HEADER TRANSFERASE 21-MAY-10 3N3Y TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE X (THYX) FROM HELICOBACTER TITLE 2 PYLORI WITH FAD AND DUMP AT 2.31A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: THYMIDYLATE SYNTHASE X, THYX, TS, TSASE; COMPND 5 EC: 2.1.1.148; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 102617; SOURCE 4 STRAIN: SS1; SOURCE 5 GENE: THYX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS THYMIDYLATE SYNTHASE THYX, HELICOBACTER PYLORI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.WANG,Q.WANG,J.CHEN,L.CHEN,H.JIANG,X.SHEN REVDAT 3 20-MAR-24 3N3Y 1 REMARK SEQADV REVDAT 2 08-NOV-17 3N3Y 1 REMARK REVDAT 1 25-MAY-11 3N3Y 0 JRNL AUTH K.WANG,Q.WANG,J.CHEN,L.CHEN,H.JIANG,X.SHEN JRNL TITL STRUCTURE, ENZYMATIC CHARACTERIZATION AND INHIBITOR JRNL TITL 2 DISCOVERY OF THYMIDYLATE SYNTHASE X (THYX) FROM HELICOBACTER JRNL TITL 3 PYLORI STRAIN SS1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 42533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6920 - 4.9680 0.98 4101 217 0.1740 0.1980 REMARK 3 2 4.9680 - 3.9440 1.00 4088 207 0.1390 0.1720 REMARK 3 3 3.9440 - 3.4460 1.00 4020 231 0.1560 0.2000 REMARK 3 4 3.4460 - 3.1310 1.00 4081 219 0.1720 0.2230 REMARK 3 5 3.1310 - 2.9070 1.00 4047 246 0.1990 0.2730 REMARK 3 6 2.9070 - 2.7360 1.00 4014 225 0.2040 0.2610 REMARK 3 7 2.7360 - 2.5990 1.00 4081 198 0.1840 0.2730 REMARK 3 8 2.5990 - 2.4860 1.00 4045 217 0.1950 0.2600 REMARK 3 9 2.4860 - 2.3900 1.00 4056 180 0.2000 0.2990 REMARK 3 10 2.3900 - 2.3070 0.96 3856 204 0.2070 0.2870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 44.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.73700 REMARK 3 B22 (A**2) : 1.23100 REMARK 3 B33 (A**2) : -9.96800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.87800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7260 REMARK 3 ANGLE : 1.111 9836 REMARK 3 CHIRALITY : 0.072 1078 REMARK 3 PLANARITY : 0.004 1209 REMARK 3 DIHEDRAL : 19.767 2710 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRF; SSRF REMARK 200 BEAMLINE : BL17U; BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794; 0.9794, 0.9796, 0.9719 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.307 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M MES PH 6.0, REMARK 280 20%(W/V) PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.97800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 GLY B -7 REMARK 465 PRO B -6 REMARK 465 LEU B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 PRO B -2 REMARK 465 GLU B -1 REMARK 465 GLY C -7 REMARK 465 PRO C -6 REMARK 465 LEU C -5 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 PRO C -2 REMARK 465 GLU C -1 REMARK 465 ASP C 30 REMARK 465 GLY D -7 REMARK 465 PRO D -6 REMARK 465 LEU D -5 REMARK 465 GLY D -4 REMARK 465 SER D -3 REMARK 465 PRO D -2 REMARK 465 GLU D -1 REMARK 465 PHE D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 33.29 70.81 REMARK 500 SER B 24 33.13 -92.19 REMARK 500 ASP B 117 57.61 -92.69 REMARK 500 ASN B 118 119.88 -163.81 REMARK 500 LEU D 101 47.59 -71.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 304 DBREF 3N3Y A 1 208 UNP Q5UVJ4 Q5UVJ4_HELPY 1 208 DBREF 3N3Y B 1 208 UNP Q5UVJ4 Q5UVJ4_HELPY 1 208 DBREF 3N3Y C 1 208 UNP Q5UVJ4 Q5UVJ4_HELPY 1 208 DBREF 3N3Y D 1 208 UNP Q5UVJ4 Q5UVJ4_HELPY 1 208 SEQADV 3N3Y GLY A -7 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO A -6 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y LEU A -5 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY A -4 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y SER A -3 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO A -2 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLU A -1 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PHE A 0 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY B -7 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO B -6 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y LEU B -5 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY B -4 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y SER B -3 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO B -2 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLU B -1 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PHE B 0 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY C -7 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO C -6 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y LEU C -5 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY C -4 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y SER C -3 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO C -2 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLU C -1 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PHE C 0 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY D -7 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO D -6 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y LEU D -5 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLY D -4 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y SER D -3 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PRO D -2 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y GLU D -1 UNP Q5UVJ4 EXPRESSION TAG SEQADV 3N3Y PHE D 0 UNP Q5UVJ4 EXPRESSION TAG SEQRES 1 A 216 GLY PRO LEU GLY SER PRO GLU PHE MET GLU VAL ILE CYS SEQRES 2 A 216 LYS HIS TYR THR PRO LEU ASP ILE ALA SER GLN ALA ILE SEQRES 3 A 216 ARG THR CYS TRP GLN SER PHE GLU TYR SER ASP ASP GLY SEQRES 4 A 216 GLY CYS LYS ASP LYS GLU LEU ILE HIS ARG VAL GLY ASN SEQRES 5 A 216 ILE PHE ARG HIS SER SER THR LEU GLU HIS LEU TYR TYR SEQRES 6 A 216 ASN PHE GLU ILE LYS GLY LEU SER ARG GLY ALA LEU GLN SEQRES 7 A 216 GLU LEU SER ARG HIS ARG ILE ALA SER LEU SER VAL LYS SEQRES 8 A 216 SER SER ARG TYR THR LEU ARG GLU LEU LYS GLU VAL GLU SEQRES 9 A 216 SER PHE LEU PRO LEU ASN GLU THR ASN LEU GLU ARG ALA SEQRES 10 A 216 ARG GLU PHE LEU VAL PHE VAL ASP ASN GLU LYS VAL ASN SEQRES 11 A 216 ALA MET SER VAL LEU ALA LEU GLU ASN LEU ARG VAL LEU SEQRES 12 A 216 LEU SER GLU HIS ASN ILE LYS ASN ASP LEU ALA LYS TYR SEQRES 13 A 216 ALA MET PRO GLU SER TYR LYS THR HIS LEU ALA TYR SER SEQRES 14 A 216 ILE ASN ALA ARG SER LEU GLN ASN LEU LEU THR LEU ARG SEQRES 15 A 216 SER SER ASN LYS ALA LEU LYS GLU MET GLN ASP LEU ALA SEQRES 16 A 216 LYS ALA LEU PHE ASP ALA LEU PRO GLY GLU HIS GLN TYR SEQRES 17 A 216 LEU PHE GLU ASP CYS LEU LYS HIS SEQRES 1 B 216 GLY PRO LEU GLY SER PRO GLU PHE MET GLU VAL ILE CYS SEQRES 2 B 216 LYS HIS TYR THR PRO LEU ASP ILE ALA SER GLN ALA ILE SEQRES 3 B 216 ARG THR CYS TRP GLN SER PHE GLU TYR SER ASP ASP GLY SEQRES 4 B 216 GLY CYS LYS ASP LYS GLU LEU ILE HIS ARG VAL GLY ASN SEQRES 5 B 216 ILE PHE ARG HIS SER SER THR LEU GLU HIS LEU TYR TYR SEQRES 6 B 216 ASN PHE GLU ILE LYS GLY LEU SER ARG GLY ALA LEU GLN SEQRES 7 B 216 GLU LEU SER ARG HIS ARG ILE ALA SER LEU SER VAL LYS SEQRES 8 B 216 SER SER ARG TYR THR LEU ARG GLU LEU LYS GLU VAL GLU SEQRES 9 B 216 SER PHE LEU PRO LEU ASN GLU THR ASN LEU GLU ARG ALA SEQRES 10 B 216 ARG GLU PHE LEU VAL PHE VAL ASP ASN GLU LYS VAL ASN SEQRES 11 B 216 ALA MET SER VAL LEU ALA LEU GLU ASN LEU ARG VAL LEU SEQRES 12 B 216 LEU SER GLU HIS ASN ILE LYS ASN ASP LEU ALA LYS TYR SEQRES 13 B 216 ALA MET PRO GLU SER TYR LYS THR HIS LEU ALA TYR SER SEQRES 14 B 216 ILE ASN ALA ARG SER LEU GLN ASN LEU LEU THR LEU ARG SEQRES 15 B 216 SER SER ASN LYS ALA LEU LYS GLU MET GLN ASP LEU ALA SEQRES 16 B 216 LYS ALA LEU PHE ASP ALA LEU PRO GLY GLU HIS GLN TYR SEQRES 17 B 216 LEU PHE GLU ASP CYS LEU LYS HIS SEQRES 1 C 216 GLY PRO LEU GLY SER PRO GLU PHE MET GLU VAL ILE CYS SEQRES 2 C 216 LYS HIS TYR THR PRO LEU ASP ILE ALA SER GLN ALA ILE SEQRES 3 C 216 ARG THR CYS TRP GLN SER PHE GLU TYR SER ASP ASP GLY SEQRES 4 C 216 GLY CYS LYS ASP LYS GLU LEU ILE HIS ARG VAL GLY ASN SEQRES 5 C 216 ILE PHE ARG HIS SER SER THR LEU GLU HIS LEU TYR TYR SEQRES 6 C 216 ASN PHE GLU ILE LYS GLY LEU SER ARG GLY ALA LEU GLN SEQRES 7 C 216 GLU LEU SER ARG HIS ARG ILE ALA SER LEU SER VAL LYS SEQRES 8 C 216 SER SER ARG TYR THR LEU ARG GLU LEU LYS GLU VAL GLU SEQRES 9 C 216 SER PHE LEU PRO LEU ASN GLU THR ASN LEU GLU ARG ALA SEQRES 10 C 216 ARG GLU PHE LEU VAL PHE VAL ASP ASN GLU LYS VAL ASN SEQRES 11 C 216 ALA MET SER VAL LEU ALA LEU GLU ASN LEU ARG VAL LEU SEQRES 12 C 216 LEU SER GLU HIS ASN ILE LYS ASN ASP LEU ALA LYS TYR SEQRES 13 C 216 ALA MET PRO GLU SER TYR LYS THR HIS LEU ALA TYR SER SEQRES 14 C 216 ILE ASN ALA ARG SER LEU GLN ASN LEU LEU THR LEU ARG SEQRES 15 C 216 SER SER ASN LYS ALA LEU LYS GLU MET GLN ASP LEU ALA SEQRES 16 C 216 LYS ALA LEU PHE ASP ALA LEU PRO GLY GLU HIS GLN TYR SEQRES 17 C 216 LEU PHE GLU ASP CYS LEU LYS HIS SEQRES 1 D 216 GLY PRO LEU GLY SER PRO GLU PHE MET GLU VAL ILE CYS SEQRES 2 D 216 LYS HIS TYR THR PRO LEU ASP ILE ALA SER GLN ALA ILE SEQRES 3 D 216 ARG THR CYS TRP GLN SER PHE GLU TYR SER ASP ASP GLY SEQRES 4 D 216 GLY CYS LYS ASP LYS GLU LEU ILE HIS ARG VAL GLY ASN SEQRES 5 D 216 ILE PHE ARG HIS SER SER THR LEU GLU HIS LEU TYR TYR SEQRES 6 D 216 ASN PHE GLU ILE LYS GLY LEU SER ARG GLY ALA LEU GLN SEQRES 7 D 216 GLU LEU SER ARG HIS ARG ILE ALA SER LEU SER VAL LYS SEQRES 8 D 216 SER SER ARG TYR THR LEU ARG GLU LEU LYS GLU VAL GLU SEQRES 9 D 216 SER PHE LEU PRO LEU ASN GLU THR ASN LEU GLU ARG ALA SEQRES 10 D 216 ARG GLU PHE LEU VAL PHE VAL ASP ASN GLU LYS VAL ASN SEQRES 11 D 216 ALA MET SER VAL LEU ALA LEU GLU ASN LEU ARG VAL LEU SEQRES 12 D 216 LEU SER GLU HIS ASN ILE LYS ASN ASP LEU ALA LYS TYR SEQRES 13 D 216 ALA MET PRO GLU SER TYR LYS THR HIS LEU ALA TYR SER SEQRES 14 D 216 ILE ASN ALA ARG SER LEU GLN ASN LEU LEU THR LEU ARG SEQRES 15 D 216 SER SER ASN LYS ALA LEU LYS GLU MET GLN ASP LEU ALA SEQRES 16 D 216 LYS ALA LEU PHE ASP ALA LEU PRO GLY GLU HIS GLN TYR SEQRES 17 D 216 LEU PHE GLU ASP CYS LEU LYS HIS HET UMP A 305 20 HET FAD A 304 53 HET UMP B 301 20 HET UMP B 304 20 HET FAD B 209 53 HET UMP C 303 20 HET FAD C 302 53 HET UMP D 302 20 HET FAD D 303 53 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN UMP DUMP FORMUL 5 UMP 5(C9 H13 N2 O8 P) FORMUL 6 FAD 4(C27 H33 N9 O15 P2) FORMUL 14 HOH *147(H2 O) HELIX 1 1 LEU A 11 GLN A 23 1 13 HELIX 2 2 SER A 24 SER A 28 5 5 HELIX 3 3 GLY A 32 ASN A 44 1 13 HELIX 4 4 ILE A 45 HIS A 54 5 10 HELIX 5 5 ARG A 66 SER A 73 1 8 HELIX 6 6 SER A 84 LEU A 89 1 6 HELIX 7 7 ARG A 90 LYS A 93 5 4 HELIX 8 8 ASN A 102 ARG A 110 1 9 HELIX 9 9 ASN A 118 GLU A 138 1 21 HELIX 10 10 LYS A 142 LYS A 147 1 6 HELIX 11 11 TYR A 148 MET A 150 5 3 HELIX 12 12 ALA A 164 SER A 175 1 12 HELIX 13 13 LEU A 180 LEU A 194 1 15 HELIX 14 14 HIS A 198 PHE A 202 5 5 HELIX 15 15 LEU B 11 TRP B 22 1 12 HELIX 16 16 SER B 24 SER B 28 5 5 HELIX 17 17 GLY B 32 ILE B 45 1 14 HELIX 18 18 PHE B 46 HIS B 54 5 9 HELIX 19 19 ARG B 66 SER B 73 1 8 HELIX 20 20 SER B 84 LEU B 89 1 6 HELIX 21 21 ARG B 90 LYS B 93 5 4 HELIX 22 22 ASN B 102 ARG B 110 1 9 HELIX 23 23 ASN B 118 GLU B 138 1 21 HELIX 24 24 LYS B 142 LYS B 147 1 6 HELIX 25 25 TYR B 148 MET B 150 5 3 HELIX 26 26 ALA B 164 SER B 175 1 12 HELIX 27 27 LEU B 180 LEU B 194 1 15 HELIX 28 28 PRO B 195 LEU B 201 5 7 HELIX 29 29 PHE B 202 LYS B 207 1 6 HELIX 30 30 LEU C 11 GLN C 23 1 13 HELIX 31 31 SER C 24 SER C 28 5 5 HELIX 32 32 GLY C 32 ASN C 44 1 13 HELIX 33 33 ILE C 45 HIS C 54 5 10 HELIX 34 34 ARG C 66 SER C 73 1 8 HELIX 35 35 SER C 84 LEU C 89 1 6 HELIX 36 36 ARG C 90 LYS C 93 5 4 HELIX 37 37 ASN C 102 ARG C 110 1 9 HELIX 38 38 ASN C 118 GLU C 138 1 21 HELIX 39 39 LYS C 142 LYS C 147 1 6 HELIX 40 40 TYR C 148 MET C 150 5 3 HELIX 41 41 ALA C 164 SER C 175 1 12 HELIX 42 42 LEU C 180 LEU C 194 1 15 HELIX 43 43 PRO C 195 TYR C 200 1 6 HELIX 44 44 LEU C 201 LYS C 207 5 7 HELIX 45 45 PRO D 10 GLN D 23 1 14 HELIX 46 46 SER D 24 SER D 28 5 5 HELIX 47 47 GLY D 32 ASN D 44 1 13 HELIX 48 48 ILE D 45 HIS D 54 5 10 HELIX 49 49 ARG D 66 SER D 73 1 8 HELIX 50 50 SER D 84 LEU D 89 1 6 HELIX 51 51 ARG D 90 GLU D 94 5 5 HELIX 52 52 ASN D 102 GLU D 111 1 10 HELIX 53 53 ASN D 118 GLU D 138 1 21 HELIX 54 54 LYS D 142 LYS D 147 1 6 HELIX 55 55 TYR D 148 MET D 150 5 3 HELIX 56 56 ALA D 164 SER D 175 1 12 HELIX 57 57 LEU D 180 LEU D 194 1 15 HELIX 58 58 HIS D 198 LEU D 201 5 4 HELIX 59 59 PHE D 202 LYS D 207 1 6 SHEET 1 A 4 GLU A 2 TYR A 8 0 SHEET 2 A 4 TYR A 56 SER A 65 -1 O ASN A 58 N HIS A 7 SHEET 3 A 4 LYS A 155 ASN A 163 -1 O TYR A 160 N PHE A 59 SHEET 4 A 4 SER A 79 VAL A 82 -1 N SER A 79 O SER A 161 SHEET 1 B 4 GLU B 2 TYR B 8 0 SHEET 2 B 4 TYR B 56 SER B 65 -1 O LYS B 62 N GLU B 2 SHEET 3 B 4 LYS B 155 ASN B 163 -1 O THR B 156 N LEU B 64 SHEET 4 B 4 SER B 79 VAL B 82 -1 N SER B 79 O SER B 161 SHEET 1 C 4 GLU C 2 TYR C 8 0 SHEET 2 C 4 TYR C 56 SER C 65 -1 O ASN C 58 N HIS C 7 SHEET 3 C 4 LYS C 155 ASN C 163 -1 O TYR C 160 N PHE C 59 SHEET 4 C 4 SER C 79 VAL C 82 -1 N SER C 79 O SER C 161 SHEET 1 D 4 GLU D 2 TYR D 8 0 SHEET 2 D 4 TYR D 56 SER D 65 -1 O LYS D 62 N GLU D 2 SHEET 3 D 4 LYS D 155 ASN D 163 -1 O TYR D 160 N PHE D 59 SHEET 4 D 4 SER D 79 VAL D 82 -1 N SER D 79 O SER D 161 CISPEP 1 LEU A 99 PRO A 100 0 4.44 CISPEP 2 LEU B 99 PRO B 100 0 3.85 CISPEP 3 LEU C 99 PRO C 100 0 -0.35 CISPEP 4 LEU D 99 PRO D 100 0 2.83 SITE 1 AC1 14 ARG A 66 VAL A 82 LYS A 83 SER A 84 SITE 2 AC1 14 SER A 85 ARG A 86 LYS A 147 GLU B 71 SITE 3 AC1 14 ARG B 74 ARG B 174 FAD B 209 HOH B 214 SITE 4 AC1 14 HOH B 216 HOH B 224 SITE 1 AC2 13 GLU C 71 ARG C 74 ARG C 174 HOH C 221 SITE 2 AC2 13 FAD C 302 ARG D 66 LYS D 83 SER D 84 SITE 3 AC2 13 SER D 85 ARG D 86 LYS D 147 HOH D 210 SITE 4 AC2 13 HOH D 228 SITE 1 AC3 13 ARG C 66 LYS C 83 SER C 84 SER C 85 SITE 2 AC3 13 ARG C 86 LYS C 147 GLU D 71 ARG D 74 SITE 3 AC3 13 ARG D 174 HOH D 209 HOH D 211 HOH D 239 SITE 4 AC3 13 FAD D 303 SITE 1 AC4 14 GLU A 71 ARG A 74 ARG A 174 HOH A 218 SITE 2 AC4 14 FAD A 304 ARG B 66 VAL B 82 LYS B 83 SITE 3 AC4 14 SER B 84 SER B 85 ARG B 86 LYS B 147 SITE 4 AC4 14 HOH B 210 HOH B 211 SITE 1 AC5 3 HIS A 7 TYR A 8 PRO A 10 SITE 1 AC6 23 SER A 81 VAL A 82 SER A 84 HOH A 224 SITE 2 AC6 23 ARG B 74 HIS B 75 ARG B 76 ILE B 77 SITE 3 AC6 23 ASN B 169 ARG B 174 HOH B 212 HOH B 233 SITE 4 AC6 23 UMP B 301 CYS D 21 PHE D 46 ARG D 47 SITE 5 AC6 23 SER D 50 GLU D 53 ILE D 77 ASN D 163 SITE 6 AC6 23 ARG D 165 SER D 166 FAD D 303 SITE 1 AC7 25 CYS A 21 PHE A 46 ARG A 47 SER A 50 SITE 2 AC7 25 GLU A 53 ILE A 77 ASN A 163 ARG A 165 SITE 3 AC7 25 HOH A 234 FAD A 304 ARG C 74 HIS C 75 SITE 4 AC7 25 ARG C 76 ILE C 77 ASN C 169 ARG C 174 SITE 5 AC7 25 LYS C 178 HOH C 213 HOH C 215 HOH C 220 SITE 6 AC7 25 HOH C 224 SER D 81 VAL D 82 SER D 84 SITE 7 AC7 25 UMP D 302 SITE 1 AC8 22 PHE B 46 ARG B 47 SER B 50 GLU B 53 SITE 2 AC8 22 ILE B 77 ASN B 163 ARG B 165 FAD B 209 SITE 3 AC8 22 HOH B 247 SER C 81 VAL C 82 SER C 84 SITE 4 AC8 22 UMP C 303 ARG D 74 HIS D 75 ARG D 76 SITE 5 AC8 22 ILE D 77 ASN D 169 ARG D 174 LYS D 178 SITE 6 AC8 22 HOH D 214 HOH D 229 SITE 1 AC9 23 ARG A 74 HIS A 75 ARG A 76 ILE A 77 SITE 2 AC9 23 ASN A 169 ARG A 174 HOH A 226 HOH A 239 SITE 3 AC9 23 HOH A 242 SER B 81 VAL B 82 SER B 84 SITE 4 AC9 23 TYR B 87 UMP B 304 CYS C 21 PHE C 46 SITE 5 AC9 23 ARG C 47 SER C 50 GLU C 53 ILE C 77 SITE 6 AC9 23 ASN C 163 ARG C 165 FAD C 302 CRYST1 65.525 79.956 96.405 90.00 103.14 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015261 0.000000 0.003562 0.00000 SCALE2 0.000000 0.012507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010652 0.00000