data_3MY2 # _entry.id 3MY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3MY2 RCSB RCSB059137 WWPDB D_1000059137 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MY2 _pdbx_database_status.recvd_initial_deposition_date 2010-05-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tran, A.X.' 1 'Dong, C.' 2 'Whitfield, C.' 3 'Scottish Structural Proteomics Facility (SSPF)' 4 # _citation.id primary _citation.title ;Structure and functional analysis of LptC, a conserved membrane protein involved in the lipopolysaccharide export pathway in Escherichia coli. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 33529 _citation.page_last 33539 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20720015 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.144709 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tran, A.X.' 1 primary 'Dong, C.' 2 primary 'Whitfield, C.' 3 # _cell.entry_id 3MY2 _cell.length_a 94.210 _cell.length_b 94.210 _cell.length_c 60.440 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MY2 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lipopolysaccharide export system protein lptC' 20241.977 1 ? ? ? ? 2 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HHHHHHN(MSE)AEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIP TWSVKADKAKLTNDR(MSE)LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLK(MSE)R GNLRSKNAELIEKVRTSYEIQNKQTQP ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHNMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSV KADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIE KVRTSYEIQNKQTQP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 ASN n 1 8 MSE n 1 9 ALA n 1 10 GLU n 1 11 LYS n 1 12 ASP n 1 13 ASP n 1 14 THR n 1 15 ALA n 1 16 GLN n 1 17 VAL n 1 18 VAL n 1 19 VAL n 1 20 ASN n 1 21 ASN n 1 22 ASN n 1 23 ASP n 1 24 PRO n 1 25 THR n 1 26 TYR n 1 27 LYS n 1 28 SER n 1 29 GLU n 1 30 HIS n 1 31 THR n 1 32 ASP n 1 33 THR n 1 34 LEU n 1 35 VAL n 1 36 TYR n 1 37 ASN n 1 38 PRO n 1 39 GLU n 1 40 GLY n 1 41 ALA n 1 42 LEU n 1 43 SER n 1 44 TYR n 1 45 ARG n 1 46 LEU n 1 47 ILE n 1 48 ALA n 1 49 GLN n 1 50 HIS n 1 51 VAL n 1 52 GLU n 1 53 TYR n 1 54 TYR n 1 55 SER n 1 56 ASP n 1 57 GLN n 1 58 ALA n 1 59 VAL n 1 60 SER n 1 61 TRP n 1 62 PHE n 1 63 THR n 1 64 GLN n 1 65 PRO n 1 66 VAL n 1 67 LEU n 1 68 THR n 1 69 THR n 1 70 PHE n 1 71 ASP n 1 72 LYS n 1 73 ASP n 1 74 LYS n 1 75 ILE n 1 76 PRO n 1 77 THR n 1 78 TRP n 1 79 SER n 1 80 VAL n 1 81 LYS n 1 82 ALA n 1 83 ASP n 1 84 LYS n 1 85 ALA n 1 86 LYS n 1 87 LEU n 1 88 THR n 1 89 ASN n 1 90 ASP n 1 91 ARG n 1 92 MSE n 1 93 LEU n 1 94 TYR n 1 95 LEU n 1 96 TYR n 1 97 GLY n 1 98 HIS n 1 99 VAL n 1 100 GLU n 1 101 VAL n 1 102 ASN n 1 103 ALA n 1 104 LEU n 1 105 VAL n 1 106 PRO n 1 107 ASP n 1 108 SER n 1 109 GLN n 1 110 LEU n 1 111 ARG n 1 112 ARG n 1 113 ILE n 1 114 THR n 1 115 THR n 1 116 ASP n 1 117 ASN n 1 118 ALA n 1 119 GLN n 1 120 ILE n 1 121 ASN n 1 122 LEU n 1 123 VAL n 1 124 THR n 1 125 GLN n 1 126 ASP n 1 127 VAL n 1 128 THR n 1 129 SER n 1 130 GLU n 1 131 ASP n 1 132 LEU n 1 133 VAL n 1 134 THR n 1 135 LEU n 1 136 TYR n 1 137 GLY n 1 138 THR n 1 139 THR n 1 140 PHE n 1 141 ASN n 1 142 SER n 1 143 SER n 1 144 GLY n 1 145 LEU n 1 146 LYS n 1 147 MSE n 1 148 ARG n 1 149 GLY n 1 150 ASN n 1 151 LEU n 1 152 ARG n 1 153 SER n 1 154 LYS n 1 155 ASN n 1 156 ALA n 1 157 GLU n 1 158 LEU n 1 159 ILE n 1 160 GLU n 1 161 LYS n 1 162 VAL n 1 163 ARG n 1 164 THR n 1 165 SER n 1 166 TYR n 1 167 GLU n 1 168 ILE n 1 169 GLN n 1 170 ASN n 1 171 LYS n 1 172 GLN n 1 173 THR n 1 174 GLN n 1 175 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b3199, JW3166, lptC, yrbK' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'K12 substr. MG1655' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 511145 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Top10 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pBAD _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBAD24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LPTC_ECOLI _struct_ref.pdbx_db_accession P0ADV9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSY EIQNKQTQP ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MY2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0ADV9 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 191 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MY2 HIS A 1 ? UNP P0ADV9 ? ? 'EXPRESSION TAG' 17 1 1 3MY2 HIS A 2 ? UNP P0ADV9 ? ? 'EXPRESSION TAG' 18 2 1 3MY2 HIS A 3 ? UNP P0ADV9 ? ? 'EXPRESSION TAG' 19 3 1 3MY2 HIS A 4 ? UNP P0ADV9 ? ? 'EXPRESSION TAG' 20 4 1 3MY2 HIS A 5 ? UNP P0ADV9 ? ? 'EXPRESSION TAG' 21 5 1 3MY2 HIS A 6 ? UNP P0ADV9 ? ? 'EXPRESSION TAG' 22 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MY2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.05 _exptl_crystal.density_percent_sol 59.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.04 M K2SO4, 16% PEG8000, 20% glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-05-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9764 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9764 # _reflns.entry_id 3MY2 _reflns.observed_criterion_sigma_I 2.3 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 37 _reflns.d_resolution_high 2.2 _reflns.number_obs 14109 _reflns.number_all 14286 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.099 _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.26 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.604 _reflns_shell.pdbx_Rsym_value 0.709 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3MY2 _refine.ls_number_reflns_obs 13542 _refine.ls_number_reflns_all 14286 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.19606 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19466 _refine.ls_R_factor_R_free 0.22226 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 718 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 43.628 _refine.aniso_B[1][1] -1.83 _refine.aniso_B[2][2] -1.83 _refine.aniso_B[3][3] 3.66 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.151 _refine.pdbx_overall_ESU_R_Free 0.141 _refine.overall_SU_ML 0.106 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.626 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1018 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1089 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.022 ? 1037 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.056 1.959 ? 1407 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.280 5.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.042 24.800 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.937 15.000 ? 177 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.667 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.151 0.200 ? 167 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 763 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.186 0.200 ? 350 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.296 0.200 ? 702 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.139 0.200 ? 65 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.206 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.108 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.159 1.500 ? 630 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.218 2.000 ? 1024 'X-RAY DIFFRACTION' ? r_scbond_it 3.849 3.000 ? 407 'X-RAY DIFFRACTION' ? r_scangle_it 6.036 4.500 ? 381 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 970 _refine_ls_shell.R_factor_R_work 0.331 _refine_ls_shell.percent_reflns_obs 99.90 _refine_ls_shell.R_factor_R_free 0.360 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3MY2 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 3MY2 _struct.title 'Crystal structure of LptC' _struct.pdbx_descriptor 'Lipopolysaccharide export system protein lptC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MY2 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'LptC, lipopolysaccharide export pathway, Structural Genomics, Scottish Structural Proteomics Facility, SSPF, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 91 C ? ? ? 1_555 A MSE 92 N ? ? A ARG 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.356 ? covale2 covale ? ? A MSE 92 C ? ? ? 1_555 A LEU 93 N ? ? A MSE 108 A LEU 109 1_555 ? ? ? ? ? ? ? 1.509 ? covale3 covale ? ? A LYS 146 C ? ? ? 1_555 A MSE 147 N ? ? A LYS 162 A MSE 163 1_555 ? ? ? ? ? ? ? 1.409 ? covale4 covale ? ? A MSE 147 C ? ? ? 1_555 A ARG 148 N ? ? A MSE 163 A ARG 164 1_555 ? ? ? ? ? ? ? 1.370 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 44 ? ILE A 47 ? TYR A 60 ILE A 63 A 2 VAL A 66 ? PHE A 70 ? VAL A 82 PHE A 86 A 3 PRO A 76 ? LYS A 81 ? PRO A 92 LYS A 97 A 4 MSE A 92 ? ALA A 103 ? MSE A 108 ALA A 119 A 5 LYS A 84 ? LEU A 87 ? LYS A 100 LEU A 103 A 6 VAL A 59 ? THR A 63 ? VAL A 75 THR A 79 A 7 VAL A 51 ? TYR A 54 ? VAL A 67 TYR A 70 B 1 TYR A 44 ? ILE A 47 ? TYR A 60 ILE A 63 B 2 VAL A 66 ? PHE A 70 ? VAL A 82 PHE A 86 B 3 PRO A 76 ? LYS A 81 ? PRO A 92 LYS A 97 B 4 MSE A 92 ? ALA A 103 ? MSE A 108 ALA A 119 B 5 LEU A 110 ? ASN A 121 ? LEU A 126 ASN A 137 B 6 ASP A 126 ? GLY A 137 ? ASP A 142 GLY A 153 B 7 ASN A 141 ? ASN A 150 ? ASN A 157 ASN A 166 B 8 ASN A 155 ? THR A 164 ? ASN A 171 THR A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 45 ? N ARG A 61 O THR A 68 ? O THR A 84 A 2 3 N LEU A 67 ? N LEU A 83 O VAL A 80 ? O VAL A 96 A 3 4 N SER A 79 ? N SER A 95 O ASN A 102 ? O ASN A 118 A 4 5 O TYR A 94 ? O TYR A 110 N LYS A 86 ? N LYS A 102 A 5 6 O ALA A 85 ? O ALA A 101 N PHE A 62 ? N PHE A 78 A 6 7 O TRP A 61 ? O TRP A 77 N GLU A 52 ? N GLU A 68 B 1 2 N ARG A 45 ? N ARG A 61 O THR A 68 ? O THR A 84 B 2 3 N LEU A 67 ? N LEU A 83 O VAL A 80 ? O VAL A 96 B 3 4 N SER A 79 ? N SER A 95 O ASN A 102 ? O ASN A 118 B 4 5 N VAL A 101 ? N VAL A 117 O ILE A 113 ? O ILE A 129 B 5 6 N ARG A 112 ? N ARG A 128 O TYR A 136 ? O TYR A 152 B 6 7 N SER A 129 ? N SER A 145 O MSE A 147 ? O MSE A 163 B 7 8 N SER A 143 ? N SER A 159 O ARG A 163 ? O ARG A 179 # _database_PDB_matrix.entry_id 3MY2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MY2 _atom_sites.fract_transf_matrix[1][1] 0.010615 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010615 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016545 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 17 ? ? ? A . n A 1 2 HIS 2 18 ? ? ? A . n A 1 3 HIS 3 19 ? ? ? A . n A 1 4 HIS 4 20 ? ? ? A . n A 1 5 HIS 5 21 ? ? ? A . n A 1 6 HIS 6 22 ? ? ? A . n A 1 7 ASN 7 23 ? ? ? A . n A 1 8 MSE 8 24 ? ? ? A . n A 1 9 ALA 9 25 ? ? ? A . n A 1 10 GLU 10 26 ? ? ? A . n A 1 11 LYS 11 27 ? ? ? A . n A 1 12 ASP 12 28 ? ? ? A . n A 1 13 ASP 13 29 ? ? ? A . n A 1 14 THR 14 30 ? ? ? A . n A 1 15 ALA 15 31 ? ? ? A . n A 1 16 GLN 16 32 ? ? ? A . n A 1 17 VAL 17 33 ? ? ? A . n A 1 18 VAL 18 34 ? ? ? A . n A 1 19 VAL 19 35 ? ? ? A . n A 1 20 ASN 20 36 ? ? ? A . n A 1 21 ASN 21 37 ? ? ? A . n A 1 22 ASN 22 38 ? ? ? A . n A 1 23 ASP 23 39 ? ? ? A . n A 1 24 PRO 24 40 ? ? ? A . n A 1 25 THR 25 41 ? ? ? A . n A 1 26 TYR 26 42 ? ? ? A . n A 1 27 LYS 27 43 ? ? ? A . n A 1 28 SER 28 44 ? ? ? A . n A 1 29 GLU 29 45 ? ? ? A . n A 1 30 HIS 30 46 ? ? ? A . n A 1 31 THR 31 47 ? ? ? A . n A 1 32 ASP 32 48 ? ? ? A . n A 1 33 THR 33 49 ? ? ? A . n A 1 34 LEU 34 50 ? ? ? A . n A 1 35 VAL 35 51 ? ? ? A . n A 1 36 TYR 36 52 ? ? ? A . n A 1 37 ASN 37 53 ? ? ? A . n A 1 38 PRO 38 54 ? ? ? A . n A 1 39 GLU 39 55 ? ? ? A . n A 1 40 GLY 40 56 ? ? ? A . n A 1 41 ALA 41 57 ? ? ? A . n A 1 42 LEU 42 58 ? ? ? A . n A 1 43 SER 43 59 59 SER SER A . n A 1 44 TYR 44 60 60 TYR TYR A . n A 1 45 ARG 45 61 61 ARG ARG A . n A 1 46 LEU 46 62 62 LEU LEU A . n A 1 47 ILE 47 63 63 ILE ILE A . n A 1 48 ALA 48 64 64 ALA ALA A . n A 1 49 GLN 49 65 65 GLN GLN A . n A 1 50 HIS 50 66 66 HIS HIS A . n A 1 51 VAL 51 67 67 VAL VAL A . n A 1 52 GLU 52 68 68 GLU GLU A . n A 1 53 TYR 53 69 69 TYR TYR A . n A 1 54 TYR 54 70 70 TYR TYR A . n A 1 55 SER 55 71 71 SER SER A . n A 1 56 ASP 56 72 72 ASP ASP A . n A 1 57 GLN 57 73 73 GLN GLN A . n A 1 58 ALA 58 74 74 ALA ALA A . n A 1 59 VAL 59 75 75 VAL VAL A . n A 1 60 SER 60 76 76 SER SER A . n A 1 61 TRP 61 77 77 TRP TRP A . n A 1 62 PHE 62 78 78 PHE PHE A . n A 1 63 THR 63 79 79 THR THR A . n A 1 64 GLN 64 80 80 GLN GLN A . n A 1 65 PRO 65 81 81 PRO PRO A . n A 1 66 VAL 66 82 82 VAL VAL A . n A 1 67 LEU 67 83 83 LEU LEU A . n A 1 68 THR 68 84 84 THR THR A . n A 1 69 THR 69 85 85 THR THR A . n A 1 70 PHE 70 86 86 PHE PHE A . n A 1 71 ASP 71 87 87 ASP ASP A . n A 1 72 LYS 72 88 88 LYS LYS A . n A 1 73 ASP 73 89 89 ASP ASP A . n A 1 74 LYS 74 90 90 LYS LYS A . n A 1 75 ILE 75 91 91 ILE ILE A . n A 1 76 PRO 76 92 92 PRO PRO A . n A 1 77 THR 77 93 93 THR THR A . n A 1 78 TRP 78 94 94 TRP TRP A . n A 1 79 SER 79 95 95 SER SER A . n A 1 80 VAL 80 96 96 VAL VAL A . n A 1 81 LYS 81 97 97 LYS LYS A . n A 1 82 ALA 82 98 98 ALA ALA A . n A 1 83 ASP 83 99 99 ASP ASP A . n A 1 84 LYS 84 100 100 LYS LYS A . n A 1 85 ALA 85 101 101 ALA ALA A . n A 1 86 LYS 86 102 102 LYS LYS A . n A 1 87 LEU 87 103 103 LEU LEU A . n A 1 88 THR 88 104 104 THR THR A . n A 1 89 ASN 89 105 105 ASN ASN A . n A 1 90 ASP 90 106 106 ASP ASP A . n A 1 91 ARG 91 107 107 ARG ARG A . n A 1 92 MSE 92 108 108 MSE MSE A . n A 1 93 LEU 93 109 109 LEU LEU A . n A 1 94 TYR 94 110 110 TYR TYR A . n A 1 95 LEU 95 111 111 LEU LEU A . n A 1 96 TYR 96 112 112 TYR TYR A . n A 1 97 GLY 97 113 113 GLY GLY A . n A 1 98 HIS 98 114 114 HIS HIS A . n A 1 99 VAL 99 115 115 VAL VAL A . n A 1 100 GLU 100 116 116 GLU GLU A . n A 1 101 VAL 101 117 117 VAL VAL A . n A 1 102 ASN 102 118 118 ASN ASN A . n A 1 103 ALA 103 119 119 ALA ALA A . n A 1 104 LEU 104 120 120 LEU LEU A . n A 1 105 VAL 105 121 121 VAL VAL A . n A 1 106 PRO 106 122 122 PRO PRO A . n A 1 107 ASP 107 123 123 ASP ASP A . n A 1 108 SER 108 124 124 SER SER A . n A 1 109 GLN 109 125 125 GLN GLN A . n A 1 110 LEU 110 126 126 LEU LEU A . n A 1 111 ARG 111 127 127 ARG ARG A . n A 1 112 ARG 112 128 128 ARG ARG A . n A 1 113 ILE 113 129 129 ILE ILE A . n A 1 114 THR 114 130 130 THR THR A . n A 1 115 THR 115 131 131 THR THR A . n A 1 116 ASP 116 132 132 ASP ASP A . n A 1 117 ASN 117 133 133 ASN ASN A . n A 1 118 ALA 118 134 134 ALA ALA A . n A 1 119 GLN 119 135 135 GLN GLN A . n A 1 120 ILE 120 136 136 ILE ILE A . n A 1 121 ASN 121 137 137 ASN ASN A . n A 1 122 LEU 122 138 138 LEU LEU A . n A 1 123 VAL 123 139 139 VAL VAL A . n A 1 124 THR 124 140 140 THR THR A . n A 1 125 GLN 125 141 141 GLN GLN A . n A 1 126 ASP 126 142 142 ASP ASP A . n A 1 127 VAL 127 143 143 VAL VAL A . n A 1 128 THR 128 144 144 THR THR A . n A 1 129 SER 129 145 145 SER SER A . n A 1 130 GLU 130 146 146 GLU GLU A . n A 1 131 ASP 131 147 147 ASP ASP A . n A 1 132 LEU 132 148 148 LEU LEU A . n A 1 133 VAL 133 149 149 VAL VAL A . n A 1 134 THR 134 150 150 THR THR A . n A 1 135 LEU 135 151 151 LEU LEU A . n A 1 136 TYR 136 152 152 TYR TYR A . n A 1 137 GLY 137 153 153 GLY GLY A . n A 1 138 THR 138 154 154 THR THR A . n A 1 139 THR 139 155 155 THR THR A . n A 1 140 PHE 140 156 156 PHE PHE A . n A 1 141 ASN 141 157 157 ASN ASN A . n A 1 142 SER 142 158 158 SER SER A . n A 1 143 SER 143 159 159 SER SER A . n A 1 144 GLY 144 160 160 GLY GLY A . n A 1 145 LEU 145 161 161 LEU LEU A . n A 1 146 LYS 146 162 162 LYS LYS A . n A 1 147 MSE 147 163 163 MSE MSE A . n A 1 148 ARG 148 164 164 ARG ARG A . n A 1 149 GLY 149 165 165 GLY GLY A . n A 1 150 ASN 150 166 166 ASN ASN A . n A 1 151 LEU 151 167 167 LEU LEU A . n A 1 152 ARG 152 168 168 ARG ARG A . n A 1 153 SER 153 169 169 SER SER A . n A 1 154 LYS 154 170 170 LYS LYS A . n A 1 155 ASN 155 171 171 ASN ASN A . n A 1 156 ALA 156 172 172 ALA ALA A . n A 1 157 GLU 157 173 173 GLU GLU A . n A 1 158 LEU 158 174 174 LEU LEU A . n A 1 159 ILE 159 175 175 ILE ILE A . n A 1 160 GLU 160 176 176 GLU GLU A . n A 1 161 LYS 161 177 177 LYS LYS A . n A 1 162 VAL 162 178 178 VAL VAL A . n A 1 163 ARG 163 179 179 ARG ARG A . n A 1 164 THR 164 180 180 THR THR A . n A 1 165 SER 165 181 181 SER SER A . n A 1 166 TYR 166 182 182 TYR TYR A . n A 1 167 GLU 167 183 183 GLU GLU A . n A 1 168 ILE 168 184 184 ILE ILE A . n A 1 169 GLN 169 185 ? ? ? A . n A 1 170 ASN 170 186 ? ? ? A . n A 1 171 LYS 171 187 ? ? ? A . n A 1 172 GLN 172 188 ? ? ? A . n A 1 173 THR 173 189 ? ? ? A . n A 1 174 GLN 174 190 ? ? ? A . n A 1 175 PRO 175 191 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Scottish Structural Proteomics Facility' _pdbx_SG_project.initial_of_center SSPF # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 92 A MSE 108 ? MET SELENOMETHIONINE 2 A MSE 147 A MSE 163 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1390 ? 2 MORE -6 ? 2 'SSA (A^2)' 13870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-01 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.0241 27.7632 1.0721 0.0317 0.0328 0.0517 -0.0123 -0.0053 0.0028 4.6171 4.0561 1.6022 -3.1588 -0.9792 0.9829 -0.0776 -0.1199 0.1550 0.0568 0.0699 -0.1966 -0.1620 0.0382 0.0076 'X-RAY DIFFRACTION' 2 ? refined -0.4265 27.4513 0.2134 0.1241 0.1518 0.1328 -0.0308 -0.0042 0.0034 3.0979 2.3028 1.7435 -2.0014 0.0868 -0.0985 -0.0709 -0.0404 0.0376 0.0583 0.0764 0.0844 0.0112 -0.0354 -0.0055 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 59 ? ? A 184 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 192 ? ? A 262 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SOLVE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A MSE 108 ? ? N A LEU 109 ? ? 1.509 1.336 0.173 0.023 Y 2 1 CD A ARG 179 ? ? NE A ARG 179 ? ? 1.284 1.460 -0.176 0.017 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 107 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 107 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MSE _pdbx_validate_rmsd_angle.auth_seq_id_3 108 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 108.32 _pdbx_validate_rmsd_angle.angle_target_value 122.70 _pdbx_validate_rmsd_angle.angle_deviation -14.38 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 65 ? ? -85.04 -118.68 2 1 GLN A 65 ? ? -89.98 -114.02 3 1 LYS A 162 ? ? 75.95 158.88 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ARG A 107 ? ? -14.46 2 1 MSE A 108 ? ? 17.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 90 ? CG ? A LYS 74 CG 2 1 Y 0 A LYS 90 ? CD ? A LYS 74 CD 3 1 Y 0 A LYS 90 ? CE ? A LYS 74 CE 4 1 Y 0 A LYS 90 ? NZ ? A LYS 74 NZ 5 1 Y 0 A ARG 179 ? NE ? A ARG 163 NE 6 1 Y 0 A ARG 179 ? CZ ? A ARG 163 CZ 7 1 Y 0 A ARG 179 ? NH1 ? A ARG 163 NH1 8 1 Y 0 A ARG 179 ? NH2 ? A ARG 163 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 17 ? A HIS 1 2 1 Y 1 A HIS 18 ? A HIS 2 3 1 Y 1 A HIS 19 ? A HIS 3 4 1 Y 1 A HIS 20 ? A HIS 4 5 1 Y 1 A HIS 21 ? A HIS 5 6 1 Y 1 A HIS 22 ? A HIS 6 7 1 Y 1 A ASN 23 ? A ASN 7 8 1 Y 1 A MSE 24 ? A MSE 8 9 1 Y 1 A ALA 25 ? A ALA 9 10 1 Y 1 A GLU 26 ? A GLU 10 11 1 Y 1 A LYS 27 ? A LYS 11 12 1 Y 1 A ASP 28 ? A ASP 12 13 1 Y 1 A ASP 29 ? A ASP 13 14 1 Y 1 A THR 30 ? A THR 14 15 1 Y 1 A ALA 31 ? A ALA 15 16 1 Y 1 A GLN 32 ? A GLN 16 17 1 Y 1 A VAL 33 ? A VAL 17 18 1 Y 1 A VAL 34 ? A VAL 18 19 1 Y 1 A VAL 35 ? A VAL 19 20 1 Y 1 A ASN 36 ? A ASN 20 21 1 Y 1 A ASN 37 ? A ASN 21 22 1 Y 1 A ASN 38 ? A ASN 22 23 1 Y 1 A ASP 39 ? A ASP 23 24 1 Y 1 A PRO 40 ? A PRO 24 25 1 Y 1 A THR 41 ? A THR 25 26 1 Y 1 A TYR 42 ? A TYR 26 27 1 Y 1 A LYS 43 ? A LYS 27 28 1 Y 1 A SER 44 ? A SER 28 29 1 Y 1 A GLU 45 ? A GLU 29 30 1 Y 1 A HIS 46 ? A HIS 30 31 1 Y 1 A THR 47 ? A THR 31 32 1 Y 1 A ASP 48 ? A ASP 32 33 1 Y 1 A THR 49 ? A THR 33 34 1 Y 1 A LEU 50 ? A LEU 34 35 1 Y 1 A VAL 51 ? A VAL 35 36 1 Y 1 A TYR 52 ? A TYR 36 37 1 Y 1 A ASN 53 ? A ASN 37 38 1 Y 1 A PRO 54 ? A PRO 38 39 1 Y 1 A GLU 55 ? A GLU 39 40 1 Y 1 A GLY 56 ? A GLY 40 41 1 Y 1 A ALA 57 ? A ALA 41 42 1 Y 1 A LEU 58 ? A LEU 42 43 1 Y 1 A GLN 185 ? A GLN 169 44 1 Y 1 A ASN 186 ? A ASN 170 45 1 Y 1 A LYS 187 ? A LYS 171 46 1 Y 1 A GLN 188 ? A GLN 172 47 1 Y 1 A THR 189 ? A THR 173 48 1 Y 1 A GLN 190 ? A GLN 174 49 1 Y 1 A PRO 191 ? A PRO 175 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 192 1 HOH HOH A . B 2 HOH 2 193 2 HOH HOH A . B 2 HOH 3 194 3 HOH HOH A . B 2 HOH 4 195 4 HOH HOH A . B 2 HOH 5 196 5 HOH HOH A . B 2 HOH 6 197 6 HOH HOH A . B 2 HOH 7 198 7 HOH HOH A . B 2 HOH 8 199 8 HOH HOH A . B 2 HOH 9 200 9 HOH HOH A . B 2 HOH 10 201 10 HOH HOH A . B 2 HOH 11 202 11 HOH HOH A . B 2 HOH 12 203 13 HOH HOH A . B 2 HOH 13 204 14 HOH HOH A . B 2 HOH 14 205 15 HOH HOH A . B 2 HOH 15 206 17 HOH HOH A . B 2 HOH 16 207 19 HOH HOH A . B 2 HOH 17 208 20 HOH HOH A . B 2 HOH 18 209 21 HOH HOH A . B 2 HOH 19 210 22 HOH HOH A . B 2 HOH 20 211 23 HOH HOH A . B 2 HOH 21 212 25 HOH HOH A . B 2 HOH 22 213 26 HOH HOH A . B 2 HOH 23 214 27 HOH HOH A . B 2 HOH 24 215 29 HOH HOH A . B 2 HOH 25 216 30 HOH HOH A . B 2 HOH 26 217 31 HOH HOH A . B 2 HOH 27 218 32 HOH HOH A . B 2 HOH 28 219 35 HOH HOH A . B 2 HOH 29 220 36 HOH HOH A . B 2 HOH 30 221 37 HOH HOH A . B 2 HOH 31 222 39 HOH HOH A . B 2 HOH 32 223 40 HOH HOH A . B 2 HOH 33 224 43 HOH HOH A . B 2 HOH 34 225 44 HOH HOH A . B 2 HOH 35 226 45 HOH HOH A . B 2 HOH 36 227 47 HOH HOH A . B 2 HOH 37 228 49 HOH HOH A . B 2 HOH 38 229 50 HOH HOH A . B 2 HOH 39 230 51 HOH HOH A . B 2 HOH 40 231 53 HOH HOH A . B 2 HOH 41 232 54 HOH HOH A . B 2 HOH 42 233 55 HOH HOH A . B 2 HOH 43 234 56 HOH HOH A . B 2 HOH 44 235 57 HOH HOH A . B 2 HOH 45 236 59 HOH HOH A . B 2 HOH 46 237 60 HOH HOH A . B 2 HOH 47 238 61 HOH HOH A . B 2 HOH 48 239 62 HOH HOH A . B 2 HOH 49 240 63 HOH HOH A . B 2 HOH 50 241 64 HOH HOH A . B 2 HOH 51 242 65 HOH HOH A . B 2 HOH 52 243 66 HOH HOH A . B 2 HOH 53 244 70 HOH HOH A . B 2 HOH 54 245 71 HOH HOH A . B 2 HOH 55 246 72 HOH HOH A . B 2 HOH 56 247 74 HOH HOH A . B 2 HOH 57 248 75 HOH HOH A . B 2 HOH 58 249 76 HOH HOH A . B 2 HOH 59 250 77 HOH HOH A . B 2 HOH 60 251 79 HOH HOH A . B 2 HOH 61 252 80 HOH HOH A . B 2 HOH 62 253 82 HOH HOH A . B 2 HOH 63 254 83 HOH HOH A . B 2 HOH 64 255 84 HOH HOH A . B 2 HOH 65 256 85 HOH HOH A . B 2 HOH 66 257 86 HOH HOH A . B 2 HOH 67 258 87 HOH HOH A . B 2 HOH 68 259 96 HOH HOH A . B 2 HOH 69 260 103 HOH HOH A . B 2 HOH 70 261 109 HOH HOH A . B 2 HOH 71 262 115 HOH HOH A . #