HEADER PROTEIN BINDING 15-MAY-10 3N1F TITLE CRYSTAL STRUCTURE OF IHHN BOUND TO CDOFN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDIAN HEDGEHOG PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: IHH, HHG-2, INDIAN HEDGEHOG PROTEIN N-PRODUCT, INDIAN COMPND 6 HEDGEHOG PROTEIN C-PRODUCT; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELL ADHESION MOLECULE-RELATED/DOWN-REGULATED BY ONCOGENES; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: THIRD FN3 DOMAIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IHH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CDON, CDO; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING SITES, CELL ADHESION MOLECULES, CELL CYCLE PROTEINS, CELL KEYWDS 2 LINE, CONSERVED SEQUENCE, FIBRONECTINS, HEDGEHOG PROTEINS, KEYWDS 3 IMMUNOGLOBULIN G, MEMBRANE GLYCOPROTEINS, MEMBRANE PROTEINS, PROTEIN KEYWDS 4 BINDING, TERTIARY, RECEPTORS, CELL SURFACE, SEQUENCE HOMOLOGY, KEYWDS 5 SIGNAL TRANSDUCTION, TUMOR SUPPRESSOR PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR J.M.KAVRAN,D.J.LEAHY REVDAT 4 06-SEP-23 3N1F 1 REMARK SEQADV LINK REVDAT 3 19-JUN-13 3N1F 1 JRNL VERSN REVDAT 2 16-JUN-10 3N1F 1 JRNL REVDAT 1 02-JUN-10 3N1F 0 JRNL AUTH J.M.KAVRAN,M.D.WARD,O.O.OLADOSU,S.MULEPATI,D.J.LEAHY JRNL TITL ALL MAMMALIAN HEDGEHOG PROTEINS INTERACT WITH CELL ADHESION JRNL TITL 2 MOLECULE, DOWN-REGULATED BY ONCOGENES (CDO) AND BROTHER OF JRNL TITL 3 CDO (BOC) IN A CONSERVED MANNER. JRNL REF J.BIOL.CHEM. V. 285 24584 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20519495 JRNL DOI 10.1074/JBC.M110.131680 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 61182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3141 - 4.4738 0.99 3044 161 0.1646 0.1775 REMARK 3 2 4.4738 - 3.5542 0.99 2956 145 0.1256 0.1416 REMARK 3 3 3.5542 - 3.1058 0.99 2946 145 0.1307 0.1658 REMARK 3 4 3.1058 - 2.8222 0.95 2800 139 0.1466 0.1918 REMARK 3 5 2.8222 - 2.6202 0.94 2747 147 0.1495 0.2109 REMARK 3 6 2.6202 - 2.4658 0.94 2742 148 0.1379 0.1761 REMARK 3 7 2.4658 - 2.3424 0.95 2754 138 0.1362 0.1816 REMARK 3 8 2.3424 - 2.2405 0.96 2757 148 0.1299 0.1580 REMARK 3 9 2.2405 - 2.1543 0.97 2834 158 0.1360 0.1801 REMARK 3 10 2.1543 - 2.0800 0.97 2785 162 0.1390 0.1678 REMARK 3 11 2.0800 - 2.0150 0.96 2796 147 0.1422 0.1829 REMARK 3 12 2.0150 - 1.9574 0.94 2688 147 0.1450 0.1967 REMARK 3 13 1.9574 - 1.9059 0.91 2625 141 0.1437 0.2130 REMARK 3 14 1.9059 - 1.8594 0.88 2569 114 0.1522 0.2178 REMARK 3 15 1.8594 - 1.8172 0.86 2478 129 0.1603 0.1912 REMARK 3 16 1.8172 - 1.7785 0.87 2511 127 0.1620 0.2323 REMARK 3 17 1.7785 - 1.7429 0.85 2431 140 0.1653 0.2066 REMARK 3 18 1.7429 - 1.7101 0.85 2464 121 0.1661 0.2127 REMARK 3 19 1.7101 - 1.6795 0.83 2403 125 0.1803 0.2595 REMARK 3 20 1.6795 - 1.6511 0.82 2325 146 0.1957 0.2195 REMARK 3 21 1.6511 - 1.6244 0.80 2262 151 0.2033 0.2623 REMARK 3 22 1.6244 - 1.6000 0.77 2175 111 0.2325 0.2574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 50.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.68540 REMARK 3 B22 (A**2) : -9.17150 REMARK 3 B33 (A**2) : -8.69210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7467 REMARK 3 ANGLE : 1.245 13165 REMARK 3 CHIRALITY : 0.085 583 REMARK 3 PLANARITY : 0.005 1192 REMARK 3 DIHEDRAL : 14.297 1935 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE ADDED TO THE MODEL BUT REMARK 3 NOT REFINED AS SUGGESTED IN THE PHENIX REFINEMENT PROGRAM. REMARK 3 REFERENCE: AFONINE, P.V., GROSSE-KUNSTLEVE, R.W. & ADAMS, P.D. REMARK 3 (2005). CCP4 NEWSL. 42, CONTRIBUTION 8. REMARK 4 REMARK 4 3N1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67040 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3D1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM CA(OAC), VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.05250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.05250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.87900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.09900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.87900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.09900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.05250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.87900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.09900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.05250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.87900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.09900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 VAL A 33 REMARK 465 VAL A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 465 ARG A 39 REMARK 465 PRO A 40 REMARK 465 PRO A 41 REMARK 465 ARG A 42 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 465 PRO B 28 REMARK 465 GLY B 29 REMARK 465 PRO B 30 REMARK 465 GLY B 31 REMARK 465 ARG B 32 REMARK 465 VAL B 33 REMARK 465 VAL B 34 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 ARG B 37 REMARK 465 ARG B 38 REMARK 465 ARG B 39 REMARK 465 PRO B 40 REMARK 465 PRO B 41 REMARK 465 ARG B 42 REMARK 465 LYS B 43 REMARK 465 GLY C 823 REMARK 465 SER C 824 REMARK 465 THR C 825 REMARK 465 SER C 852 REMARK 465 SER C 853 REMARK 465 ASN C 854 REMARK 465 ASN C 855 REMARK 465 ASN C 856 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 160 CA CB CG CD NE CZ NH1 REMARK 480 ARG B 160 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 160 O HOH B 719 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 -6.88 79.00 REMARK 500 ALA A 63 -121.18 -115.50 REMARK 500 LYS B 59 30.33 -97.59 REMARK 500 ALA B 63 -118.53 -115.92 REMARK 500 ILE C 827 -77.33 -120.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 6 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 1 O REMARK 620 2 GLU A 95 OE2 76.9 REMARK 620 3 GLU A 131 OE1 82.7 121.8 REMARK 620 4 GLU A 131 OE2 72.8 71.7 50.2 REMARK 620 5 ASP A 134 OD1 95.9 152.5 82.7 132.1 REMARK 620 6 ASP A 136 OD2 132.7 86.9 141.1 142.6 78.6 REMARK 620 7 HOH A 195 O 74.0 81.6 142.3 141.1 70.9 59.7 REMARK 620 8 HOH D 8 O 144.7 83.9 82.6 73.1 113.8 74.5 132.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 20 O REMARK 620 2 HIS A 145 NE2 113.2 REMARK 620 3 ASP A 152 OD1 112.0 107.1 REMARK 620 4 HIS A 187 ND1 104.0 109.3 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 5 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE2 REMARK 620 2 GLU A 94 OE1 52.5 REMARK 620 3 GLU A 95 OE2 75.0 110.7 REMARK 620 4 GLU A 95 OE1 77.9 74.4 50.9 REMARK 620 5 ASP A 100 OD2 141.7 92.3 110.8 78.1 REMARK 620 6 ASP A 100 OD1 157.5 145.3 83.4 93.5 53.1 REMARK 620 7 THR A 130 O 110.7 91.2 154.0 154.0 81.0 86.2 REMARK 620 8 GLU A 131 OE2 81.6 127.6 73.6 124.0 136.7 86.3 82.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 8 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 96 OD1 REMARK 620 2 HOH A 657 O 91.5 REMARK 620 3 HOH A 716 O 96.9 90.1 REMARK 620 4 ASN B 96 OD1 166.2 101.7 79.2 REMARK 620 5 HOH B 194 O 84.4 174.8 87.2 82.2 REMARK 620 6 HOH B 240 O 121.2 63.5 132.3 69.4 121.4 REMARK 620 7 HOH B 343 O 71.7 100.0 164.8 109.5 81.8 62.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 145 NE2 REMARK 620 2 ASP B 152 OD1 108.0 REMARK 620 3 HIS B 187 ND1 106.1 109.7 REMARK 620 4 HOH B 328 O 111.0 117.1 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 2 O REMARK 620 2 GLU B 95 OE2 76.0 REMARK 620 3 GLU B 131 OE1 83.3 124.3 REMARK 620 4 GLU B 131 OE2 73.3 72.1 52.4 REMARK 620 5 ASP B 134 OD1 95.9 151.2 81.0 132.6 REMARK 620 6 ASP B 136 OD2 129.8 84.9 142.8 142.8 79.3 REMARK 620 7 HOH B 200 O 74.4 81.1 141.0 141.9 70.2 56.8 REMARK 620 8 HOH C 11 O 145.2 86.2 82.4 72.9 112.9 76.8 132.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 4 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 94 OE1 REMARK 620 2 GLU B 94 OE2 52.8 REMARK 620 3 GLU B 95 OE2 111.7 75.0 REMARK 620 4 GLU B 95 OE1 75.3 77.7 50.7 REMARK 620 5 ASP B 100 OD2 94.9 144.9 111.6 81.1 REMARK 620 6 ASP B 100 OD1 146.2 155.8 81.6 92.5 51.6 REMARK 620 7 THR B 130 O 91.2 110.5 152.6 155.6 79.9 87.6 REMARK 620 8 GLU B 131 OE2 127.1 80.1 71.0 121.1 134.9 86.4 83.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N1G RELATED DB: PDB REMARK 900 RELATED ID: 3N1M RELATED DB: PDB REMARK 900 RELATED ID: 3N1O RELATED DB: PDB REMARK 900 RELATED ID: 3N1P RELATED DB: PDB REMARK 900 RELATED ID: 3N1Q RELATED DB: PDB REMARK 900 RELATED ID: 3N1R RELATED DB: PDB DBREF 3N1F A 29 193 UNP Q14623 IHH_HUMAN 29 193 DBREF 3N1F B 29 193 UNP Q14623 IHH_HUMAN 29 193 DBREF 3N1F C 826 924 UNP Q4KMG0 CDON_HUMAN 826 924 DBREF 3N1F D 826 924 UNP Q4KMG0 CDON_HUMAN 826 924 SEQADV 3N1F GLY A 25 UNP Q14623 EXPRESSION TAG SEQADV 3N1F SER A 26 UNP Q14623 EXPRESSION TAG SEQADV 3N1F GLY A 27 UNP Q14623 EXPRESSION TAG SEQADV 3N1F PRO A 28 UNP Q14623 EXPRESSION TAG SEQADV 3N1F GLY B 25 UNP Q14623 EXPRESSION TAG SEQADV 3N1F SER B 26 UNP Q14623 EXPRESSION TAG SEQADV 3N1F GLY B 27 UNP Q14623 EXPRESSION TAG SEQADV 3N1F PRO B 28 UNP Q14623 EXPRESSION TAG SEQADV 3N1F GLY C 823 UNP Q4KMG0 EXPRESSION TAG SEQADV 3N1F SER C 824 UNP Q4KMG0 EXPRESSION TAG SEQADV 3N1F THR C 825 UNP Q4KMG0 EXPRESSION TAG SEQADV 3N1F GLY D 823 UNP Q4KMG0 EXPRESSION TAG SEQADV 3N1F SER D 824 UNP Q4KMG0 EXPRESSION TAG SEQADV 3N1F THR D 825 UNP Q4KMG0 EXPRESSION TAG SEQRES 1 A 169 GLY SER GLY PRO GLY PRO GLY ARG VAL VAL GLY SER ARG SEQRES 2 A 169 ARG ARG PRO PRO ARG LYS LEU VAL PRO LEU ALA TYR LYS SEQRES 3 A 169 GLN PHE SER PRO ASN VAL PRO GLU LYS THR LEU GLY ALA SEQRES 4 A 169 SER GLY ARG TYR GLU GLY LYS ILE ALA ARG SER SER GLU SEQRES 5 A 169 ARG PHE LYS GLU LEU THR PRO ASN TYR ASN PRO ASP ILE SEQRES 6 A 169 ILE PHE LYS ASP GLU GLU ASN THR GLY ALA ASP ARG LEU SEQRES 7 A 169 MET THR GLN ARG CYS LYS ASP ARG LEU ASN SER LEU ALA SEQRES 8 A 169 ILE SER VAL MET ASN GLN TRP PRO GLY VAL LYS LEU ARG SEQRES 9 A 169 VAL THR GLU GLY TRP ASP GLU ASP GLY HIS HIS SER GLU SEQRES 10 A 169 GLU SER LEU HIS TYR GLU GLY ARG ALA VAL ASP ILE THR SEQRES 11 A 169 THR SER ASP ARG ASP ARG ASN LYS TYR GLY LEU LEU ALA SEQRES 12 A 169 ARG LEU ALA VAL GLU ALA GLY PHE ASP TRP VAL TYR TYR SEQRES 13 A 169 GLU SER LYS ALA HIS VAL HIS CYS SER VAL LYS SER GLU SEQRES 1 B 169 GLY SER GLY PRO GLY PRO GLY ARG VAL VAL GLY SER ARG SEQRES 2 B 169 ARG ARG PRO PRO ARG LYS LEU VAL PRO LEU ALA TYR LYS SEQRES 3 B 169 GLN PHE SER PRO ASN VAL PRO GLU LYS THR LEU GLY ALA SEQRES 4 B 169 SER GLY ARG TYR GLU GLY LYS ILE ALA ARG SER SER GLU SEQRES 5 B 169 ARG PHE LYS GLU LEU THR PRO ASN TYR ASN PRO ASP ILE SEQRES 6 B 169 ILE PHE LYS ASP GLU GLU ASN THR GLY ALA ASP ARG LEU SEQRES 7 B 169 MET THR GLN ARG CYS LYS ASP ARG LEU ASN SER LEU ALA SEQRES 8 B 169 ILE SER VAL MET ASN GLN TRP PRO GLY VAL LYS LEU ARG SEQRES 9 B 169 VAL THR GLU GLY TRP ASP GLU ASP GLY HIS HIS SER GLU SEQRES 10 B 169 GLU SER LEU HIS TYR GLU GLY ARG ALA VAL ASP ILE THR SEQRES 11 B 169 THR SER ASP ARG ASP ARG ASN LYS TYR GLY LEU LEU ALA SEQRES 12 B 169 ARG LEU ALA VAL GLU ALA GLY PHE ASP TRP VAL TYR TYR SEQRES 13 B 169 GLU SER LYS ALA HIS VAL HIS CYS SER VAL LYS SER GLU SEQRES 1 C 102 GLY SER THR PRO ILE THR GLY PRO HIS ILE ALA TYR THR SEQRES 2 C 102 GLU ALA VAL SER ASP THR GLN ILE MET LEU LYS TRP THR SEQRES 3 C 102 TYR ILE PRO SER SER ASN ASN ASN THR PRO ILE GLN GLY SEQRES 4 C 102 PHE TYR ILE TYR TYR ARG PRO THR ASP SER ASP ASN ASP SEQRES 5 C 102 SER ASP TYR LYS ARG ASP VAL VAL GLU GLY SER LYS GLN SEQRES 6 C 102 TRP HIS MET ILE GLY HIS LEU GLN PRO GLU THR SER TYR SEQRES 7 C 102 ASP ILE LYS MET GLN CYS PHE ASN GLU GLY GLY GLU SER SEQRES 8 C 102 GLU PHE SER ASN VAL MET ILE CYS GLU THR LYS SEQRES 1 D 102 GLY SER THR PRO ILE THR GLY PRO HIS ILE ALA TYR THR SEQRES 2 D 102 GLU ALA VAL SER ASP THR GLN ILE MET LEU LYS TRP THR SEQRES 3 D 102 TYR ILE PRO SER SER ASN ASN ASN THR PRO ILE GLN GLY SEQRES 4 D 102 PHE TYR ILE TYR TYR ARG PRO THR ASP SER ASP ASN ASP SEQRES 5 D 102 SER ASP TYR LYS ARG ASP VAL VAL GLU GLY SER LYS GLN SEQRES 6 D 102 TRP HIS MET ILE GLY HIS LEU GLN PRO GLU THR SER TYR SEQRES 7 D 102 ASP ILE LYS MET GLN CYS PHE ASN GLU GLY GLY GLU SER SEQRES 8 D 102 GLU PHE SER ASN VAL MET ILE CYS GLU THR LYS HET ZN A 2 1 HET CA A 5 1 HET CA A 6 1 HET CA A 8 1 HET ZN B 1 1 HET CA B 3 1 HET CA B 4 1 HET CA C 7 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CA 6(CA 2+) FORMUL 13 HOH *756(H2 O) HELIX 1 13 ASN C 873 TYR C 877 5 5 HELIX 2 14 ILE D 850 ASN D 855 5 6 HELIX 3 15 ASN D 873 TYR D 877 5 5 SHEET 1 E 3 HIS C 831 ALA C 837 0 SHEET 2 E 3 ILE C 843 THR C 848 -1 O MET C 844 N GLU C 836 SHEET 3 E 3 TRP C 888 ILE C 891 -1 O ILE C 891 N ILE C 843 SHEET 1 F 4 LYS C 878 GLU C 883 0 SHEET 2 F 4 GLY C 861 PRO C 868 -1 N TYR C 866 O LYS C 878 SHEET 3 F 4 SER C 899 ASN C 908 -1 O LYS C 903 N TYR C 865 SHEET 4 F 4 GLY C 911 GLU C 912 -1 O GLY C 911 N ASN C 908 SHEET 1 G 4 LYS C 878 GLU C 883 0 SHEET 2 G 4 GLY C 861 PRO C 868 -1 N TYR C 866 O LYS C 878 SHEET 3 G 4 SER C 899 ASN C 908 -1 O LYS C 903 N TYR C 865 SHEET 4 G 4 MET C 919 GLU C 922 -1 O MET C 919 N ILE C 902 SHEET 1 H 3 HIS D 831 ALA D 837 0 SHEET 2 H 3 ILE D 843 THR D 848 -1 O MET D 844 N GLU D 836 SHEET 3 H 3 TRP D 888 ILE D 891 -1 O ILE D 891 N ILE D 843 SHEET 1 I 4 LYS D 878 GLU D 883 0 SHEET 2 I 4 GLY D 861 PRO D 868 -1 N TYR D 866 O LYS D 878 SHEET 3 I 4 SER D 899 ASN D 908 -1 O ASP D 901 N ARG D 867 SHEET 4 I 4 GLY D 911 GLU D 912 -1 O GLY D 911 N ASN D 908 SHEET 1 J 4 LYS D 878 GLU D 883 0 SHEET 2 J 4 GLY D 861 PRO D 868 -1 N TYR D 866 O LYS D 878 SHEET 3 J 4 SER D 899 ASN D 908 -1 O ASP D 901 N ARG D 867 SHEET 4 J 4 MET D 919 GLU D 922 -1 O MET D 919 N ILE D 902 LINK O HOH A 1 CA CA A 6 1555 1555 2.43 LINK ZN ZN A 2 O HOH A 20 1555 1555 2.01 LINK ZN ZN A 2 NE2 HIS A 145 1555 1555 2.01 LINK ZN ZN A 2 OD1 ASP A 152 1555 1555 1.95 LINK ZN ZN A 2 ND1 HIS A 187 1555 1555 2.03 LINK CA CA A 5 OE2 GLU A 94 1555 1555 2.43 LINK CA CA A 5 OE1 GLU A 94 1555 1555 2.49 LINK CA CA A 5 OE2 GLU A 95 1555 1555 2.51 LINK CA CA A 5 OE1 GLU A 95 1555 1555 2.67 LINK CA CA A 5 OD2 ASP A 100 1555 1555 2.44 LINK CA CA A 5 OD1 ASP A 100 1555 1555 2.48 LINK CA CA A 5 O THR A 130 1555 1555 2.36 LINK CA CA A 5 OE2 GLU A 131 1555 1555 2.32 LINK CA CA A 6 OE2 GLU A 95 1555 1555 2.31 LINK CA CA A 6 OE1 GLU A 131 1555 1555 2.57 LINK CA CA A 6 OE2 GLU A 131 1555 1555 2.61 LINK CA CA A 6 OD1 ASP A 134 1555 1555 2.29 LINK CA CA A 6 OD2 ASP A 136 1555 1555 2.40 LINK CA CA A 6 O HOH A 195 1555 1555 3.06 LINK CA CA A 6 O HOH D 8 1555 1555 2.48 LINK CA CA A 8 OD1 ASN A 96 1555 1555 2.36 LINK CA CA A 8 O HOH A 657 1555 1555 2.33 LINK CA CA A 8 O HOH A 716 1555 1555 2.33 LINK CA CA A 8 OD1 ASN B 96 1555 1555 2.36 LINK CA CA A 8 O HOH B 194 1555 1555 2.43 LINK CA CA A 8 O HOH B 240 1555 1555 2.77 LINK CA CA A 8 O HOH B 343 1555 1555 2.70 LINK ZN ZN B 1 NE2 HIS B 145 1555 1555 2.03 LINK ZN ZN B 1 OD1 ASP B 152 1555 1555 1.94 LINK ZN ZN B 1 ND1 HIS B 187 1555 1555 2.05 LINK ZN ZN B 1 O HOH B 328 1555 1555 1.93 LINK O HOH B 2 CA CA B 3 1555 1555 2.45 LINK CA CA B 3 OE2 GLU B 95 1555 1555 2.28 LINK CA CA B 3 OE1 GLU B 131 1555 1555 2.51 LINK CA CA B 3 OE2 GLU B 131 1555 1555 2.53 LINK CA CA B 3 OD1 ASP B 134 1555 1555 2.33 LINK CA CA B 3 OD2 ASP B 136 1555 1555 2.44 LINK CA CA B 3 O HOH B 200 1555 1555 3.08 LINK CA CA B 3 O HOH C 11 1555 1555 2.53 LINK CA CA B 4 OE1 GLU B 94 1555 1555 2.45 LINK CA CA B 4 OE2 GLU B 94 1555 1555 2.46 LINK CA CA B 4 OE2 GLU B 95 1555 1555 2.54 LINK CA CA B 4 OE1 GLU B 95 1555 1555 2.60 LINK CA CA B 4 OD2 ASP B 100 1555 1555 2.46 LINK CA CA B 4 OD1 ASP B 100 1555 1555 2.50 LINK CA CA B 4 O THR B 130 1555 1555 2.40 LINK CA CA B 4 OE2 GLU B 131 1555 1555 2.34 LINK CA CA C 7 O HOH C 718 1555 1555 2.35 CISPEP 1 SER A 53 PRO A 54 0 -6.54 CISPEP 2 SER B 53 PRO B 54 0 0.43 SITE 1 AC1 4 HOH A 20 HIS A 145 ASP A 152 HIS A 187 SITE 1 AC2 5 GLU A 94 GLU A 95 ASP A 100 THR A 130 SITE 2 AC2 5 GLU A 131 SITE 1 AC3 7 HOH A 1 GLU A 95 GLU A 131 ASP A 134 SITE 2 AC3 7 ASP A 136 HOH A 195 HOH D 8 SITE 1 AC4 7 ASN A 96 HOH A 657 HOH A 716 ASN B 96 SITE 2 AC4 7 HOH B 194 HOH B 240 HOH B 343 SITE 1 AC5 4 HIS B 145 ASP B 152 HIS B 187 HOH B 328 SITE 1 AC6 7 HOH B 2 GLU B 95 GLU B 131 ASP B 134 SITE 2 AC6 7 ASP B 136 HOH B 200 HOH C 11 SITE 1 AC7 5 GLU B 94 GLU B 95 ASP B 100 THR B 130 SITE 2 AC7 5 GLU B 131 SITE 1 AC8 6 ASN A 120 HOH A 239 HOH A 266 HOH A 324 SITE 2 AC8 6 HOH C 718 HIS C 893 CRYST1 71.758 98.198 144.105 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006939 0.00000