HEADER STRUCTURAL PROTEIN 10-MAY-10 3MYH TITLE INSIGHTS INTO THE IMPORTANCE OF HYDROGEN BONDING IN THE GAMMA- TITLE 2 PHOSPHATE BINDING POCKET OF MYOSIN: STRUCTURAL AND FUNCTIONAL STUDIES TITLE 3 OF SER236 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-2 HEAVY CHAIN; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: MYOSIN II HEAVY CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: DDB_G0286355, MHCA; SOURCE 6 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 44689; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORF+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDXA KEYWDS S1DC, MYOSIN, S236A, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.J.FRYE,V.A.KLENCHIN,C.R.BAGSHAW,I.RAYMENT REVDAT 4 06-SEP-23 3MYH 1 REMARK SEQADV HETSYN LINK REVDAT 3 14-SEP-11 3MYH 1 HET HETATM HETNAM HETSYN REVDAT 3 2 1 REMARK VERSN REVDAT 2 23-JUN-10 3MYH 1 JRNL REVDAT 1 26-MAY-10 3MYH 0 JRNL AUTH J.J.FRYE,V.A.KLENCHIN,C.R.BAGSHAW,I.RAYMENT JRNL TITL INSIGHTS INTO THE IMPORTANCE OF HYDROGEN BONDING IN THE JRNL TITL 2 GAMMA-PHOSPHATE BINDING POCKET OF MYOSIN: STRUCTURAL AND JRNL TITL 3 FUNCTIONAL STUDIES OF SERINE 236 JRNL REF BIOCHEMISTRY V. 49 4897 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20459085 JRNL DOI 10.1021/BI1001344 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 61007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5816 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7880 ; 1.980 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.174 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;38.292 ;24.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1012 ;16.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 866 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4430 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3542 ; 1.204 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5714 ; 2.032 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2274 ; 3.267 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2158 ; 4.959 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97885 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : 3.3 UNDULATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : 0.23700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8K, 250MM MGCL2, 100MM MOPS, REMARK 280 2MM ADP, 3MM SODIUM VANADATE, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.21500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.22000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.21500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.22000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.88000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.21500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.22000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.88000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.21500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.22000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 1 REMARK 465 ASN X 203 REMARK 465 GLN X 204 REMARK 465 ALA X 205 REMARK 465 ASN X 206 REMARK 465 GLY X 207 REMARK 465 SER X 208 REMARK 465 PHE X 701 REMARK 465 VAL X 702 REMARK 465 LYS X 703 REMARK 465 ARG X 704 REMARK 465 TYR X 705 REMARK 465 TYR X 706 REMARK 465 LEU X 707 REMARK 465 LEU X 708 REMARK 465 ALA X 709 REMARK 465 PRO X 710 REMARK 465 ASN X 711 REMARK 465 VAL X 712 REMARK 465 PRO X 713 REMARK 465 ARG X 714 REMARK 465 ASP X 715 REMARK 465 ALA X 716 REMARK 465 GLU X 717 REMARK 465 ASP X 718 REMARK 465 SER X 719 REMARK 465 GLN X 720 REMARK 465 LYS X 721 REMARK 465 ALA X 722 REMARK 465 THR X 723 REMARK 465 ASP X 724 REMARK 465 ALA X 725 REMARK 465 VAL X 726 REMARK 465 LEU X 727 REMARK 465 LYS X 728 REMARK 465 HIS X 729 REMARK 465 LEU X 730 REMARK 465 ASN X 731 REMARK 465 ILE X 732 REMARK 465 ALA X 748 REMARK 465 GLY X 749 REMARK 465 GLN X 750 REMARK 465 LEU X 751 REMARK 465 ALA X 752 REMARK 465 ARG X 753 REMARK 465 ILE X 754 REMARK 465 GLU X 755 REMARK 465 GLU X 756 REMARK 465 ALA X 757 REMARK 465 ARG X 758 REMARK 465 GLU X 759 REMARK 465 LEU X 760 REMARK 465 PRO X 761 REMARK 465 ASN X 762 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE X 4 CD1 REMARK 470 ARG X 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS X 13 CE NZ REMARK 470 LYS X 26 CD CE NZ REMARK 470 ASP X 31 CG OD1 OD2 REMARK 470 LYS X 42 CD CE NZ REMARK 470 ARG X 44 CD NE CZ NH1 NH2 REMARK 470 ARG X 131 CD NE CZ NH1 NH2 REMARK 470 LYS X 144 CE NZ REMARK 470 ARG X 170 NE CZ NH1 NH2 REMARK 470 VAL X 210 CG2 REMARK 470 GLU X 292 CG CD OE1 OE2 REMARK 470 LYS X 293 CE NZ REMARK 470 LYS X 316 CG CD CE NZ REMARK 470 LYS X 462 NZ REMARK 470 LYS X 498 CD CE NZ REMARK 470 ARG X 520 CG CD NE CZ NH1 NH2 REMARK 470 GLN X 521 CG CD OE1 NE2 REMARK 470 LYS X 553 NZ REMARK 470 LYS X 554 NZ REMARK 470 LYS X 622 CD CE NZ REMARK 470 LYS X 623 CG CD CE NZ REMARK 470 PHE X 627 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU X 646 CD OE1 OE2 REMARK 470 ILE X 697 CD1 REMARK 470 ALA X 699 CB REMARK 470 GLU X 735 OE1 REMARK 470 TYR X 737 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG X 738 CG CD NE CZ NH1 NH2 REMARK 470 PHE X 739 CD1 CD2 CE1 CE2 CZ REMARK 470 PHE X 746 CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 796 O HOH X 1075 1.77 REMARK 500 O HOH X 1014 O HOH X 1075 1.82 REMARK 500 CE MET X 342 O HOH X 1052 1.83 REMARK 500 ND2 ASN X 219 O HOH X 1047 1.95 REMARK 500 NE2 GLN X 480 CB SER X 510 1.96 REMARK 500 O HOH X 833 O HOH X 1070 2.07 REMARK 500 CE1 HIS X 297 O HOH X 991 2.13 REMARK 500 NH1 ARG X 232 O HOH X 955 2.15 REMARK 500 OE2 GLU X 567 O HOH X 1009 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 888 O HOH X 951 3655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE X 242 CZ PHE X 242 CE2 0.116 REMARK 500 GLU X 668 CG GLU X 668 CD 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN X 68 172.31 -48.20 REMARK 500 THR X 274 -17.40 75.49 REMARK 500 ALA X 299 -144.74 -131.82 REMARK 500 LYS X 316 117.55 -39.85 REMARK 500 SER X 465 -163.69 -120.34 REMARK 500 ASN X 500 83.07 56.34 REMARK 500 ALA X 699 108.80 96.01 REMARK 500 PRO X 734 -120.21 -110.99 REMARK 500 GLU X 735 -71.10 -111.09 REMARK 500 TYR X 737 123.34 91.08 REMARK 500 THR X 742 -5.51 -144.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 997 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR X 186 OG1 REMARK 620 2 SER X 237 OG 87.9 REMARK 620 3 HOH X 780 O 88.2 90.6 REMARK 620 4 HOH X 787 O 88.9 86.7 176.1 REMARK 620 5 VO4 X 998 O1 172.3 85.0 94.8 87.7 REMARK 620 6 ADP X 999 O1B 89.8 173.3 95.6 87.0 96.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 X 998 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP X 999 O3B REMARK 620 2 VO4 X 998 O1 93.9 REMARK 620 3 VO4 X 998 O2 86.1 117.8 REMARK 620 4 VO4 X 998 O3 88.8 121.4 120.8 REMARK 620 5 VO4 X 998 O4 178.8 87.3 93.5 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 X 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP X 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BIT X 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MYK RELATED DB: PDB REMARK 900 RELATED ID: 3MYL RELATED DB: PDB DBREF 3MYH X 2 759 UNP P08799 MYS2_DICDI 2 759 SEQADV 3MYH GLY X 1 UNP P08799 EXPRESSION TAG SEQADV 3MYH ALA X 236 UNP P08799 SER 236 ENGINEERED MUTATION SEQADV 3MYH LEU X 760 UNP P08799 EXPRESSION TAG SEQADV 3MYH PRO X 761 UNP P08799 EXPRESSION TAG SEQADV 3MYH ASN X 762 UNP P08799 EXPRESSION TAG SEQRES 1 X 762 GLY ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS SEQRES 2 X 762 TYR LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS SEQRES 3 X 762 LEU THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO SEQRES 4 X 762 ASP PRO LYS GLU ARG ASP SER TYR GLU CYS GLY GLU ILE SEQRES 5 X 762 VAL SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL SEQRES 6 X 762 ASP GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN SEQRES 7 X 762 GLN ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SEQRES 8 X 762 SER GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS SEQRES 9 X 762 ASN LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR SEQRES 10 X 762 TYR SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS SEQRES 11 X 762 ARG ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE SEQRES 12 X 762 LYS GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE SEQRES 13 X 762 ALA ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP SEQRES 14 X 762 ARG GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY SEQRES 15 X 762 ALA GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR SEQRES 16 X 762 LEU ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER SEQRES 17 X 762 GLY VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE SEQRES 18 X 762 LEU GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN SEQRES 19 X 762 ASN ALA SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE SEQRES 20 X 762 ASN SER ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER SEQRES 21 X 762 TYR LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU SEQRES 22 X 762 THR GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA SEQRES 23 X 762 GLY ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA SEQRES 24 X 762 GLY PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS SEQRES 25 X 762 VAL ASP ILE LYS GLY VAL SER ASP SER GLU GLU PHE LYS SEQRES 26 X 762 ILE THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN SEQRES 27 X 762 GLU GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE SEQRES 28 X 762 LEU HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY SEQRES 29 X 762 GLU GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA SEQRES 30 X 762 ALA SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU SEQRES 31 X 762 LYS ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP SEQRES 32 X 762 LEU VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SEQRES 33 X 762 SER ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU SEQRES 34 X 762 PHE LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS SEQRES 35 X 762 GLN GLU ARG LYS ALA TYR PHE ILE GLY VAL LEU ASP ILE SEQRES 36 X 762 SER GLY PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN SEQRES 37 X 762 LEU CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE SEQRES 38 X 762 PHE ASN HIS HIS MET PHE LYS LEU GLU GLN GLU GLU TYR SEQRES 39 X 762 LEU LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY SEQRES 40 X 762 LEU ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG SEQRES 41 X 762 GLN PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER SEQRES 42 X 762 VAL PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS SEQRES 43 X 762 LEU HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU SEQRES 44 X 762 GLU PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS SEQRES 45 X 762 TYR ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU SEQRES 46 X 762 GLU LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU SEQRES 47 X 762 CYS PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU SEQRES 48 X 762 PHE ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY SEQRES 49 X 762 ALA ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN SEQRES 50 X 762 LEU ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO SEQRES 51 X 762 HIS PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU SEQRES 52 X 762 PRO ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU SEQRES 53 X 762 ARG CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG SEQRES 54 X 762 LYS GLY PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL SEQRES 55 X 762 LYS ARG TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP SEQRES 56 X 762 ALA GLU ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS SEQRES 57 X 762 HIS LEU ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE SEQRES 58 X 762 THR LYS ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE SEQRES 59 X 762 GLU GLU ALA ARG GLU LEU PRO ASN HET MG X 997 1 HET VO4 X 998 5 HET ADP X 999 27 HET BIT X 800 22 HETNAM MG MAGNESIUM ION HETNAM VO4 VANADATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BIT (-)-1-PHENYL-1,2,3,4-TETRAHYDRO-4-HYDROXYPYRROLO[2,3- HETNAM 2 BIT B]-7-METHYLQUINOLIN-4-ONE HETSYN BIT (S)-BLEBBISTATIN; (3AS)-3A-HYDROXY-6-METHYL-1-PHENYL-3, HETSYN 2 BIT 3A-DIHYDRO-1H-PYRROLO[2,3-B]QUINOLIN-4(2H)-ONE FORMUL 2 MG MG 2+ FORMUL 3 VO4 O4 V 3- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 BIT C18 H16 N2 O2 FORMUL 6 HOH *351(H2 O) HELIX 1 1 SER X 9 LYS X 16 1 8 HELIX 2 2 ASP X 21 SER X 30 1 10 HELIX 3 3 ASP X 75 ALA X 77 5 3 HELIX 4 4 PRO X 82 ASP X 86 5 5 HELIX 5 5 ASP X 90 LEU X 94 5 5 HELIX 6 6 ASN X 98 GLN X 112 1 15 HELIX 7 7 THR X 136 LYS X 144 1 9 HELIX 8 8 ARG X 147 VAL X 151 5 5 HELIX 9 9 HIS X 154 ARG X 170 1 17 HELIX 10 10 GLY X 184 ALA X 200 1 17 HELIX 11 11 GLY X 209 GLY X 226 1 18 HELIX 12 12 LYS X 265 PHE X 270 1 6 HELIX 13 13 TYR X 278 ALA X 288 1 11 HELIX 14 14 THR X 289 LEU X 296 1 8 HELIX 15 15 GLY X 300 PHE X 304 5 5 HELIX 16 16 SER X 319 GLY X 335 1 17 HELIX 17 17 SER X 337 ILE X 357 1 21 HELIX 18 18 LYS X 372 GLY X 383 1 12 HELIX 19 19 ASN X 385 GLU X 395 1 11 HELIX 20 20 ASN X 410 CYS X 442 1 33 HELIX 21 21 SER X 465 PHE X 487 1 23 HELIX 22 22 PHE X 487 LYS X 498 1 12 HELIX 23 23 SER X 510 GLY X 519 1 10 HELIX 24 24 GLY X 524 VAL X 534 1 11 HELIX 25 25 THR X 539 SER X 552 1 14 HELIX 26 26 ASP X 583 ASP X 590 1 8 HELIX 27 27 GLN X 593 ASP X 602 1 10 HELIX 28 28 ASP X 605 ASP X 614 1 10 HELIX 29 29 ASP X 614 SER X 619 1 6 HELIX 30 30 THR X 629 THR X 647 1 19 HELIX 31 31 GLU X 668 GLY X 680 1 13 HELIX 32 32 GLY X 680 GLY X 691 1 12 SHEET 1 A 5 ASP X 69 LYS X 73 0 SHEET 2 A 5 SER X 59 LYS X 63 -1 N PHE X 62 O ARG X 70 SHEET 3 A 5 GLU X 48 GLU X 55 -1 N VAL X 53 O THR X 61 SHEET 4 A 5 TYR X 34 TYR X 37 -1 N ILE X 35 O GLY X 50 SHEET 5 A 5 ASN X 78 GLN X 79 -1 O ASN X 78 N TRP X 36 SHEET 1 B 7 TYR X 116 SER X 119 0 SHEET 2 B 7 PHE X 122 VAL X 126 -1 O PHE X 122 N SER X 119 SHEET 3 B 7 ASN X 649 ILE X 656 1 O ARG X 654 N LEU X 123 SHEET 4 B 7 GLN X 173 THR X 178 1 N LEU X 176 O HIS X 651 SHEET 5 B 7 TYR X 448 ASP X 454 1 O GLY X 451 N LEU X 175 SHEET 6 B 7 LYS X 241 PHE X 247 -1 N ILE X 245 O ILE X 450 SHEET 7 B 7 ILE X 253 SER X 260 -1 O GLY X 255 N GLN X 246 SHEET 1 C 2 ASN X 227 ALA X 228 0 SHEET 2 C 2 ALA X 236 SER X 237 -1 O ALA X 236 N ALA X 228 SHEET 1 D 2 GLU X 360 LYS X 361 0 SHEET 2 D 2 ALA X 367 VAL X 368 -1 O VAL X 368 N GLU X 360 SHEET 1 E 2 ARG X 397 ALA X 400 0 SHEET 2 E 2 ASP X 403 ALA X 406 -1 O VAL X 405 N ILE X 398 SHEET 1 F 3 TYR X 558 GLU X 559 0 SHEET 2 F 3 GLU X 567 HIS X 572 -1 O GLY X 569 N GLU X 559 SHEET 3 F 3 GLY X 575 GLU X 580 -1 O TYR X 579 N PHE X 568 SHEET 1 G 2 LYS X 622 LYS X 623 0 SHEET 2 G 2 ASN X 626 PHE X 627 -1 O ASN X 626 N LYS X 623 SHEET 1 H 3 ASN X 694 ILE X 697 0 SHEET 2 H 3 LYS X 743 PHE X 746 -1 O PHE X 746 N ASN X 694 SHEET 3 H 3 ARG X 738 PHE X 739 -1 N ARG X 738 O PHE X 745 SSBOND 1 CYS X 442 CYS X 442 1555 3555 2.23 LINK OG1 THR X 186 MG MG X 997 1555 1555 2.06 LINK OG SER X 237 MG MG X 997 1555 1555 2.17 LINK O HOH X 780 MG MG X 997 1555 1555 2.02 LINK O HOH X 787 MG MG X 997 1555 1555 2.04 LINK MG MG X 997 O1 VO4 X 998 1555 1555 1.96 LINK MG MG X 997 O1B ADP X 999 1555 1555 2.00 LINK V VO4 X 998 O3B ADP X 999 1555 1555 2.11 CISPEP 1 GLN X 521 PRO X 522 0 -4.54 CISPEP 2 ALA X 699 ASP X 700 0 11.31 CISPEP 3 ASP X 733 PRO X 734 0 -17.62 CISPEP 4 GLN X 736 TYR X 737 0 -19.90 SITE 1 AC1 6 THR X 186 SER X 237 HOH X 780 HOH X 787 SITE 2 AC1 6 VO4 X 998 ADP X 999 SITE 1 AC2 12 SER X 181 GLY X 182 LYS X 185 ASN X 233 SITE 2 AC2 12 ALA X 236 SER X 237 GLY X 457 HOH X 780 SITE 3 AC2 12 HOH X 787 HOH X 792 MG X 997 ADP X 999 SITE 1 AC3 21 ASN X 127 PRO X 128 PHE X 129 LYS X 130 SITE 2 AC3 21 TYR X 135 GLY X 182 ALA X 183 GLY X 184 SITE 3 AC3 21 LYS X 185 THR X 186 GLU X 187 ASN X 233 SITE 4 AC3 21 HOH X 774 HOH X 777 HOH X 780 HOH X 787 SITE 5 AC3 21 HOH X 908 MG X 997 VO4 X 998 HOH X1016 SITE 6 AC3 21 HOH X1049 SITE 1 AC4 11 ARG X 238 PHE X 239 GLY X 240 TYR X 261 SITE 2 AC4 11 LEU X 262 SER X 456 GLU X 467 CYS X 470 SITE 3 AC4 11 TYR X 634 LEU X 641 HOH X 927 CRYST1 88.430 146.440 153.760 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011308 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006504 0.00000