HEADER HYDROLASE 20-MAY-10 3N3G TITLE 4-(3-TRIFLUOROMETHYLPHENYL)-PYRIMIDINE-2-CARBONITRILE AS CATHEPSIN S TITLE 2 INHIBITORS: N3, NOT N1 IS CRITICALLY IMPORTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN S; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSS; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BTI-TN-5B1-4 (HI-5) KEYWDS CATHEPSIN S, COVALENT INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.FRADERA,J.C.M.UITDEHAAG,M.VAN ZEELAND REVDAT 2 28-JUL-10 3N3G 1 JRNL REVDAT 1 14-JUL-10 3N3G 0 JRNL AUTH J.CAI,X.FRADERA,M.VAN ZEELAND,M.DEMPSTER,K.S.CAMERON, JRNL AUTH 2 D.J.BENNETT,J.ROBINSON,L.POPPLESTONE,M.BAUGH,P.WESTWOOD, JRNL AUTH 3 J.BRUIN,W.HAMILTON,E.KINGHORN,C.LONG,J.C.UITDEHAAG JRNL TITL 4-(3-TRIFLUOROMETHYLPHENYL)-PYRIMIDINE-2-CARBONITRILE AS JRNL TITL 2 CATHEPSIN S INHIBITORS: N3, NOT N1 IS CRITICALLY IMPORTANT. JRNL REF BIOORG.MED.CHEM.LETT. V. 20 4507 2010 JRNL REFN ISSN 0960-894X JRNL PMID 20580231 JRNL DOI 10.1016/J.BMCL.2010.06.043 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 65283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3289 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.4710 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.5460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 512 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3598 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2442 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4873 ; 1.145 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5911 ; 0.871 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 5.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;37.388 ;24.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;11.873 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;24.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4050 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 757 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 682 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2630 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1747 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1701 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 367 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2244 ; 0.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 901 ; 0.104 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3442 ; 0.839 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1642 ; 1.347 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1426 ; 1.971 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N3G COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 85.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 5.280 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 24.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.41 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLISATION SOLUTION: 50 MM REMARK 280 NAACETATE, 0.25 M NACL, 4 MM MMTS, 30% PEG 4K, 0.1 M NACITRATE, REMARK 280 0,2 M (NH4)2SO4, 10 MM DMSO, 10 MM DTT. CRYOPROTECTANT REMARK 280 COMPOSITION: 30% PEG 4K, 0.1 M NACITRATE, 0.2 M (NH4)2SO4, 15% REMARK 280 PEG 400 (+ 10% COMPOUND). LIGAND WAS INTRODUCED BY SOAKING REMARK 280 CRYSTALS PREPARED WITH ANOTHER COMPOUND, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.45100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.72550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 113.17650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.45100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.17650 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.72550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 308 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 218 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 25 C18 935 B 221 1.72 REMARK 500 SG CYS A 25 C18 935 A 220 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 58 -126.70 -112.27 REMARK 500 ARG A 141 48.64 -91.47 REMARK 500 LYS A 202 51.39 -117.07 REMARK 500 SER B 21 31.93 -89.46 REMARK 500 THR B 58 -126.24 -114.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 935 A 220 REMARK 610 935 B 221 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 935 A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 93N A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 935 B 221 DBREF 3N3G A 1 217 UNP P25774 CATS_HUMAN 115 331 DBREF 3N3G B 1 217 UNP P25774 CATS_HUMAN 115 331 SEQRES 1 A 217 LEU PRO ASP SER VAL ASP TRP ARG GLU LYS GLY CYS VAL SEQRES 2 A 217 THR GLU VAL LYS TYR GLN GLY SER CYS GLY ALA CYS TRP SEQRES 3 A 217 ALA PHE SER ALA VAL GLY ALA LEU GLU ALA GLN LEU LYS SEQRES 4 A 217 LEU LYS THR GLY LYS LEU VAL SER LEU SER ALA GLN ASN SEQRES 5 A 217 LEU VAL ASP CYS SER THR GLU LYS TYR GLY ASN LYS GLY SEQRES 6 A 217 CYS ASN GLY GLY PHE MET THR THR ALA PHE GLN TYR ILE SEQRES 7 A 217 ILE ASP ASN LYS GLY ILE ASP SER ASP ALA SER TYR PRO SEQRES 8 A 217 TYR LYS ALA MET ASP GLN LYS CYS GLN TYR ASP SER LYS SEQRES 9 A 217 TYR ARG ALA ALA THR CYS SER LYS TYR THR GLU LEU PRO SEQRES 10 A 217 TYR GLY ARG GLU ASP VAL LEU LYS GLU ALA VAL ALA ASN SEQRES 11 A 217 LYS GLY PRO VAL SER VAL GLY VAL ASP ALA ARG HIS PRO SEQRES 12 A 217 SER PHE PHE LEU TYR ARG SER GLY VAL TYR TYR GLU PRO SEQRES 13 A 217 SER CYS THR GLN ASN VAL ASN HIS GLY VAL LEU VAL VAL SEQRES 14 A 217 GLY TYR GLY ASP LEU ASN GLY LYS GLU TYR TRP LEU VAL SEQRES 15 A 217 LYS ASN SER TRP GLY HIS ASN PHE GLY GLU GLU GLY TYR SEQRES 16 A 217 ILE ARG MET ALA ARG ASN LYS GLY ASN HIS CYS GLY ILE SEQRES 17 A 217 ALA SER PHE PRO SER TYR PRO GLU ILE SEQRES 1 B 217 LEU PRO ASP SER VAL ASP TRP ARG GLU LYS GLY CYS VAL SEQRES 2 B 217 THR GLU VAL LYS TYR GLN GLY SER CYS GLY ALA CYS TRP SEQRES 3 B 217 ALA PHE SER ALA VAL GLY ALA LEU GLU ALA GLN LEU LYS SEQRES 4 B 217 LEU LYS THR GLY LYS LEU VAL SER LEU SER ALA GLN ASN SEQRES 5 B 217 LEU VAL ASP CYS SER THR GLU LYS TYR GLY ASN LYS GLY SEQRES 6 B 217 CYS ASN GLY GLY PHE MET THR THR ALA PHE GLN TYR ILE SEQRES 7 B 217 ILE ASP ASN LYS GLY ILE ASP SER ASP ALA SER TYR PRO SEQRES 8 B 217 TYR LYS ALA MET ASP GLN LYS CYS GLN TYR ASP SER LYS SEQRES 9 B 217 TYR ARG ALA ALA THR CYS SER LYS TYR THR GLU LEU PRO SEQRES 10 B 217 TYR GLY ARG GLU ASP VAL LEU LYS GLU ALA VAL ALA ASN SEQRES 11 B 217 LYS GLY PRO VAL SER VAL GLY VAL ASP ALA ARG HIS PRO SEQRES 12 B 217 SER PHE PHE LEU TYR ARG SER GLY VAL TYR TYR GLU PRO SEQRES 13 B 217 SER CYS THR GLN ASN VAL ASN HIS GLY VAL LEU VAL VAL SEQRES 14 B 217 GLY TYR GLY ASP LEU ASN GLY LYS GLU TYR TRP LEU VAL SEQRES 15 B 217 LYS ASN SER TRP GLY HIS ASN PHE GLY GLU GLU GLY TYR SEQRES 16 B 217 ILE ARG MET ALA ARG ASN LYS GLY ASN HIS CYS GLY ILE SEQRES 17 B 217 ALA SER PHE PRO SER TYR PRO GLU ILE HET PEG A 218 7 HET DMS A 219 4 HET 935 A 220 22 HET 93N A 221 29 HET SO4 B 218 5 HET GOL B 219 6 HET GOL B 220 6 HET 935 B 221 21 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM DMS DIMETHYL SULFOXIDE HETNAM 935 (E)-1-(6-{4-[3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]-3- HETNAM 2 935 (TRIFLUOROMETHYL)PHENYL}PYRIDIN-2-YL)METHANIMINE HETNAM 93N 6-{4-[3-(4-METHYLPIPERAZIN-1-YL)PROPOXY]-3- HETNAM 2 93N (TRIFLUOROMETHYL)PHENYL}PYRIDINE-2-CARBONITRILE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL FORMUL 3 PEG C4 H10 O3 FORMUL 4 DMS C2 H6 O S FORMUL 5 935 2(C21 H25 F3 N4 O) FORMUL 6 93N C21 H23 F3 N4 O FORMUL 7 SO4 O4 S 2- FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *512(H2 O) HELIX 1 1 ARG A 8 GLY A 11 5 4 HELIX 2 2 ALA A 24 GLY A 43 1 20 HELIX 3 3 SER A 49 SER A 57 1 9 HELIX 4 4 THR A 58 GLY A 62 5 5 HELIX 5 5 LYS A 64 GLY A 68 5 5 HELIX 6 6 PHE A 70 LYS A 82 1 13 HELIX 7 7 ASP A 102 LYS A 104 5 3 HELIX 8 8 ARG A 120 LYS A 131 1 12 HELIX 9 9 HIS A 142 LEU A 147 1 6 HELIX 10 10 ASN A 204 ILE A 208 5 5 HELIX 11 11 ARG B 8 GLY B 11 5 4 HELIX 12 12 ALA B 24 GLY B 43 1 20 HELIX 13 13 SER B 49 SER B 57 1 9 HELIX 14 14 THR B 58 GLY B 62 5 5 HELIX 15 15 LYS B 64 GLY B 68 5 5 HELIX 16 16 PHE B 70 LYS B 82 1 13 HELIX 17 17 ASP B 102 LYS B 104 5 3 HELIX 18 18 ARG B 120 LYS B 131 1 12 HELIX 19 19 HIS B 142 LEU B 147 1 6 HELIX 20 20 ASN B 204 ILE B 208 5 5 SHEET 1 A 3 VAL A 5 ASP A 6 0 SHEET 2 A 3 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 A 3 VAL A 134 VAL A 138 -1 N VAL A 136 O VAL A 166 SHEET 1 B 5 VAL A 5 ASP A 6 0 SHEET 2 B 5 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 B 5 LYS A 177 LYS A 183 -1 O LYS A 183 N LEU A 167 SHEET 4 B 5 TYR A 195 ALA A 199 -1 O MET A 198 N TRP A 180 SHEET 5 B 5 VAL A 152 TYR A 153 1 N TYR A 153 O ARG A 197 SHEET 1 C 2 ILE A 84 ASP A 85 0 SHEET 2 C 2 ARG A 106 ALA A 108 -1 O ALA A 107 N ILE A 84 SHEET 1 D 2 LYS A 112 GLU A 115 0 SHEET 2 D 2 SER A 213 GLU A 216 -1 O TYR A 214 N THR A 114 SHEET 1 E 3 VAL B 5 ASP B 6 0 SHEET 2 E 3 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 E 3 VAL B 134 VAL B 138 -1 N VAL B 136 O VAL B 166 SHEET 1 F 4 VAL B 5 ASP B 6 0 SHEET 2 F 4 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 F 4 LYS B 177 LYS B 183 -1 O LYS B 183 N LEU B 167 SHEET 4 F 4 TYR B 195 ALA B 199 -1 O MET B 198 N TRP B 180 SHEET 1 G 2 ILE B 84 ASP B 85 0 SHEET 2 G 2 ARG B 106 ALA B 108 -1 O ALA B 107 N ILE B 84 SHEET 1 H 2 LYS B 112 GLU B 115 0 SHEET 2 H 2 SER B 213 GLU B 216 -1 O GLU B 216 N LYS B 112 SSBOND 1 CYS A 22 CYS A 66 1555 1555 2.03 SSBOND 2 CYS A 56 CYS A 99 1555 1555 2.07 SSBOND 3 CYS A 158 CYS A 206 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 66 1555 1555 2.03 SSBOND 5 CYS B 56 CYS B 99 1555 1555 2.06 SSBOND 6 CYS B 158 CYS B 206 1555 1555 2.03 LINK N19 935 B 221 SG CYS B 25 1555 1555 1.39 SITE 1 AC1 3 TYR A 18 93N A 221 HOH A 500 SITE 1 AC2 4 SER A 89 TYR A 90 GLN A 100 LYS B 44 SITE 1 AC3 13 GLN A 19 GLY A 23 CYS A 25 ASN A 67 SITE 2 AC3 13 GLY A 68 MET A 71 GLY A 137 VAL A 162 SITE 3 AC3 13 ASN A 163 GLY A 165 HOH A 327 HOH A 362 SITE 4 AC3 13 HOH A 415 SITE 1 AC4 9 TYR A 18 GLN A 19 GLY A 20 PHE A 146 SITE 2 AC4 9 LEU A 147 ARG A 149 TRP A 186 ASN A 189 SITE 3 AC4 9 PEG A 218 SITE 1 AC5 7 LYS B 82 SER B 103 ARG B 106 HOH B 365 SITE 2 AC5 7 HOH B 369 HOH B 370 HOH B 415 SITE 1 AC6 4 THR B 14 GLU B 15 SER B 47 HOH B 287 SITE 1 AC7 4 HOH A 275 VAL B 16 HIS B 188 HOH B 273 SITE 1 AC8 9 GLY B 23 CYS B 25 GLY B 68 MET B 71 SITE 2 AC8 9 GLY B 137 VAL B 162 ASN B 163 HIS B 164 SITE 3 AC8 9 GLY B 165 CRYST1 85.757 85.757 150.902 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006627 0.00000