169 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U1 snRNP A, U1-A, U1A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMK ; ;MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMK ; P ? 2 polyribonucleotide no yes ;(GTP)GUCACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACCAUUGCACUCCGGUAGGUA GCGGGGUUACCGAUGG ; ;GGUCACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACCAUUGCACUCCGGUAGGUAGCGG GGUUACCGAUGG ; R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 VAL n 1 4 PRO n 1 5 GLU n 1 6 THR n 1 7 ARG n 1 8 PRO n 1 9 ASN n 1 10 HIS n 1 11 THR n 1 12 ILE n 1 13 TYR n 1 14 ILE n 1 15 ASN n 1 16 ASN n 1 17 LEU n 1 18 ASN n 1 19 GLU n 1 20 LYS n 1 21 ILE n 1 22 LYS n 1 23 LYS n 1 24 ASP n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 LYS n 1 29 SER n 1 30 LEU n 1 31 HIS n 1 32 ALA n 1 33 ILE n 1 34 PHE n 1 35 SER n 1 36 ARG n 1 37 PHE n 1 38 GLY n 1 39 GLN n 1 40 ILE n 1 41 LEU n 1 42 ASP n 1 43 ILE n 1 44 LEU n 1 45 VAL n 1 46 SER n 1 47 ARG n 1 48 SER n 1 49 LEU n 1 50 LYS n 1 51 MET n 1 52 ARG n 1 53 GLY n 1 54 GLN n 1 55 ALA n 1 56 PHE n 1 57 VAL n 1 58 ILE n 1 59 PHE n 1 60 LYS n 1 61 GLU n 1 62 VAL n 1 63 SER n 1 64 SER n 1 65 ALA n 1 66 THR n 1 67 ASN n 1 68 ALA n 1 69 LEU n 1 70 ARG n 1 71 SER n 1 72 MET n 1 73 GLN n 1 74 GLY n 1 75 PHE n 1 76 PRO n 1 77 PHE n 1 78 TYR n 1 79 ASP n 1 80 LYS n 1 81 PRO n 1 82 MET n 1 83 ARG n 1 84 ILE n 1 85 GLN n 1 86 TYR n 1 87 ALA n 1 88 LYS n 1 89 THR n 1 90 ASP n 1 91 SER n 1 92 ASP n 1 93 ILE n 1 94 ILE n 1 95 ALA n 1 96 LYS n 1 97 MET n 1 98 LYS n 2 1 GTP n 2 2 G n 2 3 U n 2 4 C n 2 5 A n 2 6 C n 2 7 G n 2 8 C n 2 9 A n 2 10 C n 2 11 A n 2 12 G n 2 13 G n 2 14 G n 2 15 C n 2 16 A n 2 17 A n 2 18 A n 2 19 C n 2 20 C n 2 21 A n 2 22 U n 2 23 U n 2 24 C n 2 25 G n 2 26 A n 2 27 A n 2 28 A n 2 29 G n 2 30 A n 2 31 G n 2 32 U n 2 33 G n 2 34 G n 2 35 G n 2 36 A n 2 37 C n 2 38 G n 2 39 C n 2 40 A n 2 41 A n 2 42 A n 2 43 G n 2 44 C n 2 45 C n 2 46 U n 2 47 C n 2 48 C n 2 49 G n 2 50 G n 2 51 C n 2 52 C n 2 53 U n 2 54 A n 2 55 A n 2 56 A n 2 57 C n 2 58 C n 2 59 A n 2 60 U n 2 61 U n 2 62 G n 2 63 C n 2 64 A n 2 65 C n 2 66 U n 2 67 C n 2 68 C n 2 69 G n 2 70 G n 2 71 U n 2 72 A n 2 73 G n 2 74 G n 2 75 U n 2 76 A n 2 77 G n 2 78 C n 2 79 G n 2 80 G n 2 81 G n 2 82 G n 2 83 U n 2 84 U n 2 85 A n 2 86 C n 2 87 C n 2 88 G n 2 89 A n 2 90 U n 2 91 G n 2 92 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SNRPA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'in vitro transcribed from linear DNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN P09012 1 ;MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK PMRIQYAKTDSDIIAKMK ; 1 ? 2 PDB 3MXH 3MXH 2 ;GGUCACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACCAUUGCACUCCGGUAGGUAGCGG GGUUACCGAUGG ; ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3MXH P 1 ? 98 ? P09012 1 ? 98 ? 1 98 2 2 3MXH R 1 ? 92 ? 3MXH 8 ? 98 ? 8 98 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MXH HIS P 31 ? UNP P09012 TYR 31 'engineered mutation' 31 1 1 3MXH ARG P 36 ? UNP P09012 GLN 36 'engineered mutation' 36 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 C2E non-polymer . ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; 'c-di-GMP; Cyclic diguanosine monophosphate' 'C20 H24 N10 O14 P2' 690.411 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MXH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '22% PEG550mme, 50 mM MES, pH 6.0, 5 mM MgSO4, 300 mM NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-26 _diffrn_detector.details 'VERTICALLY FOCUSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 3MXH _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 80 _reflns.d_resolution_high 2.3 _reflns.number_obs 15201 _reflns.number_all 15607 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.B_iso_Wilson_estimate 62.4 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.4 _reflns_shell.percent_possible_all 89.9 _reflns_shell.Rmerge_I_obs 0.528 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1019 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3MXH _refine.ls_number_reflns_obs 15201 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.34 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 97.69 _refine.ls_R_factor_obs 0.20342 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20157 _refine.ls_R_factor_R_free 0.23913 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 816 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 70.319 _refine.aniso_B[1][1] 2.92 _refine.aniso_B[2][2] -0.50 _refine.aniso_B[3][3] -1.98 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 3.33 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 3IRW' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.247 _refine.overall_SU_ML 0.204 _refine.overall_SU_B 17.433 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 712 _refine_hist.pdbx_number_atoms_nucleic_acid 1984 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 2916 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 30.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 3020 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.936 2.777 ? 4567 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.313 5.000 ? 86 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.972 23.235 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.270 15.000 ? 144 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.356 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.046 0.200 ? 573 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1519 'X-RAY DIFFRACTION' ? r_mcbond_it 0.918 5.000 ? 434 'X-RAY DIFFRACTION' ? r_mcangle_it 1.576 10.000 ? 703 'X-RAY DIFFRACTION' ? r_scbond_it 1.382 5.000 ? 2586 'X-RAY DIFFRACTION' ? r_scangle_it 2.122 10.000 ? 3863 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 1019 _refine_ls_shell.R_factor_R_work 0.465 _refine_ls_shell.percent_reflns_obs 90.66 _refine_ls_shell.R_factor_R_free 0.413 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1019 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MXH _struct.title 'Native structure of a c-di-GMP riboswitch from V. cholerae' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MXH _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'RNA, riboswitch, c-di-GMP, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 22 ? SER A 35 ? LYS P 22 SER P 35 1 ? 14 HELX_P HELX_P2 2 GLU A 61 ? MET A 72 ? GLU P 61 MET P 72 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? R GTP 8 R G 9 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? P MG 99 P HOH 109 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? P MG 99 P HOH 110 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? P MG 99 P HOH 111 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? P MG 99 P HOH 112 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? P MG 99 P HOH 113 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? P MG 99 P HOH 114 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 2 R HOH 734 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 2 R HOH 735 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc9 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 2 R HOH 736 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc10 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 2 R HOH 737 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc11 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 2 R HOH 738 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc12 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 2 R HOH 739 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc13 metalc ? ? G MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 4 R HOH 100 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc14 metalc ? ? G MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 4 R HOH 161 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc15 metalc ? ? H MG . MG ? ? ? 1_555 B G 35 O6 ? ? R MG 5 R G 42 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc16 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 5 R HOH 740 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc17 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 5 R HOH 741 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc18 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 5 R HOH 742 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc19 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 5 R HOH 743 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc20 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 5 R HOH 744 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc21 metalc ? ? B A 41 OP2 ? ? ? 1_555 E MG . MG ? ? R A 48 R MG 670 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 670 R HOH 729 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 670 R HOH 730 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 670 R HOH 731 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc25 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 670 R HOH 732 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc26 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? R MG 670 R HOH 733 1_555 ? ? ? ? ? ? ? 2.179 ? ? hydrog1 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 92 N1 ? ? R C 11 R G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 92 O6 ? ? R C 11 R G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 92 N2 ? ? R C 11 R G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B A 5 N1 ? ? ? 1_555 B G 91 N1 ? ? R A 12 R G 97 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog5 hydrog ? ? B A 5 N6 ? ? ? 1_555 B G 91 O6 ? ? R A 12 R G 97 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog6 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 88 N1 ? ? R C 13 R G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 88 O6 ? ? R C 13 R G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 88 N2 ? ? R C 13 R G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 7 N2 ? ? ? 1_555 B A 9 N7 ? ? R G 14 R A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog10 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 87 N3 ? ? R G 14 R C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 87 O2 ? ? R G 14 R C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 87 N4 ? ? R G 14 R C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 9 N6 ? ? ? 1_555 B C 87 O2 ? ? R A 16 R C 93 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog14 hydrog ? ? B C 10 N4 ? ? ? 1_555 B C 87 O2 ? ? R C 17 R C 93 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog15 hydrog ? ? B G 12 O6 ? ? ? 1_555 B A 40 N6 ? ? R G 19 R A 47 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog16 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 39 N3 ? ? R G 21 R C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 14 N2 ? ? ? 1_555 B C 39 O2 ? ? R G 21 R C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 14 O6 ? ? ? 1_555 B C 39 N4 ? ? R G 21 R C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 38 N1 ? ? R C 22 R G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 38 O6 ? ? R C 22 R G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 38 N2 ? ? R C 22 R G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B A 16 N3 ? ? ? 1_555 B C 37 N4 ? ? R A 23 R C 44 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog23 hydrog ? ? B A 18 N6 ? ? ? 1_555 B G 35 N3 ? ? R A 25 R G 42 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? B A 18 N7 ? ? ? 1_555 B G 35 N2 ? ? R A 25 R G 42 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 34 N1 ? ? R C 26 R G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 34 O6 ? ? R C 26 R G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 34 N2 ? ? R C 26 R G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 33 N1 ? ? R C 27 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 33 O6 ? ? R C 27 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 33 N2 ? ? R C 27 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B A 21 N1 ? ? ? 1_555 B U 32 N3 ? ? R A 28 R U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 32 O4 ? ? R A 28 R U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B U 22 N3 ? ? ? 1_555 B G 31 O6 ? ? R U 29 R G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? B U 22 O2 ? ? ? 1_555 B G 31 N1 ? ? R U 29 R G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? B U 23 N3 ? ? ? 1_555 B A 30 N1 ? ? R U 30 R A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 23 O4 ? ? ? 1_555 B A 30 N6 ? ? R U 30 R A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 29 N1 ? ? R C 31 R G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 29 O6 ? ? R C 31 R G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 29 N2 ? ? R C 31 R G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 25 N2 ? ? ? 1_555 B A 28 N7 ? ? R G 32 R A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? B A 28 N3 ? ? ? 1_555 B G 73 N2 ? ? R A 35 R G 79 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog42 hydrog ? ? B C 37 N3 ? ? ? 1_555 B G 77 N1 ? ? R C 44 R G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 37 N4 ? ? ? 1_555 B G 77 O6 ? ? R C 44 R G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 37 O2 ? ? ? 1_555 B G 77 N2 ? ? R C 44 R G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 38 N2 ? ? ? 1_555 B A 42 N3 ? ? R G 45 R A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? B A 41 N6 ? ? ? 1_555 B U 84 O2 ? ? R A 48 R U 90 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? B A 41 N7 ? ? ? 1_555 B U 84 N3 ? ? R A 48 R U 90 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog48 hydrog ? ? B G 43 N1 ? ? ? 1_555 B U 83 O2 ? ? R G 50 R U 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? B G 43 O6 ? ? ? 1_555 B U 83 N3 ? ? R G 50 R U 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? B C 44 N3 ? ? ? 1_555 B G 82 N1 ? ? R C 51 R G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 44 N4 ? ? ? 1_555 B G 82 O6 ? ? R C 51 R G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 44 O2 ? ? ? 1_555 B G 82 N2 ? ? R C 51 R G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 45 N3 ? ? ? 1_555 B G 81 N1 ? ? R C 52 R G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 45 N4 ? ? ? 1_555 B G 81 O6 ? ? R C 52 R G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 45 O2 ? ? ? 1_555 B G 81 N2 ? ? R C 52 R G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B U 46 O2 ? ? ? 1_555 B C 48 N4 ? ? R U 53 R C 55 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog57 hydrog ? ? B C 47 N4 ? ? ? 1_555 B A 76 N1 ? ? R C 54 R A 82 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog58 hydrog ? ? B C 47 N3 ? ? ? 1_555 B G 80 N1 ? ? R C 54 R G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 47 N4 ? ? ? 1_555 B G 80 O6 ? ? R C 54 R G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 47 O2 ? ? ? 1_555 B G 80 N2 ? ? R C 54 R G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 48 N3 ? ? ? 1_555 B G 79 N1 ? ? R C 55 R G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 48 N4 ? ? ? 1_555 B G 79 O6 ? ? R C 55 R G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 48 O2 ? ? ? 1_555 B G 79 N2 ? ? R C 55 R G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 49 N1 ? ? ? 1_555 B C 78 N3 ? ? R G 56 R C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 49 N2 ? ? ? 1_555 B C 78 O2 ? ? R G 56 R C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 49 O6 ? ? ? 1_555 B C 78 N4 ? ? R G 56 R C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 50 N1 ? ? ? 1_555 B U 75 O2 ? ? R G 57 R U 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? B G 50 O6 ? ? ? 1_555 B U 75 N3 ? ? R G 57 R U 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? B C 51 N3 ? ? ? 1_555 B G 74 N1 ? ? R C 58 R G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B C 51 N4 ? ? ? 1_555 B G 74 O6 ? ? R C 58 R G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B C 51 O2 ? ? ? 1_555 B G 74 N2 ? ? R C 58 R G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B C 52 N3 ? ? ? 1_555 B G 73 N1 ? ? R C 59 R G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 52 N4 ? ? ? 1_555 B G 73 O6 ? ? R C 59 R G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 52 O2 ? ? ? 1_555 B G 73 N2 ? ? R C 59 R G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B U 53 N3 ? ? ? 1_555 B A 72 N1 ? ? R U 60 R A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B U 53 O4 ? ? ? 1_555 B A 72 N6 ? ? R U 60 R A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B A 54 N1 ? ? ? 1_555 B U 71 N3 ? ? R A 61 R U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B A 54 N6 ? ? ? 1_555 B U 71 O4 ? ? R A 61 R U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B A 55 N6 ? ? ? 1_555 B A 72 N3 ? ? R A 62 R A 78 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog80 hydrog ? ? B C 57 O2 ? ? ? 1_555 B G 70 N2 ? ? R C 64 R G 76 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog81 hydrog ? ? B C 58 N3 ? ? ? 1_555 B G 69 N1 ? ? R C 65 R G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 58 N4 ? ? ? 1_555 B G 69 O6 ? ? R C 65 R G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 58 O2 ? ? ? 1_555 B G 69 N2 ? ? R C 65 R G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 88 N2 ? ? ? 1_555 B A 89 N1 ? ? R G 94 R A 95 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 40 ? LEU A 44 ? ILE P 40 LEU P 44 A 2 ALA A 55 ? PHE A 59 ? ALA P 55 PHE P 59 A 3 THR A 11 ? ASN A 15 ? THR P 11 ASN P 15 A 4 ARG A 83 ? TYR A 86 ? ARG P 83 TYR P 86 B 1 PRO A 76 ? PHE A 77 ? PRO P 76 PHE P 77 B 2 LYS A 80 ? PRO A 81 ? LYS P 80 PRO P 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 41 ? N LEU P 41 O ILE A 58 ? O ILE P 58 A 2 3 O ALA A 55 ? O ALA P 55 N ILE A 14 ? N ILE P 14 A 3 4 N TYR A 13 ? N TYR P 13 O GLN A 85 ? O GLN P 85 B 1 2 N PHE A 77 ? N PHE P 77 O LYS A 80 ? O LYS P 80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software P MG 99 ? 7 'BINDING SITE FOR RESIDUE MG P 99' AC2 Software R C2E 1 ? 23 'BINDING SITE FOR RESIDUE C2E R 1' AC3 Software R MG 670 ? 7 'BINDING SITE FOR RESIDUE MG R 670' AC4 Software R MG 2 ? 7 'BINDING SITE FOR RESIDUE MG R 2' AC5 Software R MG 4 ? 4 'BINDING SITE FOR RESIDUE MG R 4' AC6 Software R MG 5 ? 6 'BINDING SITE FOR RESIDUE MG R 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 70 ? ARG P 70 . ? 1_555 ? 2 AC1 7 HOH I . ? HOH P 109 . ? 1_555 ? 3 AC1 7 HOH I . ? HOH P 110 . ? 1_555 ? 4 AC1 7 HOH I . ? HOH P 111 . ? 1_555 ? 5 AC1 7 HOH I . ? HOH P 112 . ? 1_555 ? 6 AC1 7 HOH I . ? HOH P 113 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH P 114 . ? 1_555 ? 8 AC2 23 MG F . ? MG R 2 . ? 1_555 ? 9 AC2 23 G B 7 ? G R 14 . ? 1_555 ? 10 AC2 23 A B 9 ? A R 16 . ? 1_555 ? 11 AC2 23 C B 10 ? C R 17 . ? 1_555 ? 12 AC2 23 A B 11 ? A R 18 . ? 1_555 ? 13 AC2 23 G B 13 ? G R 20 . ? 1_555 ? 14 AC2 23 G B 14 ? G R 21 . ? 1_555 ? 15 AC2 23 C B 39 ? C R 46 . ? 1_555 ? 16 AC2 23 A B 40 ? A R 47 . ? 1_555 ? 17 AC2 23 A B 41 ? A R 48 . ? 1_555 ? 18 AC2 23 A B 42 ? A R 49 . ? 1_555 ? 19 AC2 23 C B 86 ? C R 92 . ? 1_555 ? 20 AC2 23 C B 87 ? C R 93 . ? 1_555 ? 21 AC2 23 HOH J . ? HOH R 140 . ? 1_555 ? 22 AC2 23 HOH J . ? HOH R 671 . ? 1_555 ? 23 AC2 23 HOH J . ? HOH R 673 . ? 1_555 ? 24 AC2 23 HOH J . ? HOH R 676 . ? 1_555 ? 25 AC2 23 HOH J . ? HOH R 687 . ? 1_555 ? 26 AC2 23 HOH J . ? HOH R 717 . ? 1_555 ? 27 AC2 23 HOH J . ? HOH R 732 . ? 1_555 ? 28 AC2 23 HOH J . ? HOH R 734 . ? 1_555 ? 29 AC2 23 HOH J . ? HOH R 736 . ? 1_555 ? 30 AC2 23 HOH J . ? HOH R 738 . ? 1_555 ? 31 AC3 7 A B 40 ? A R 47 . ? 1_555 ? 32 AC3 7 A B 41 ? A R 48 . ? 1_555 ? 33 AC3 7 HOH J . ? HOH R 729 . ? 1_555 ? 34 AC3 7 HOH J . ? HOH R 730 . ? 1_555 ? 35 AC3 7 HOH J . ? HOH R 731 . ? 1_555 ? 36 AC3 7 HOH J . ? HOH R 732 . ? 1_555 ? 37 AC3 7 HOH J . ? HOH R 733 . ? 1_555 ? 38 AC4 7 C2E D . ? C2E R 1 . ? 1_555 ? 39 AC4 7 HOH J . ? HOH R 734 . ? 1_555 ? 40 AC4 7 HOH J . ? HOH R 735 . ? 1_555 ? 41 AC4 7 HOH J . ? HOH R 736 . ? 1_555 ? 42 AC4 7 HOH J . ? HOH R 737 . ? 1_555 ? 43 AC4 7 HOH J . ? HOH R 738 . ? 1_555 ? 44 AC4 7 HOH J . ? HOH R 739 . ? 1_555 ? 45 AC5 4 HOH J . ? HOH R 70 . ? 1_555 ? 46 AC5 4 U B 75 ? U R 81 . ? 1_555 ? 47 AC5 4 HOH J . ? HOH R 100 . ? 1_555 ? 48 AC5 4 HOH J . ? HOH R 161 . ? 1_555 ? 49 AC6 6 G B 35 ? G R 42 . ? 1_555 ? 50 AC6 6 HOH J . ? HOH R 740 . ? 1_555 ? 51 AC6 6 HOH J . ? HOH R 741 . ? 1_555 ? 52 AC6 6 HOH J . ? HOH R 742 . ? 1_555 ? 53 AC6 6 HOH J . ? HOH R 743 . ? 1_555 ? 54 AC6 6 HOH J . ? HOH R 744 . ? 1_555 ? # _database_PDB_matrix.entry_id 3MXH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MXH _atom_sites.fract_transf_matrix[1][1] 0.019903 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001300 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021905 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012488 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? P . n A 1 2 ALA 2 2 ? ? ? P . n A 1 3 VAL 3 3 ? ? ? P . n A 1 4 PRO 4 4 ? ? ? P . n A 1 5 GLU 5 5 ? ? ? P . n A 1 6 THR 6 6 ? ? ? P . n A 1 7 ARG 7 7 7 ARG ARG P . n A 1 8 PRO 8 8 8 PRO PRO P . n A 1 9 ASN 9 9 9 ASN ASN P . n A 1 10 HIS 10 10 10 HIS HIS P . n A 1 11 THR 11 11 11 THR THR P . n A 1 12 ILE 12 12 12 ILE ILE P . n A 1 13 TYR 13 13 13 TYR TYR P . n A 1 14 ILE 14 14 14 ILE ILE P . n A 1 15 ASN 15 15 15 ASN ASN P . n A 1 16 ASN 16 16 16 ASN ASN P . n A 1 17 LEU 17 17 17 LEU LEU P . n A 1 18 ASN 18 18 18 ASN ASN P . n A 1 19 GLU 19 19 19 GLU GLU P . n A 1 20 LYS 20 20 20 LYS LYS P . n A 1 21 ILE 21 21 21 ILE ILE P . n A 1 22 LYS 22 22 22 LYS LYS P . n A 1 23 LYS 23 23 23 LYS LYS P . n A 1 24 ASP 24 24 24 ASP ASP P . n A 1 25 GLU 25 25 25 GLU GLU P . n A 1 26 LEU 26 26 26 LEU LEU P . n A 1 27 LYS 27 27 27 LYS LYS P . n A 1 28 LYS 28 28 28 LYS LYS P . n A 1 29 SER 29 29 29 SER SER P . n A 1 30 LEU 30 30 30 LEU LEU P . n A 1 31 HIS 31 31 31 HIS HIS P . n A 1 32 ALA 32 32 32 ALA ALA P . n A 1 33 ILE 33 33 33 ILE ILE P . n A 1 34 PHE 34 34 34 PHE PHE P . n A 1 35 SER 35 35 35 SER SER P . n A 1 36 ARG 36 36 36 ARG ARG P . n A 1 37 PHE 37 37 37 PHE PHE P . n A 1 38 GLY 38 38 38 GLY GLY P . n A 1 39 GLN 39 39 39 GLN GLN P . n A 1 40 ILE 40 40 40 ILE ILE P . n A 1 41 LEU 41 41 41 LEU LEU P . n A 1 42 ASP 42 42 42 ASP ASP P . n A 1 43 ILE 43 43 43 ILE ILE P . n A 1 44 LEU 44 44 44 LEU LEU P . n A 1 45 VAL 45 45 45 VAL VAL P . n A 1 46 SER 46 46 46 SER SER P . n A 1 47 ARG 47 47 47 ARG ARG P . n A 1 48 SER 48 48 48 SER SER P . n A 1 49 LEU 49 49 49 LEU LEU P . n A 1 50 LYS 50 50 50 LYS LYS P . n A 1 51 MET 51 51 51 MET MET P . n A 1 52 ARG 52 52 52 ARG ARG P . n A 1 53 GLY 53 53 53 GLY GLY P . n A 1 54 GLN 54 54 54 GLN GLN P . n A 1 55 ALA 55 55 55 ALA ALA P . n A 1 56 PHE 56 56 56 PHE PHE P . n A 1 57 VAL 57 57 57 VAL VAL P . n A 1 58 ILE 58 58 58 ILE ILE P . n A 1 59 PHE 59 59 59 PHE PHE P . n A 1 60 LYS 60 60 60 LYS LYS P . n A 1 61 GLU 61 61 61 GLU GLU P . n A 1 62 VAL 62 62 62 VAL VAL P . n A 1 63 SER 63 63 63 SER SER P . n A 1 64 SER 64 64 64 SER SER P . n A 1 65 ALA 65 65 65 ALA ALA P . n A 1 66 THR 66 66 66 THR THR P . n A 1 67 ASN 67 67 67 ASN ASN P . n A 1 68 ALA 68 68 68 ALA ALA P . n A 1 69 LEU 69 69 69 LEU LEU P . n A 1 70 ARG 70 70 70 ARG ARG P . n A 1 71 SER 71 71 71 SER SER P . n A 1 72 MET 72 72 72 MET MET P . n A 1 73 GLN 73 73 73 GLN GLN P . n A 1 74 GLY 74 74 74 GLY GLY P . n A 1 75 PHE 75 75 75 PHE PHE P . n A 1 76 PRO 76 76 76 PRO PRO P . n A 1 77 PHE 77 77 77 PHE PHE P . n A 1 78 TYR 78 78 78 TYR TYR P . n A 1 79 ASP 79 79 79 ASP ASP P . n A 1 80 LYS 80 80 80 LYS LYS P . n A 1 81 PRO 81 81 81 PRO PRO P . n A 1 82 MET 82 82 82 MET MET P . n A 1 83 ARG 83 83 83 ARG ARG P . n A 1 84 ILE 84 84 84 ILE ILE P . n A 1 85 GLN 85 85 85 GLN GLN P . n A 1 86 TYR 86 86 86 TYR TYR P . n A 1 87 ALA 87 87 87 ALA ALA P . n A 1 88 LYS 88 88 88 LYS LYS P . n A 1 89 THR 89 89 89 THR THR P . n A 1 90 ASP 90 90 90 ASP ASP P . n A 1 91 SER 91 91 91 SER SER P . n A 1 92 ASP 92 92 92 ASP ASP P . n A 1 93 ILE 93 93 93 ILE ILE P . n A 1 94 ILE 94 94 ? ? ? P . n A 1 95 ALA 95 95 ? ? ? P . n A 1 96 LYS 96 96 ? ? ? P . n A 1 97 MET 97 97 ? ? ? P . n A 1 98 LYS 98 98 ? ? ? P . n B 2 1 GTP 1 8 8 GTP GTP R . n B 2 2 G 2 9 9 G G R . n B 2 3 U 3 10 10 U U R . n B 2 4 C 4 11 11 C C R . n B 2 5 A 5 12 12 A A R . n B 2 6 C 6 13 13 C C R . n B 2 7 G 7 14 14 G G R . n B 2 8 C 8 15 15 C C R . n B 2 9 A 9 16 16 A A R . n B 2 10 C 10 17 17 C C R . n B 2 11 A 11 18 18 A A R . n B 2 12 G 12 19 19 G G R . n B 2 13 G 13 20 20 G G R . n B 2 14 G 14 21 21 G G R . n B 2 15 C 15 22 22 C C R . n B 2 16 A 16 23 23 A A R . n B 2 17 A 17 24 24 A A R . n B 2 18 A 18 25 25 A A R . n B 2 19 C 19 26 26 C C R . n B 2 20 C 20 27 27 C C R . n B 2 21 A 21 28 28 A A R . n B 2 22 U 22 29 29 U U R . n B 2 23 U 23 30 30 U U R . n B 2 24 C 24 31 31 C C R . n B 2 25 G 25 32 32 G G R . n B 2 26 A 26 33 33 A A R . n B 2 27 A 27 34 34 A A R . n B 2 28 A 28 35 35 A A R . n B 2 29 G 29 36 36 G G R . n B 2 30 A 30 37 37 A A R . n B 2 31 G 31 38 38 G G R . n B 2 32 U 32 39 39 U U R . n B 2 33 G 33 40 40 G G R . n B 2 34 G 34 41 41 G G R . n B 2 35 G 35 42 42 G G R . n B 2 36 A 36 43 43 A A R . n B 2 37 C 37 44 44 C C R . n B 2 38 G 38 45 45 G G R . n B 2 39 C 39 46 46 C C R . n B 2 40 A 40 47 47 A A R . n B 2 41 A 41 48 48 A A R . n B 2 42 A 42 49 49 A A R . n B 2 43 G 43 50 50 G G R . n B 2 44 C 44 51 51 C C R . n B 2 45 C 45 52 52 C C R . n B 2 46 U 46 53 53 U U R . n B 2 47 C 47 54 54 C C R . n B 2 48 C 48 55 55 C C R . n B 2 49 G 49 56 56 G G R . n B 2 50 G 50 57 57 G G R . n B 2 51 C 51 58 58 C C R . n B 2 52 C 52 59 59 C C R . n B 2 53 U 53 60 60 U U R . n B 2 54 A 54 61 61 A A R . n B 2 55 A 55 62 62 A A R . n B 2 56 A 56 63 63 A A R . n B 2 57 C 57 64 64 C C R . n B 2 58 C 58 65 65 C C R . n B 2 59 A 59 660 660 A A R . n B 2 60 U 60 661 661 U U R . n B 2 61 U 61 662 662 U U R . n B 2 62 G 62 663 663 G G R . n B 2 63 C 63 664 664 C C R . n B 2 64 A 64 665 665 A A R . n B 2 65 C 65 666 666 C C R . n B 2 66 U 66 667 667 U U R . n B 2 67 C 67 668 668 C C R . n B 2 68 C 68 669 669 C C R . n B 2 69 G 69 75 75 G G R . n B 2 70 G 70 76 76 G G R . n B 2 71 U 71 77 77 U U R . n B 2 72 A 72 78 78 A A R . n B 2 73 G 73 79 79 G G R . n B 2 74 G 74 80 80 G G R . n B 2 75 U 75 81 81 U U R . n B 2 76 A 76 82 82 A A R . n B 2 77 G 77 83 83 G G R . n B 2 78 C 78 84 84 C C R . n B 2 79 G 79 85 85 G G R . n B 2 80 G 80 86 86 G G R . n B 2 81 G 81 87 87 G G R . n B 2 82 G 82 88 88 G G R . n B 2 83 U 83 89 89 U U R . n B 2 84 U 84 90 90 U U R . n B 2 85 A 85 91 91 A A R . n B 2 86 C 86 92 92 C C R . n B 2 87 C 87 93 93 C C R . n B 2 88 G 88 94 94 G G R . n B 2 89 A 89 95 95 A A R . n B 2 90 U 90 96 96 U U R . n B 2 91 G 91 97 97 G G R . n B 2 92 G 92 98 98 G G R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 99 3 MG MO6 P . D 4 C2E 1 1 1 C2E C2E R . E 3 MG 1 670 1 MG MO6 R . F 3 MG 1 2 2 MG MO6 R . G 3 MG 1 4 4 MG MG R . H 3 MG 1 5 5 MG MO6 R . I 5 HOH 1 100 10 HOH HOH P . I 5 HOH 2 101 15 HOH HOH P . I 5 HOH 3 102 31 HOH HOH P . I 5 HOH 4 103 36 HOH HOH P . I 5 HOH 5 104 49 HOH HOH P . I 5 HOH 6 105 52 HOH HOH P . I 5 HOH 7 106 67 HOH HOH P . I 5 HOH 8 107 79 HOH HOH P . I 5 HOH 9 108 86 HOH HOH P . I 5 HOH 10 109 3 HOH MO6 P . I 5 HOH 11 110 3 HOH MO6 P . I 5 HOH 12 111 3 HOH MO6 P . I 5 HOH 13 112 3 HOH MO6 P . I 5 HOH 14 113 3 HOH MO6 P . I 5 HOH 15 114 3 HOH MO6 P . I 5 HOH 16 117 117 HOH HOH P . I 5 HOH 17 137 137 HOH HOH P . I 5 HOH 18 146 146 HOH HOH P . I 5 HOH 19 165 165 HOH HOH P . I 5 HOH 20 176 176 HOH HOH P . J 5 HOH 1 66 66 HOH HOH R . J 5 HOH 2 68 68 HOH HOH R . J 5 HOH 3 70 70 HOH HOH R . J 5 HOH 4 71 71 HOH HOH R . J 5 HOH 5 72 72 HOH HOH R . J 5 HOH 6 73 73 HOH HOH R . J 5 HOH 7 74 74 HOH HOH R . J 5 HOH 8 99 99 HOH HOH R . J 5 HOH 9 100 100 HOH HOH R . J 5 HOH 10 101 101 HOH HOH R . J 5 HOH 11 102 102 HOH HOH R . J 5 HOH 12 103 103 HOH HOH R . J 5 HOH 13 104 104 HOH HOH R . J 5 HOH 14 105 105 HOH HOH R . J 5 HOH 15 106 106 HOH HOH R . J 5 HOH 16 107 107 HOH HOH R . J 5 HOH 17 108 108 HOH HOH R . J 5 HOH 18 109 109 HOH HOH R . J 5 HOH 19 110 110 HOH HOH R . J 5 HOH 20 111 111 HOH HOH R . J 5 HOH 21 112 112 HOH HOH R . J 5 HOH 22 113 113 HOH HOH R . J 5 HOH 23 114 114 HOH HOH R . J 5 HOH 24 115 115 HOH HOH R . J 5 HOH 25 116 116 HOH HOH R . J 5 HOH 26 118 118 HOH HOH R . J 5 HOH 27 120 120 HOH HOH R . J 5 HOH 28 121 121 HOH HOH R . J 5 HOH 29 122 122 HOH HOH R . J 5 HOH 30 123 123 HOH HOH R . J 5 HOH 31 125 125 HOH HOH R . J 5 HOH 32 126 126 HOH HOH R . J 5 HOH 33 127 127 HOH HOH R . J 5 HOH 34 128 128 HOH HOH R . J 5 HOH 35 129 129 HOH HOH R . J 5 HOH 36 130 130 HOH HOH R . J 5 HOH 37 131 131 HOH HOH R . J 5 HOH 38 132 132 HOH HOH R . J 5 HOH 39 133 133 HOH HOH R . J 5 HOH 40 134 134 HOH HOH R . J 5 HOH 41 135 135 HOH HOH R . J 5 HOH 42 136 136 HOH HOH R . J 5 HOH 43 140 140 HOH HOH R . J 5 HOH 44 141 141 HOH HOH R . J 5 HOH 45 142 142 HOH HOH R . J 5 HOH 46 143 143 HOH HOH R . J 5 HOH 47 144 144 HOH HOH R . J 5 HOH 48 145 145 HOH HOH R . J 5 HOH 49 147 147 HOH HOH R . J 5 HOH 50 148 148 HOH HOH R . J 5 HOH 51 149 149 HOH HOH R . J 5 HOH 52 150 150 HOH HOH R . J 5 HOH 53 151 151 HOH HOH R . J 5 HOH 54 153 153 HOH HOH R . J 5 HOH 55 154 154 HOH HOH R . J 5 HOH 56 155 155 HOH HOH R . J 5 HOH 57 156 156 HOH HOH R . J 5 HOH 58 157 157 HOH HOH R . J 5 HOH 59 158 158 HOH HOH R . J 5 HOH 60 159 159 HOH HOH R . J 5 HOH 61 160 160 HOH HOH R . J 5 HOH 62 161 161 HOH HOH R . J 5 HOH 63 162 162 HOH HOH R . J 5 HOH 64 163 163 HOH HOH R . J 5 HOH 65 164 164 HOH HOH R . J 5 HOH 66 166 166 HOH HOH R . J 5 HOH 67 167 167 HOH HOH R . J 5 HOH 68 168 168 HOH HOH R . J 5 HOH 69 169 169 HOH HOH R . J 5 HOH 70 170 170 HOH HOH R . J 5 HOH 71 171 171 HOH HOH R . J 5 HOH 72 172 172 HOH HOH R . J 5 HOH 73 173 173 HOH HOH R . J 5 HOH 74 174 174 HOH HOH R . J 5 HOH 75 175 175 HOH HOH R . J 5 HOH 76 671 1 HOH HOH R . J 5 HOH 77 672 2 HOH HOH R . J 5 HOH 78 673 8 HOH HOH R . J 5 HOH 79 674 9 HOH HOH R . J 5 HOH 80 675 11 HOH HOH R . J 5 HOH 81 676 12 HOH HOH R . J 5 HOH 82 677 13 HOH HOH R . J 5 HOH 83 678 14 HOH HOH R . J 5 HOH 84 679 18 HOH HOH R . J 5 HOH 85 680 20 HOH HOH R . J 5 HOH 86 681 21 HOH HOH R . J 5 HOH 87 682 22 HOH HOH R . J 5 HOH 88 683 23 HOH HOH R . J 5 HOH 89 684 24 HOH HOH R . J 5 HOH 90 685 26 HOH HOH R . J 5 HOH 91 686 27 HOH HOH R . J 5 HOH 92 687 29 HOH HOH R . J 5 HOH 93 688 34 HOH HOH R . J 5 HOH 94 689 37 HOH HOH R . J 5 HOH 95 690 38 HOH HOH R . J 5 HOH 96 691 39 HOH HOH R . J 5 HOH 97 692 40 HOH HOH R . J 5 HOH 98 693 41 HOH HOH R . J 5 HOH 99 694 42 HOH HOH R . J 5 HOH 100 695 43 HOH HOH R . J 5 HOH 101 696 45 HOH HOH R . J 5 HOH 102 697 46 HOH HOH R . J 5 HOH 103 698 47 HOH HOH R . J 5 HOH 104 699 48 HOH HOH R . J 5 HOH 105 700 50 HOH HOH R . J 5 HOH 106 701 51 HOH HOH R . J 5 HOH 107 702 53 HOH HOH R . J 5 HOH 108 703 54 HOH HOH R . J 5 HOH 109 704 55 HOH HOH R . J 5 HOH 110 705 56 HOH HOH R . J 5 HOH 111 706 57 HOH HOH R . J 5 HOH 112 707 59 HOH HOH R . J 5 HOH 113 708 60 HOH HOH R . J 5 HOH 114 709 61 HOH HOH R . J 5 HOH 115 710 62 HOH HOH R . J 5 HOH 116 711 63 HOH HOH R . J 5 HOH 117 712 64 HOH HOH R . J 5 HOH 118 713 65 HOH HOH R . J 5 HOH 119 714 75 HOH HOH R . J 5 HOH 120 715 76 HOH HOH R . J 5 HOH 121 716 77 HOH HOH R . J 5 HOH 122 717 80 HOH HOH R . J 5 HOH 123 718 81 HOH HOH R . J 5 HOH 124 719 82 HOH HOH R . J 5 HOH 125 720 83 HOH HOH R . J 5 HOH 126 721 85 HOH HOH R . J 5 HOH 127 722 87 HOH HOH R . J 5 HOH 128 723 88 HOH HOH R . J 5 HOH 129 724 91 HOH HOH R . J 5 HOH 130 725 92 HOH HOH R . J 5 HOH 131 726 93 HOH HOH R . J 5 HOH 132 727 94 HOH HOH R . J 5 HOH 133 728 96 HOH HOH R . J 5 HOH 134 729 1 HOH MO6 R . J 5 HOH 135 730 1 HOH MO6 R . J 5 HOH 136 731 1 HOH MO6 R . J 5 HOH 137 732 1 HOH MO6 R . J 5 HOH 138 733 1 HOH MO6 R . J 5 HOH 139 734 2 HOH MO6 R . J 5 HOH 140 735 2 HOH MO6 R . J 5 HOH 141 736 2 HOH MO6 R . J 5 HOH 142 737 2 HOH MO6 R . J 5 HOH 143 738 2 HOH MO6 R . J 5 HOH 144 739 2 HOH MO6 R . J 5 HOH 145 740 5 HOH MO6 R . J 5 HOH 146 741 5 HOH MO6 R . J 5 HOH 147 742 5 HOH MO6 R . J 5 HOH 148 743 5 HOH MO6 R . J 5 HOH 149 744 5 HOH MO6 R . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id GTP _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id R _pdbx_struct_mod_residue.auth_comp_id GTP _pdbx_struct_mod_residue.auth_seq_id 8 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-5'-TRIPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3810 ? 1 MORE -40 ? 1 'SSA (A^2)' 19250 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? I HOH . ? P HOH 109 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 110 ? 1_555 179.9 ? 2 O ? I HOH . ? P HOH 109 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 111 ? 1_555 89.9 ? 3 O ? I HOH . ? P HOH 110 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 111 ? 1_555 89.9 ? 4 O ? I HOH . ? P HOH 109 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 112 ? 1_555 90.0 ? 5 O ? I HOH . ? P HOH 110 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 112 ? 1_555 90.1 ? 6 O ? I HOH . ? P HOH 111 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 112 ? 1_555 179.8 ? 7 O ? I HOH . ? P HOH 109 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 113 ? 1_555 90.0 ? 8 O ? I HOH . ? P HOH 110 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 113 ? 1_555 90.0 ? 9 O ? I HOH . ? P HOH 111 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 113 ? 1_555 90.0 ? 10 O ? I HOH . ? P HOH 112 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 113 ? 1_555 90.2 ? 11 O ? I HOH . ? P HOH 109 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 114 ? 1_555 90.1 ? 12 O ? I HOH . ? P HOH 110 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 114 ? 1_555 89.9 ? 13 O ? I HOH . ? P HOH 111 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 114 ? 1_555 90.1 ? 14 O ? I HOH . ? P HOH 112 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 114 ? 1_555 89.7 ? 15 O ? I HOH . ? P HOH 113 ? 1_555 MG ? C MG . ? P MG 99 ? 1_555 O ? I HOH . ? P HOH 114 ? 1_555 179.9 ? 16 O ? J HOH . ? R HOH 734 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 735 ? 1_555 179.7 ? 17 O ? J HOH . ? R HOH 734 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 736 ? 1_555 89.9 ? 18 O ? J HOH . ? R HOH 735 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 736 ? 1_555 90.4 ? 19 O ? J HOH . ? R HOH 734 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 737 ? 1_555 90.0 ? 20 O ? J HOH . ? R HOH 735 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 737 ? 1_555 89.7 ? 21 O ? J HOH . ? R HOH 736 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 737 ? 1_555 179.7 ? 22 O ? J HOH . ? R HOH 734 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 738 ? 1_555 89.9 ? 23 O ? J HOH . ? R HOH 735 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 738 ? 1_555 90.1 ? 24 O ? J HOH . ? R HOH 736 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 738 ? 1_555 90.1 ? 25 O ? J HOH . ? R HOH 737 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 738 ? 1_555 90.1 ? 26 O ? J HOH . ? R HOH 734 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 739 ? 1_555 90.5 ? 27 O ? J HOH . ? R HOH 735 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 739 ? 1_555 89.6 ? 28 O ? J HOH . ? R HOH 736 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 739 ? 1_555 89.7 ? 29 O ? J HOH . ? R HOH 737 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 739 ? 1_555 90.0 ? 30 O ? J HOH . ? R HOH 738 ? 1_555 MG ? F MG . ? R MG 2 ? 1_555 O ? J HOH . ? R HOH 739 ? 1_555 179.6 ? 31 O ? J HOH . ? R HOH 100 ? 1_555 MG ? G MG . ? R MG 4 ? 1_555 O ? J HOH . ? R HOH 161 ? 1_555 67.9 ? 32 O6 ? B G 35 ? R G 42 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 740 ? 1_555 83.8 ? 33 O6 ? B G 35 ? R G 42 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 741 ? 1_555 96.2 ? 34 O ? J HOH . ? R HOH 740 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 741 ? 1_555 179.8 ? 35 O6 ? B G 35 ? R G 42 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 742 ? 1_555 82.7 ? 36 O ? J HOH . ? R HOH 740 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 742 ? 1_555 90.4 ? 37 O ? J HOH . ? R HOH 741 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 742 ? 1_555 89.8 ? 38 O6 ? B G 35 ? R G 42 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 743 ? 1_555 96.5 ? 39 O ? J HOH . ? R HOH 740 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 743 ? 1_555 89.5 ? 40 O ? J HOH . ? R HOH 741 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 743 ? 1_555 90.4 ? 41 O ? J HOH . ? R HOH 742 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 743 ? 1_555 179.3 ? 42 O6 ? B G 35 ? R G 42 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 744 ? 1_555 170.1 ? 43 O ? J HOH . ? R HOH 740 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 744 ? 1_555 90.0 ? 44 O ? J HOH . ? R HOH 741 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 744 ? 1_555 90.0 ? 45 O ? J HOH . ? R HOH 742 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 744 ? 1_555 89.6 ? 46 O ? J HOH . ? R HOH 743 ? 1_555 MG ? H MG . ? R MG 5 ? 1_555 O ? J HOH . ? R HOH 744 ? 1_555 91.2 ? 47 OP2 ? B A 41 ? R A 48 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 729 ? 1_555 158.8 ? 48 OP2 ? B A 41 ? R A 48 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 730 ? 1_555 110.5 ? 49 O ? J HOH . ? R HOH 729 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 730 ? 1_555 90.4 ? 50 OP2 ? B A 41 ? R A 48 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 731 ? 1_555 69.9 ? 51 O ? J HOH . ? R HOH 729 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 731 ? 1_555 89.1 ? 52 O ? J HOH . ? R HOH 730 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 731 ? 1_555 179.5 ? 53 OP2 ? B A 41 ? R A 48 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 732 ? 1_555 88.0 ? 54 O ? J HOH . ? R HOH 729 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 732 ? 1_555 88.9 ? 55 O ? J HOH . ? R HOH 730 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 732 ? 1_555 89.5 ? 56 O ? J HOH . ? R HOH 731 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 732 ? 1_555 90.4 ? 57 OP2 ? B A 41 ? R A 48 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 733 ? 1_555 92.6 ? 58 O ? J HOH . ? R HOH 729 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 733 ? 1_555 90.6 ? 59 O ? J HOH . ? R HOH 730 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 733 ? 1_555 90.3 ? 60 O ? J HOH . ? R HOH 731 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 733 ? 1_555 89.8 ? 61 O ? J HOH . ? R HOH 732 ? 1_555 MG ? E MG . ? R MG 670 ? 1_555 O ? J HOH . ? R HOH 733 ? 1_555 179.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref_seq_dif 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 3 'Structure model' '_struct_ref_seq_dif.details' 35 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -14.2399 -4.3803 22.3020 0.4632 0.2931 0.1569 0.0199 0.1601 0.0195 17.1276 7.0041 7.0560 2.5107 1.1895 -1.9606 0.1639 -0.8546 -0.5377 0.8490 -0.1776 0.4128 0.0910 -0.3856 0.0137 'X-RAY DIFFRACTION' 2 ? refined -2.2192 -1.7566 -6.0709 0.2817 0.1041 0.1784 0.0457 -0.0720 0.0279 2.2231 2.5465 2.2971 0.7402 -1.4779 -0.0342 -0.0468 0.4048 -0.0374 -0.4174 0.0628 0.1106 -0.0508 -0.2331 -0.0160 'X-RAY DIFFRACTION' 3 ? refined -15.0206 -4.0060 2.9990 0.2549 0.2456 0.3190 0.0814 0.0189 0.0222 2.0878 2.3987 5.0541 0.7014 0.6373 -0.4760 -0.0147 0.2956 0.0208 -0.1695 0.0196 0.3893 -0.3833 -0.6250 -0.0049 'X-RAY DIFFRACTION' 4 ? refined -17.7168 10.0842 -32.7336 0.3427 0.5249 1.1319 0.0481 -0.0876 -0.0748 9.2811 3.3611 5.4248 2.4823 -3.6152 -4.2577 0.9414 -0.0554 1.7623 0.2947 0.4019 1.1096 -0.4251 -0.3753 -1.3432 'X-RAY DIFFRACTION' 5 ? refined -7.0168 16.3283 -40.3012 0.2482 0.3578 0.7960 0.0520 -0.0008 0.0215 8.5598 26.6322 10.8829 1.6941 -1.4201 -7.7860 0.5642 0.5106 1.8324 -0.9445 -0.0686 0.4835 -0.6197 0.2963 -0.4956 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 R 8 ? ? R 20 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 R 21 ? ? R 65 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 R 75 ? ? R 98 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 R 660 ? ? R 669 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 P 7 ? ? P 93 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 R _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 48 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 R _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 48 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 R _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 48 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 114.72 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 6.22 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR P 89 ? ? -165.90 115.32 2 1 SER P 91 ? ? -77.07 -91.60 3 1 ASP P 92 ? ? 42.63 -126.61 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 P MET 1 ? A MET 1 2 1 Y 1 P ALA 2 ? A ALA 2 3 1 Y 1 P VAL 3 ? A VAL 3 4 1 Y 1 P PRO 4 ? A PRO 4 5 1 Y 1 P GLU 5 ? A GLU 5 6 1 Y 1 P THR 6 ? A THR 6 7 1 Y 1 P ILE 94 ? A ILE 94 8 1 Y 1 P ALA 95 ? A ALA 95 9 1 Y 1 P LYS 96 ? A LYS 96 10 1 Y 1 P MET 97 ? A MET 97 11 1 Y 1 P LYS 98 ? A LYS 98 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 C2E P1 P N N 146 C2E O2P O N N 147 C2E O1P O N N 148 C2E "O5'" O N N 149 C2E "C5'" C N N 150 C2E "C4'" C N R 151 C2E "O4'" O N N 152 C2E "C3'" C N S 153 C2E "O3'" O N N 154 C2E "C2'" C N R 155 C2E "O2'" O N N 156 C2E "C1'" C N R 157 C2E N9 N Y N 158 C2E C8 C Y N 159 C2E N7 N Y N 160 C2E C5 C Y N 161 C2E C6 C N N 162 C2E O6 O N N 163 C2E N1 N N N 164 C2E C2 C N N 165 C2E N2 N N N 166 C2E N3 N N N 167 C2E C4 C Y N 168 C2E P11 P N N 169 C2E O21 O N N 170 C2E O11 O N N 171 C2E O5A O N N 172 C2E C5A C N N 173 C2E C4A C N R 174 C2E O4A O N N 175 C2E C3A C N S 176 C2E O3A O N N 177 C2E C2A C N R 178 C2E O2A O N N 179 C2E C1A C N R 180 C2E N91 N Y N 181 C2E C81 C Y N 182 C2E N71 N Y N 183 C2E C51 C Y N 184 C2E C61 C N N 185 C2E O61 O N N 186 C2E N11 N N N 187 C2E C21 C N N 188 C2E N21 N N N 189 C2E N31 N N N 190 C2E C41 C Y N 191 C2E HO2P H N N 192 C2E "H5'1" H N N 193 C2E "H5'2" H N N 194 C2E "H4'" H N N 195 C2E "H3'" H N N 196 C2E "H2'" H N N 197 C2E "HO2'" H N N 198 C2E "H1'" H N N 199 C2E H8 H N N 200 C2E HN1 H N N 201 C2E HN21 H N N 202 C2E HN22 H N N 203 C2E HO21 H N N 204 C2E H511 H N N 205 C2E H512 H N N 206 C2E H4A H N N 207 C2E H3A H N N 208 C2E H2A H N N 209 C2E HO2A H N N 210 C2E H1A H N N 211 C2E H81 H N N 212 C2E HN11 H N N 213 C2E HN24 H N N 214 C2E HN23 H N N 215 G OP3 O N N 216 G P P N N 217 G OP1 O N N 218 G OP2 O N N 219 G "O5'" O N N 220 G "C5'" C N N 221 G "C4'" C N R 222 G "O4'" O N N 223 G "C3'" C N S 224 G "O3'" O N N 225 G "C2'" C N R 226 G "O2'" O N N 227 G "C1'" C N R 228 G N9 N Y N 229 G C8 C Y N 230 G N7 N Y N 231 G C5 C Y N 232 G C6 C N N 233 G O6 O N N 234 G N1 N N N 235 G C2 C N N 236 G N2 N N N 237 G N3 N N N 238 G C4 C Y N 239 G HOP3 H N N 240 G HOP2 H N N 241 G "H5'" H N N 242 G "H5''" H N N 243 G "H4'" H N N 244 G "H3'" H N N 245 G "HO3'" H N N 246 G "H2'" H N N 247 G "HO2'" H N N 248 G "H1'" H N N 249 G H8 H N N 250 G H1 H N N 251 G H21 H N N 252 G H22 H N N 253 GLN N N N N 254 GLN CA C N S 255 GLN C C N N 256 GLN O O N N 257 GLN CB C N N 258 GLN CG C N N 259 GLN CD C N N 260 GLN OE1 O N N 261 GLN NE2 N N N 262 GLN OXT O N N 263 GLN H H N N 264 GLN H2 H N N 265 GLN HA H N N 266 GLN HB2 H N N 267 GLN HB3 H N N 268 GLN HG2 H N N 269 GLN HG3 H N N 270 GLN HE21 H N N 271 GLN HE22 H N N 272 GLN HXT H N N 273 GLU N N N N 274 GLU CA C N S 275 GLU C C N N 276 GLU O O N N 277 GLU CB C N N 278 GLU CG C N N 279 GLU CD C N N 280 GLU OE1 O N N 281 GLU OE2 O N N 282 GLU OXT O N N 283 GLU H H N N 284 GLU H2 H N N 285 GLU HA H N N 286 GLU HB2 H N N 287 GLU HB3 H N N 288 GLU HG2 H N N 289 GLU HG3 H N N 290 GLU HE2 H N N 291 GLU HXT H N N 292 GLY N N N N 293 GLY CA C N N 294 GLY C C N N 295 GLY O O N N 296 GLY OXT O N N 297 GLY H H N N 298 GLY H2 H N N 299 GLY HA2 H N N 300 GLY HA3 H N N 301 GLY HXT H N N 302 GTP PG P N N 303 GTP O1G O N N 304 GTP O2G O N N 305 GTP O3G O N N 306 GTP O3B O N N 307 GTP PB P N N 308 GTP O1B O N N 309 GTP O2B O N N 310 GTP O3A O N N 311 GTP PA P N N 312 GTP O1A O N N 313 GTP O2A O N N 314 GTP "O5'" O N N 315 GTP "C5'" C N N 316 GTP "C4'" C N R 317 GTP "O4'" O N N 318 GTP "C3'" C N S 319 GTP "O3'" O N N 320 GTP "C2'" C N R 321 GTP "O2'" O N N 322 GTP "C1'" C N R 323 GTP N9 N Y N 324 GTP C8 C Y N 325 GTP N7 N Y N 326 GTP C5 C Y N 327 GTP C6 C N N 328 GTP O6 O N N 329 GTP N1 N N N 330 GTP C2 C N N 331 GTP N2 N N N 332 GTP N3 N N N 333 GTP C4 C Y N 334 GTP HOG2 H N N 335 GTP HOG3 H N N 336 GTP HOB2 H N N 337 GTP HOA2 H N N 338 GTP "H5'" H N N 339 GTP "H5''" H N N 340 GTP "H4'" H N N 341 GTP "H3'" H N N 342 GTP "HO3'" H N N 343 GTP "H2'" H N N 344 GTP "HO2'" H N N 345 GTP "H1'" H N N 346 GTP H8 H N N 347 GTP HN1 H N N 348 GTP HN21 H N N 349 GTP HN22 H N N 350 HIS N N N N 351 HIS CA C N S 352 HIS C C N N 353 HIS O O N N 354 HIS CB C N N 355 HIS CG C Y N 356 HIS ND1 N Y N 357 HIS CD2 C Y N 358 HIS CE1 C Y N 359 HIS NE2 N Y N 360 HIS OXT O N N 361 HIS H H N N 362 HIS H2 H N N 363 HIS HA H N N 364 HIS HB2 H N N 365 HIS HB3 H N N 366 HIS HD1 H N N 367 HIS HD2 H N N 368 HIS HE1 H N N 369 HIS HE2 H N N 370 HIS HXT H N N 371 HOH O O N N 372 HOH H1 H N N 373 HOH H2 H N N 374 ILE N N N N 375 ILE CA C N S 376 ILE C C N N 377 ILE O O N N 378 ILE CB C N S 379 ILE CG1 C N N 380 ILE CG2 C N N 381 ILE CD1 C N N 382 ILE OXT O N N 383 ILE H H N N 384 ILE H2 H N N 385 ILE HA H N N 386 ILE HB H N N 387 ILE HG12 H N N 388 ILE HG13 H N N 389 ILE HG21 H N N 390 ILE HG22 H N N 391 ILE HG23 H N N 392 ILE HD11 H N N 393 ILE HD12 H N N 394 ILE HD13 H N N 395 ILE HXT H N N 396 LEU N N N N 397 LEU CA C N S 398 LEU C C N N 399 LEU O O N N 400 LEU CB C N N 401 LEU CG C N N 402 LEU CD1 C N N 403 LEU CD2 C N N 404 LEU OXT O N N 405 LEU H H N N 406 LEU H2 H N N 407 LEU HA H N N 408 LEU HB2 H N N 409 LEU HB3 H N N 410 LEU HG H N N 411 LEU HD11 H N N 412 LEU HD12 H N N 413 LEU HD13 H N N 414 LEU HD21 H N N 415 LEU HD22 H N N 416 LEU HD23 H N N 417 LEU HXT H N N 418 LYS N N N N 419 LYS CA C N S 420 LYS C C N N 421 LYS O O N N 422 LYS CB C N N 423 LYS CG C N N 424 LYS CD C N N 425 LYS CE C N N 426 LYS NZ N N N 427 LYS OXT O N N 428 LYS H H N N 429 LYS H2 H N N 430 LYS HA H N N 431 LYS HB2 H N N 432 LYS HB3 H N N 433 LYS HG2 H N N 434 LYS HG3 H N N 435 LYS HD2 H N N 436 LYS HD3 H N N 437 LYS HE2 H N N 438 LYS HE3 H N N 439 LYS HZ1 H N N 440 LYS HZ2 H N N 441 LYS HZ3 H N N 442 LYS HXT H N N 443 MET N N N N 444 MET CA C N S 445 MET C C N N 446 MET O O N N 447 MET CB C N N 448 MET CG C N N 449 MET SD S N N 450 MET CE C N N 451 MET OXT O N N 452 MET H H N N 453 MET H2 H N N 454 MET HA H N N 455 MET HB2 H N N 456 MET HB3 H N N 457 MET HG2 H N N 458 MET HG3 H N N 459 MET HE1 H N N 460 MET HE2 H N N 461 MET HE3 H N N 462 MET HXT H N N 463 MG MG MG N N 464 PHE N N N N 465 PHE CA C N S 466 PHE C C N N 467 PHE O O N N 468 PHE CB C N N 469 PHE CG C Y N 470 PHE CD1 C Y N 471 PHE CD2 C Y N 472 PHE CE1 C Y N 473 PHE CE2 C Y N 474 PHE CZ C Y N 475 PHE OXT O N N 476 PHE H H N N 477 PHE H2 H N N 478 PHE HA H N N 479 PHE HB2 H N N 480 PHE HB3 H N N 481 PHE HD1 H N N 482 PHE HD2 H N N 483 PHE HE1 H N N 484 PHE HE2 H N N 485 PHE HZ H N N 486 PHE HXT H N N 487 PRO N N N N 488 PRO CA C N S 489 PRO C C N N 490 PRO O O N N 491 PRO CB C N N 492 PRO CG C N N 493 PRO CD C N N 494 PRO OXT O N N 495 PRO H H N N 496 PRO HA H N N 497 PRO HB2 H N N 498 PRO HB3 H N N 499 PRO HG2 H N N 500 PRO HG3 H N N 501 PRO HD2 H N N 502 PRO HD3 H N N 503 PRO HXT H N N 504 SER N N N N 505 SER CA C N S 506 SER C C N N 507 SER O O N N 508 SER CB C N N 509 SER OG O N N 510 SER OXT O N N 511 SER H H N N 512 SER H2 H N N 513 SER HA H N N 514 SER HB2 H N N 515 SER HB3 H N N 516 SER HG H N N 517 SER HXT H N N 518 THR N N N N 519 THR CA C N S 520 THR C C N N 521 THR O O N N 522 THR CB C N R 523 THR OG1 O N N 524 THR CG2 C N N 525 THR OXT O N N 526 THR H H N N 527 THR H2 H N N 528 THR HA H N N 529 THR HB H N N 530 THR HG1 H N N 531 THR HG21 H N N 532 THR HG22 H N N 533 THR HG23 H N N 534 THR HXT H N N 535 TYR N N N N 536 TYR CA C N S 537 TYR C C N N 538 TYR O O N N 539 TYR CB C N N 540 TYR CG C Y N 541 TYR CD1 C Y N 542 TYR CD2 C Y N 543 TYR CE1 C Y N 544 TYR CE2 C Y N 545 TYR CZ C Y N 546 TYR OH O N N 547 TYR OXT O N N 548 TYR H H N N 549 TYR H2 H N N 550 TYR HA H N N 551 TYR HB2 H N N 552 TYR HB3 H N N 553 TYR HD1 H N N 554 TYR HD2 H N N 555 TYR HE1 H N N 556 TYR HE2 H N N 557 TYR HH H N N 558 TYR HXT H N N 559 U OP3 O N N 560 U P P N N 561 U OP1 O N N 562 U OP2 O N N 563 U "O5'" O N N 564 U "C5'" C N N 565 U "C4'" C N R 566 U "O4'" O N N 567 U "C3'" C N S 568 U "O3'" O N N 569 U "C2'" C N R 570 U "O2'" O N N 571 U "C1'" C N R 572 U N1 N N N 573 U C2 C N N 574 U O2 O N N 575 U N3 N N N 576 U C4 C N N 577 U O4 O N N 578 U C5 C N N 579 U C6 C N N 580 U HOP3 H N N 581 U HOP2 H N N 582 U "H5'" H N N 583 U "H5''" H N N 584 U "H4'" H N N 585 U "H3'" H N N 586 U "HO3'" H N N 587 U "H2'" H N N 588 U "HO2'" H N N 589 U "H1'" H N N 590 U H3 H N N 591 U H5 H N N 592 U H6 H N N 593 VAL N N N N 594 VAL CA C N S 595 VAL C C N N 596 VAL O O N N 597 VAL CB C N N 598 VAL CG1 C N N 599 VAL CG2 C N N 600 VAL OXT O N N 601 VAL H H N N 602 VAL H2 H N N 603 VAL HA H N N 604 VAL HB H N N 605 VAL HG11 H N N 606 VAL HG12 H N N 607 VAL HG13 H N N 608 VAL HG21 H N N 609 VAL HG22 H N N 610 VAL HG23 H N N 611 VAL HXT H N N 612 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 C2E P1 O2P sing N N 145 C2E O1P P1 doub N N 146 C2E "O5'" P1 sing N N 147 C2E "C5'" "O5'" sing N N 148 C2E "C4'" "O4'" sing N N 149 C2E "C4'" "C5'" sing N N 150 C2E "C3'" "C4'" sing N N 151 C2E "O3'" P11 sing N N 152 C2E "O3'" "C3'" sing N N 153 C2E "C2'" "C3'" sing N N 154 C2E "C2'" "C1'" sing N N 155 C2E "O2'" "C2'" sing N N 156 C2E "C1'" "O4'" sing N N 157 C2E "C1'" N9 sing N N 158 C2E N9 C4 sing Y N 159 C2E N9 C8 sing Y N 160 C2E C8 N7 doub Y N 161 C2E C5 N7 sing Y N 162 C2E C5 C6 sing N N 163 C2E C6 O6 doub N N 164 C2E N1 C6 sing N N 165 C2E C2 N1 sing N N 166 C2E N2 C2 sing N N 167 C2E N3 C2 doub N N 168 C2E N3 C4 sing N N 169 C2E C4 C5 doub Y N 170 C2E P11 O21 sing N N 171 C2E P11 O5A sing N N 172 C2E O11 P11 doub N N 173 C2E C5A O5A sing N N 174 C2E C5A C4A sing N N 175 C2E C4A O4A sing N N 176 C2E C4A C3A sing N N 177 C2E O4A C1A sing N N 178 C2E C3A C2A sing N N 179 C2E O3A C3A sing N N 180 C2E O3A P1 sing N N 181 C2E C2A O2A sing N N 182 C2E C1A C2A sing N N 183 C2E C1A N91 sing N N 184 C2E N91 C41 sing Y N 185 C2E C81 N71 doub Y N 186 C2E C81 N91 sing Y N 187 C2E N71 C51 sing Y N 188 C2E C51 C41 doub Y N 189 C2E C51 C61 sing N N 190 C2E C61 O61 doub N N 191 C2E C61 N11 sing N N 192 C2E C21 N11 sing N N 193 C2E C21 N21 sing N N 194 C2E N31 C21 doub N N 195 C2E C41 N31 sing N N 196 C2E O2P HO2P sing N N 197 C2E "C5'" "H5'1" sing N N 198 C2E "C5'" "H5'2" sing N N 199 C2E "C4'" "H4'" sing N N 200 C2E "C3'" "H3'" sing N N 201 C2E "C2'" "H2'" sing N N 202 C2E "O2'" "HO2'" sing N N 203 C2E "C1'" "H1'" sing N N 204 C2E C8 H8 sing N N 205 C2E N1 HN1 sing N N 206 C2E N2 HN21 sing N N 207 C2E N2 HN22 sing N N 208 C2E O21 HO21 sing N N 209 C2E C5A H511 sing N N 210 C2E C5A H512 sing N N 211 C2E C4A H4A sing N N 212 C2E C3A H3A sing N N 213 C2E C2A H2A sing N N 214 C2E O2A HO2A sing N N 215 C2E C1A H1A sing N N 216 C2E C81 H81 sing N N 217 C2E N11 HN11 sing N N 218 C2E N21 HN24 sing N N 219 C2E N21 HN23 sing N N 220 G OP3 P sing N N 221 G OP3 HOP3 sing N N 222 G P OP1 doub N N 223 G P OP2 sing N N 224 G P "O5'" sing N N 225 G OP2 HOP2 sing N N 226 G "O5'" "C5'" sing N N 227 G "C5'" "C4'" sing N N 228 G "C5'" "H5'" sing N N 229 G "C5'" "H5''" sing N N 230 G "C4'" "O4'" sing N N 231 G "C4'" "C3'" sing N N 232 G "C4'" "H4'" sing N N 233 G "O4'" "C1'" sing N N 234 G "C3'" "O3'" sing N N 235 G "C3'" "C2'" sing N N 236 G "C3'" "H3'" sing N N 237 G "O3'" "HO3'" sing N N 238 G "C2'" "O2'" sing N N 239 G "C2'" "C1'" sing N N 240 G "C2'" "H2'" sing N N 241 G "O2'" "HO2'" sing N N 242 G "C1'" N9 sing N N 243 G "C1'" "H1'" sing N N 244 G N9 C8 sing Y N 245 G N9 C4 sing Y N 246 G C8 N7 doub Y N 247 G C8 H8 sing N N 248 G N7 C5 sing Y N 249 G C5 C6 sing N N 250 G C5 C4 doub Y N 251 G C6 O6 doub N N 252 G C6 N1 sing N N 253 G N1 C2 sing N N 254 G N1 H1 sing N N 255 G C2 N2 sing N N 256 G C2 N3 doub N N 257 G N2 H21 sing N N 258 G N2 H22 sing N N 259 G N3 C4 sing N N 260 GLN N CA sing N N 261 GLN N H sing N N 262 GLN N H2 sing N N 263 GLN CA C sing N N 264 GLN CA CB sing N N 265 GLN CA HA sing N N 266 GLN C O doub N N 267 GLN C OXT sing N N 268 GLN CB CG sing N N 269 GLN CB HB2 sing N N 270 GLN CB HB3 sing N N 271 GLN CG CD sing N N 272 GLN CG HG2 sing N N 273 GLN CG HG3 sing N N 274 GLN CD OE1 doub N N 275 GLN CD NE2 sing N N 276 GLN NE2 HE21 sing N N 277 GLN NE2 HE22 sing N N 278 GLN OXT HXT sing N N 279 GLU N CA sing N N 280 GLU N H sing N N 281 GLU N H2 sing N N 282 GLU CA C sing N N 283 GLU CA CB sing N N 284 GLU CA HA sing N N 285 GLU C O doub N N 286 GLU C OXT sing N N 287 GLU CB CG sing N N 288 GLU CB HB2 sing N N 289 GLU CB HB3 sing N N 290 GLU CG CD sing N N 291 GLU CG HG2 sing N N 292 GLU CG HG3 sing N N 293 GLU CD OE1 doub N N 294 GLU CD OE2 sing N N 295 GLU OE2 HE2 sing N N 296 GLU OXT HXT sing N N 297 GLY N CA sing N N 298 GLY N H sing N N 299 GLY N H2 sing N N 300 GLY CA C sing N N 301 GLY CA HA2 sing N N 302 GLY CA HA3 sing N N 303 GLY C O doub N N 304 GLY C OXT sing N N 305 GLY OXT HXT sing N N 306 GTP PG O1G doub N N 307 GTP PG O2G sing N N 308 GTP PG O3G sing N N 309 GTP PG O3B sing N N 310 GTP O2G HOG2 sing N N 311 GTP O3G HOG3 sing N N 312 GTP O3B PB sing N N 313 GTP PB O1B doub N N 314 GTP PB O2B sing N N 315 GTP PB O3A sing N N 316 GTP O2B HOB2 sing N N 317 GTP O3A PA sing N N 318 GTP PA O1A doub N N 319 GTP PA O2A sing N N 320 GTP PA "O5'" sing N N 321 GTP O2A HOA2 sing N N 322 GTP "O5'" "C5'" sing N N 323 GTP "C5'" "C4'" sing N N 324 GTP "C5'" "H5'" sing N N 325 GTP "C5'" "H5''" sing N N 326 GTP "C4'" "O4'" sing N N 327 GTP "C4'" "C3'" sing N N 328 GTP "C4'" "H4'" sing N N 329 GTP "O4'" "C1'" sing N N 330 GTP "C3'" "O3'" sing N N 331 GTP "C3'" "C2'" sing N N 332 GTP "C3'" "H3'" sing N N 333 GTP "O3'" "HO3'" sing N N 334 GTP "C2'" "O2'" sing N N 335 GTP "C2'" "C1'" sing N N 336 GTP "C2'" "H2'" sing N N 337 GTP "O2'" "HO2'" sing N N 338 GTP "C1'" N9 sing N N 339 GTP "C1'" "H1'" sing N N 340 GTP N9 C8 sing Y N 341 GTP N9 C4 sing Y N 342 GTP C8 N7 doub Y N 343 GTP C8 H8 sing N N 344 GTP N7 C5 sing Y N 345 GTP C5 C6 sing N N 346 GTP C5 C4 doub Y N 347 GTP C6 O6 doub N N 348 GTP C6 N1 sing N N 349 GTP N1 C2 sing N N 350 GTP N1 HN1 sing N N 351 GTP C2 N2 sing N N 352 GTP C2 N3 doub N N 353 GTP N2 HN21 sing N N 354 GTP N2 HN22 sing N N 355 GTP N3 C4 sing N N 356 HIS N CA sing N N 357 HIS N H sing N N 358 HIS N H2 sing N N 359 HIS CA C sing N N 360 HIS CA CB sing N N 361 HIS CA HA sing N N 362 HIS C O doub N N 363 HIS C OXT sing N N 364 HIS CB CG sing N N 365 HIS CB HB2 sing N N 366 HIS CB HB3 sing N N 367 HIS CG ND1 sing Y N 368 HIS CG CD2 doub Y N 369 HIS ND1 CE1 doub Y N 370 HIS ND1 HD1 sing N N 371 HIS CD2 NE2 sing Y N 372 HIS CD2 HD2 sing N N 373 HIS CE1 NE2 sing Y N 374 HIS CE1 HE1 sing N N 375 HIS NE2 HE2 sing N N 376 HIS OXT HXT sing N N 377 HOH O H1 sing N N 378 HOH O H2 sing N N 379 ILE N CA sing N N 380 ILE N H sing N N 381 ILE N H2 sing N N 382 ILE CA C sing N N 383 ILE CA CB sing N N 384 ILE CA HA sing N N 385 ILE C O doub N N 386 ILE C OXT sing N N 387 ILE CB CG1 sing N N 388 ILE CB CG2 sing N N 389 ILE CB HB sing N N 390 ILE CG1 CD1 sing N N 391 ILE CG1 HG12 sing N N 392 ILE CG1 HG13 sing N N 393 ILE CG2 HG21 sing N N 394 ILE CG2 HG22 sing N N 395 ILE CG2 HG23 sing N N 396 ILE CD1 HD11 sing N N 397 ILE CD1 HD12 sing N N 398 ILE CD1 HD13 sing N N 399 ILE OXT HXT sing N N 400 LEU N CA sing N N 401 LEU N H sing N N 402 LEU N H2 sing N N 403 LEU CA C sing N N 404 LEU CA CB sing N N 405 LEU CA HA sing N N 406 LEU C O doub N N 407 LEU C OXT sing N N 408 LEU CB CG sing N N 409 LEU CB HB2 sing N N 410 LEU CB HB3 sing N N 411 LEU CG CD1 sing N N 412 LEU CG CD2 sing N N 413 LEU CG HG sing N N 414 LEU CD1 HD11 sing N N 415 LEU CD1 HD12 sing N N 416 LEU CD1 HD13 sing N N 417 LEU CD2 HD21 sing N N 418 LEU CD2 HD22 sing N N 419 LEU CD2 HD23 sing N N 420 LEU OXT HXT sing N N 421 LYS N CA sing N N 422 LYS N H sing N N 423 LYS N H2 sing N N 424 LYS CA C sing N N 425 LYS CA CB sing N N 426 LYS CA HA sing N N 427 LYS C O doub N N 428 LYS C OXT sing N N 429 LYS CB CG sing N N 430 LYS CB HB2 sing N N 431 LYS CB HB3 sing N N 432 LYS CG CD sing N N 433 LYS CG HG2 sing N N 434 LYS CG HG3 sing N N 435 LYS CD CE sing N N 436 LYS CD HD2 sing N N 437 LYS CD HD3 sing N N 438 LYS CE NZ sing N N 439 LYS CE HE2 sing N N 440 LYS CE HE3 sing N N 441 LYS NZ HZ1 sing N N 442 LYS NZ HZ2 sing N N 443 LYS NZ HZ3 sing N N 444 LYS OXT HXT sing N N 445 MET N CA sing N N 446 MET N H sing N N 447 MET N H2 sing N N 448 MET CA C sing N N 449 MET CA CB sing N N 450 MET CA HA sing N N 451 MET C O doub N N 452 MET C OXT sing N N 453 MET CB CG sing N N 454 MET CB HB2 sing N N 455 MET CB HB3 sing N N 456 MET CG SD sing N N 457 MET CG HG2 sing N N 458 MET CG HG3 sing N N 459 MET SD CE sing N N 460 MET CE HE1 sing N N 461 MET CE HE2 sing N N 462 MET CE HE3 sing N N 463 MET OXT HXT sing N N 464 PHE N CA sing N N 465 PHE N H sing N N 466 PHE N H2 sing N N 467 PHE CA C sing N N 468 PHE CA CB sing N N 469 PHE CA HA sing N N 470 PHE C O doub N N 471 PHE C OXT sing N N 472 PHE CB CG sing N N 473 PHE CB HB2 sing N N 474 PHE CB HB3 sing N N 475 PHE CG CD1 doub Y N 476 PHE CG CD2 sing Y N 477 PHE CD1 CE1 sing Y N 478 PHE CD1 HD1 sing N N 479 PHE CD2 CE2 doub Y N 480 PHE CD2 HD2 sing N N 481 PHE CE1 CZ doub Y N 482 PHE CE1 HE1 sing N N 483 PHE CE2 CZ sing Y N 484 PHE CE2 HE2 sing N N 485 PHE CZ HZ sing N N 486 PHE OXT HXT sing N N 487 PRO N CA sing N N 488 PRO N CD sing N N 489 PRO N H sing N N 490 PRO CA C sing N N 491 PRO CA CB sing N N 492 PRO CA HA sing N N 493 PRO C O doub N N 494 PRO C OXT sing N N 495 PRO CB CG sing N N 496 PRO CB HB2 sing N N 497 PRO CB HB3 sing N N 498 PRO CG CD sing N N 499 PRO CG HG2 sing N N 500 PRO CG HG3 sing N N 501 PRO CD HD2 sing N N 502 PRO CD HD3 sing N N 503 PRO OXT HXT sing N N 504 SER N CA sing N N 505 SER N H sing N N 506 SER N H2 sing N N 507 SER CA C sing N N 508 SER CA CB sing N N 509 SER CA HA sing N N 510 SER C O doub N N 511 SER C OXT sing N N 512 SER CB OG sing N N 513 SER CB HB2 sing N N 514 SER CB HB3 sing N N 515 SER OG HG sing N N 516 SER OXT HXT sing N N 517 THR N CA sing N N 518 THR N H sing N N 519 THR N H2 sing N N 520 THR CA C sing N N 521 THR CA CB sing N N 522 THR CA HA sing N N 523 THR C O doub N N 524 THR C OXT sing N N 525 THR CB OG1 sing N N 526 THR CB CG2 sing N N 527 THR CB HB sing N N 528 THR OG1 HG1 sing N N 529 THR CG2 HG21 sing N N 530 THR CG2 HG22 sing N N 531 THR CG2 HG23 sing N N 532 THR OXT HXT sing N N 533 TYR N CA sing N N 534 TYR N H sing N N 535 TYR N H2 sing N N 536 TYR CA C sing N N 537 TYR CA CB sing N N 538 TYR CA HA sing N N 539 TYR C O doub N N 540 TYR C OXT sing N N 541 TYR CB CG sing N N 542 TYR CB HB2 sing N N 543 TYR CB HB3 sing N N 544 TYR CG CD1 doub Y N 545 TYR CG CD2 sing Y N 546 TYR CD1 CE1 sing Y N 547 TYR CD1 HD1 sing N N 548 TYR CD2 CE2 doub Y N 549 TYR CD2 HD2 sing N N 550 TYR CE1 CZ doub Y N 551 TYR CE1 HE1 sing N N 552 TYR CE2 CZ sing Y N 553 TYR CE2 HE2 sing N N 554 TYR CZ OH sing N N 555 TYR OH HH sing N N 556 TYR OXT HXT sing N N 557 U OP3 P sing N N 558 U OP3 HOP3 sing N N 559 U P OP1 doub N N 560 U P OP2 sing N N 561 U P "O5'" sing N N 562 U OP2 HOP2 sing N N 563 U "O5'" "C5'" sing N N 564 U "C5'" "C4'" sing N N 565 U "C5'" "H5'" sing N N 566 U "C5'" "H5''" sing N N 567 U "C4'" "O4'" sing N N 568 U "C4'" "C3'" sing N N 569 U "C4'" "H4'" sing N N 570 U "O4'" "C1'" sing N N 571 U "C3'" "O3'" sing N N 572 U "C3'" "C2'" sing N N 573 U "C3'" "H3'" sing N N 574 U "O3'" "HO3'" sing N N 575 U "C2'" "O2'" sing N N 576 U "C2'" "C1'" sing N N 577 U "C2'" "H2'" sing N N 578 U "O2'" "HO2'" sing N N 579 U "C1'" N1 sing N N 580 U "C1'" "H1'" sing N N 581 U N1 C2 sing N N 582 U N1 C6 sing N N 583 U C2 O2 doub N N 584 U C2 N3 sing N N 585 U N3 C4 sing N N 586 U N3 H3 sing N N 587 U C4 O4 doub N N 588 U C4 C5 sing N N 589 U C5 C6 doub N N 590 U C5 H5 sing N N 591 U C6 H6 sing N N 592 VAL N CA sing N N 593 VAL N H sing N N 594 VAL N H2 sing N N 595 VAL CA C sing N N 596 VAL CA CB sing N N 597 VAL CA HA sing N N 598 VAL C O doub N N 599 VAL C OXT sing N N 600 VAL CB CG1 sing N N 601 VAL CB CG2 sing N N 602 VAL CB HB sing N N 603 VAL CG1 HG11 sing N N 604 VAL CG1 HG12 sing N N 605 VAL CG1 HG13 sing N N 606 VAL CG2 HG21 sing N N 607 VAL CG2 HG22 sing N N 608 VAL CG2 HG23 sing N N 609 VAL OXT HXT sing N N 610 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3MXH 'double helix' 3MXH 'a-form double helix' 3MXH 'hairpin loop' 3MXH tetraloop 3MXH 'bulge loop' 3MXH 'mismatched base pair' 3MXH 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 4 1_555 B G 92 1_555 -0.088 0.084 0.286 8.788 -14.590 -3.260 1 R_C11:G98_R R 11 ? R 98 ? 19 1 1 B A 5 1_555 B G 91 1_555 -0.033 1.429 -0.518 -11.278 -16.316 -14.511 2 R_A12:G97_R R 12 ? R 97 ? 8 1 1 B C 6 1_555 B G 88 1_555 -0.698 -0.072 0.023 -14.183 -11.679 4.810 3 R_C13:G94_R R 13 ? R 94 ? 19 1 1 B G 7 1_555 B C 87 1_555 -0.516 0.154 0.195 9.056 -7.173 6.852 4 R_G14:C93_R R 14 ? R 93 ? 19 1 1 B G 12 1_555 B A 40 1_555 -0.032 2.977 -0.294 -8.575 -6.500 -55.574 5 R_G19:A47_R R 19 ? R 47 ? ? ? 1 B G 14 1_555 B C 39 1_555 -0.272 -0.227 -0.328 -2.209 -0.782 -2.107 6 R_G21:C46_R R 21 ? R 46 ? 19 1 1 B C 15 1_555 B G 38 1_555 0.159 -0.175 -0.017 5.193 4.817 0.579 7 R_C22:G45_R R 22 ? R 45 ? 19 1 1 B G 77 1_555 B C 37 1_555 -0.346 -0.278 0.325 1.959 -6.756 -1.806 8 R_G83:C44_R R 83 ? R 44 ? 19 1 1 B A 18 1_555 B G 35 1_555 -6.723 -4.073 0.150 3.937 -9.202 -2.139 9 R_A25:G42_R R 25 ? R 42 ? 11 9 1 B C 19 1_555 B G 34 1_555 0.052 -0.168 -0.180 8.125 -10.924 -1.765 10 R_C26:G41_R R 26 ? R 41 ? 19 1 1 B C 20 1_555 B G 33 1_555 0.262 -0.210 -0.033 5.889 -9.986 0.303 11 R_C27:G40_R R 27 ? R 40 ? 19 1 1 B A 21 1_555 B U 32 1_555 -0.223 -0.085 -0.122 -0.595 -14.178 5.652 12 R_A28:U39_R R 28 ? R 39 ? 20 1 1 B U 22 1_555 B G 31 1_555 2.453 -0.624 -0.015 1.832 -15.195 1.794 13 R_U29:G38_R R 29 ? R 38 ? 28 1 1 B U 23 1_555 B A 30 1_555 0.236 -0.189 -0.122 -2.139 -12.988 1.092 14 R_U30:A37_R R 30 ? R 37 ? 20 1 1 B C 24 1_555 B G 29 1_555 0.762 -0.027 -0.224 -0.279 0.191 5.049 15 R_C31:G36_R R 31 ? R 36 ? 19 1 1 B A 41 1_555 B U 84 1_555 -4.424 -2.600 -0.254 12.584 2.221 -90.194 16 R_A48:U90_R R 48 ? R 90 ? 24 4 1 B G 43 1_555 B U 83 1_555 -2.376 -0.662 -0.137 2.746 -12.292 -2.779 17 R_G50:U89_R R 50 ? R 89 ? 28 1 1 B C 44 1_555 B G 82 1_555 0.467 -0.197 -0.322 7.735 -15.847 3.264 18 R_C51:G88_R R 51 ? R 88 ? 19 1 1 B C 45 1_555 B G 81 1_555 0.230 -0.135 0.278 -3.397 -4.998 0.967 19 R_C52:G87_R R 52 ? R 87 ? 19 1 1 B C 47 1_555 B G 80 1_555 -0.100 -0.198 -0.570 11.822 -12.209 0.786 20 R_C54:G86_R R 54 ? R 86 ? 19 1 1 B C 48 1_555 B G 79 1_555 -0.042 -0.257 -0.155 3.586 -6.165 -3.691 21 R_C55:G85_R R 55 ? R 85 ? 19 1 1 B G 49 1_555 B C 78 1_555 -0.139 -0.212 -0.020 4.121 -1.983 0.763 22 R_G56:C84_R R 56 ? R 84 ? 19 1 1 B G 50 1_555 B U 75 1_555 -2.027 -0.440 0.406 6.347 -4.325 -8.966 23 R_G57:U81_R R 57 ? R 81 ? 28 1 1 B C 51 1_555 B G 74 1_555 0.051 -0.048 -0.008 16.701 -20.580 1.862 24 R_C58:G80_R R 58 ? R 80 ? 19 1 1 B C 52 1_555 B G 73 1_555 0.553 -0.056 -0.099 3.881 -14.361 2.946 25 R_C59:G79_R R 59 ? R 79 ? 19 1 1 B U 53 1_555 B A 72 1_555 0.161 -0.139 0.232 -4.452 -13.466 1.274 26 R_U60:A78_R R 60 ? R 78 ? 20 1 1 B A 54 1_555 B U 71 1_555 0.732 -0.021 0.155 8.221 1.634 -6.137 27 R_A61:U77_R R 61 ? R 77 ? 20 1 1 B C 57 1_555 B G 70 1_555 0.978 0.146 -0.097 21.883 -29.411 5.064 28 R_C64:G76_R R 64 ? R 76 ? ? 1 1 B C 58 1_555 B G 69 1_555 0.944 -0.352 -0.083 10.549 -23.594 3.751 29 R_C65:G75_R R 65 ? R 75 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 4 1_555 B G 92 1_555 B A 5 1_555 B G 91 1_555 0.428 -2.426 3.519 9.217 12.145 32.389 -5.659 0.594 2.505 20.421 -15.498 35.711 1 RR_C11A12:G97G98_RR R 11 ? R 98 ? R 12 ? R 97 ? 1 B A 5 1_555 B G 91 1_555 B C 6 1_555 B G 88 1_555 2.455 -0.122 3.104 4.078 4.366 39.641 -0.669 -3.125 3.299 6.394 -5.972 40.070 2 RR_A12C13:G94G97_RR R 12 ? R 97 ? R 13 ? R 94 ? 1 B C 6 1_555 B G 88 1_555 B G 7 1_555 B C 87 1_555 -0.673 -0.645 2.681 -4.837 22.672 26.944 -3.647 0.554 1.739 40.450 8.630 35.403 3 RR_C13G14:C93G94_RR R 13 ? R 94 ? R 14 ? R 93 ? 1 B G 14 1_555 B C 39 1_555 B C 15 1_555 B G 38 1_555 0.258 -2.058 3.219 -4.333 0.963 29.738 -4.159 -1.357 3.084 1.863 8.384 30.060 4 RR_G21C22:G45C46_RR R 21 ? R 46 ? R 22 ? R 45 ? 1 B C 15 1_555 B G 38 1_555 B G 77 1_555 B C 37 1_555 -5.380 -0.140 3.253 -13.048 -7.670 57.340 0.317 4.671 4.266 -7.844 13.344 59.140 5 RR_C22G83:C44G45_RR R 22 ? R 45 ? R 83 ? R 44 ? 1 B A 18 1_555 B G 35 1_555 B C 19 1_555 B G 34 1_555 -0.267 -0.818 3.346 -4.757 8.089 63.014 -1.134 0.043 3.241 7.694 4.524 63.638 6 RR_A25C26:G41G42_RR R 25 ? R 42 ? R 26 ? R 41 ? 1 B C 19 1_555 B G 34 1_555 B C 20 1_555 B G 33 1_555 -0.222 -1.837 3.313 -1.933 9.260 30.082 -4.998 0.072 2.653 17.310 3.613 31.501 7 RR_C26C27:G40G41_RR R 26 ? R 41 ? R 27 ? R 40 ? 1 B C 20 1_555 B G 33 1_555 B A 21 1_555 B U 32 1_555 0.080 -1.637 3.244 0.485 14.526 30.588 -4.899 -0.068 2.258 25.787 -0.861 33.791 8 RR_C27A28:U39G40_RR R 27 ? R 40 ? R 28 ? R 39 ? 1 B A 21 1_555 B U 32 1_555 B U 22 1_555 B G 31 1_555 -0.012 -1.087 3.196 1.311 9.680 40.799 -2.470 0.145 2.874 13.650 -1.849 41.904 9 RR_A28U29:G38U39_RR R 28 ? R 39 ? R 29 ? R 38 ? 1 B U 22 1_555 B G 31 1_555 B U 23 1_555 B A 30 1_555 -0.046 -1.973 3.114 4.336 9.896 24.338 -6.465 1.054 2.124 22.131 -9.697 26.595 10 RR_U29U30:A37G38_RR R 29 ? R 38 ? R 30 ? R 37 ? 1 B U 23 1_555 B A 30 1_555 B C 24 1_555 B G 29 1_555 0.366 -1.598 3.289 0.336 4.970 32.450 -3.655 -0.592 3.021 8.828 -0.597 32.820 11 RR_U30C31:G36A37_RR R 30 ? R 37 ? R 31 ? R 36 ? 1 B A 41 1_555 B U 84 1_555 B G 43 1_555 B U 83 1_555 3.284 -2.153 3.488 -9.299 7.659 64.770 -2.286 -3.392 2.804 7.086 8.602 65.761 12 RR_A48G50:U89U90_RR R 48 ? R 90 ? R 50 ? R 89 ? 1 B G 43 1_555 B U 83 1_555 B C 44 1_555 B G 82 1_555 0.101 -1.404 3.146 -0.870 4.904 42.998 -2.353 -0.217 2.974 6.664 1.182 43.272 13 RR_G50C51:G88U89_RR R 50 ? R 89 ? R 51 ? R 88 ? 1 B C 44 1_555 B G 82 1_555 B C 45 1_555 B G 81 1_555 -0.048 -2.026 3.582 -2.096 8.024 31.388 -5.067 -0.290 2.983 14.516 3.792 32.438 14 RR_C51C52:G87G88_RR R 51 ? R 88 ? R 52 ? R 87 ? 1 B C 45 1_555 B G 81 1_555 B C 47 1_555 B G 80 1_555 -2.899 -1.103 2.945 11.172 3.889 51.636 -1.440 3.833 2.234 4.399 -12.637 52.883 15 RR_C52C54:G86G87_RR R 52 ? R 87 ? R 54 ? R 86 ? 1 B C 47 1_555 B G 80 1_555 B C 48 1_555 B G 79 1_555 -0.784 -2.216 3.547 -4.376 10.571 33.903 -5.143 0.644 2.828 17.520 7.253 35.728 16 RR_C54C55:G85G86_RR R 54 ? R 86 ? R 55 ? R 85 ? 1 B C 48 1_555 B G 79 1_555 B G 49 1_555 B C 78 1_555 -0.072 -1.955 3.240 -2.713 7.387 27.205 -5.564 -0.427 2.623 15.302 5.621 28.299 17 RR_C55G56:C84G85_RR R 55 ? R 85 ? R 56 ? R 84 ? 1 B G 49 1_555 B C 78 1_555 B G 50 1_555 B U 75 1_555 1.823 -2.057 2.870 -2.473 5.443 40.347 -3.445 -2.841 2.473 7.839 3.562 40.769 18 RR_G56G57:U81C84_RR R 56 ? R 84 ? R 57 ? R 81 ? 1 B G 50 1_555 B U 75 1_555 B C 51 1_555 B G 74 1_555 0.543 -1.168 3.089 0.710 3.641 42.169 -1.964 -0.685 2.991 5.048 -0.984 42.324 19 RR_G57C58:G80U81_RR R 57 ? R 81 ? R 58 ? R 80 ? 1 B C 51 1_555 B G 74 1_555 B C 52 1_555 B G 73 1_555 -0.453 -2.056 3.534 -2.539 8.870 31.137 -5.242 0.365 2.882 16.087 4.605 32.443 20 RR_C58C59:G79G80_RR R 58 ? R 80 ? R 59 ? R 79 ? 1 B C 52 1_555 B G 73 1_555 B U 53 1_555 B A 72 1_555 -0.467 -2.015 3.469 -1.544 11.390 27.824 -6.100 0.600 2.491 22.507 3.052 30.061 21 RR_C59U60:A78G79_RR R 59 ? R 79 ? R 60 ? R 78 ? 1 B U 53 1_555 B A 72 1_555 B A 54 1_555 B U 71 1_555 -0.395 -1.109 2.884 1.772 15.315 30.454 -3.857 0.901 2.080 27.084 -3.134 34.051 22 RR_U60A61:U77A78_RR R 60 ? R 78 ? R 61 ? R 77 ? 1 B A 54 1_555 B U 71 1_555 B C 57 1_555 B G 70 1_555 -4.730 0.556 3.260 3.330 -5.847 72.129 0.657 4.110 3.022 -4.955 -2.822 72.400 23 RR_A61C64:G76U77_RR R 61 ? R 77 ? R 64 ? R 76 ? 1 B C 57 1_555 B G 70 1_555 B C 58 1_555 B G 69 1_555 -0.116 -1.148 3.488 0.968 8.649 33.507 -3.297 0.348 3.100 14.696 -1.644 34.587 24 RR_C64C65:G75G76_RR R 64 ? R 76 ? R 65 ? R 75 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; C2E 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3IRW _pdbx_initial_refinement_model.details 'PDB entry 3IRW' #