HEADER HYDROLASE 25-MAY-10 3N5F TITLE CRYSTAL STRUCTURE OF L-N-CARBAMOYLASE FROM GEOBACILLUS TITLE 2 STEAROTHERMOPHILUS CECT43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-CARBAMOYL-L-AMINO ACID HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-CARBAMOYLASE; COMPND 5 EC: 3.5.1.87; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_COMMON: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 1422; SOURCE 5 STRAIN: CECT43; SOURCE 6 GENE: AMAB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS CARBAMOYLASE, HINGE DOMAIN, M20 PEPTIDASE FAMILY, EVOLUTION, BINDING KEYWDS 2 RESIDUE, DIMERIZATION DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO,S.MARTINEZ-RODRIGUEZ,J.A.GAVIRA REVDAT 4 06-SEP-23 3N5F 1 REMARK LINK REVDAT 3 14-NOV-12 3N5F 1 JRNL REVDAT 2 31-OCT-12 3N5F 1 JRNL VERSN REVDAT 1 25-MAY-11 3N5F 0 JRNL AUTH S.MARTINEZ-RODRIGUEZ,A.GARCIA-PINO,F.J.LAS HERAS-VAZQUEZ, JRNL AUTH 2 J.M.CLEMENTE-JIMENEZ,F.RODRIGUEZ-VICO,J.M.GARCIA-RUIZ, JRNL AUTH 3 R.LORIS,J.A.GAVIRA JRNL TITL MUTATIONAL AND STRUCTURAL ANALYSIS OF L-N-CARBAMOYLASE JRNL TITL 2 REVEALS NEW INSIGHTS INTO A PEPTIDASE M20/M25/M40 FAMILY JRNL TITL 3 MEMBER. JRNL REF J.BACTERIOL. V. 194 5759 2012 JRNL REFN ISSN 0021-9193 JRNL PMID 22904279 JRNL DOI 10.1128/JB.01056-12 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.MARTINEZ-RODRIGUEZ,A.GARCIA-PINO,F.J.LAS HERAS-VAZQUEZ, REMARK 1 AUTH 2 J.M.CLEMENTE-JIMENEZ,F.RODRIGUEZ-VICO,R.LORIS, REMARK 1 AUTH 3 J.M.GARCIA-RUIZ,J.A.GAVIRA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC STUDIES OF REMARK 1 TITL 2 THE RECOMBINANT L-N-CARBAMOYLASE FROM GEOBACILLUS REMARK 1 TITL 3 STEAROTHERMOPHILUS CECT43. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 1135 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19052368 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.396 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.811 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6201 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8450 ; 1.556 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 829 ; 6.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.850 ;23.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 979 ;19.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 972 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4704 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4051 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6485 ; 1.075 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2150 ; 1.581 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 2.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MONTEL OPTICS REMARK 200 OPTICS : KAPPA CONFIGURATION REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 73.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.260 REMARK 200 R MERGE (I) : 0.12380 REMARK 200 R SYM (I) : 0.12380 REMARK 200 FOR THE DATA SET : 15.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.92 REMARK 200 R MERGE FOR SHELL (I) : 0.25780 REMARK 200 R SYM FOR SHELL (I) : 0.25780 REMARK 200 FOR SHELL : 4.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Z2L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % ISO-PROPANOL, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5 AND 0.6 M TRISODIUM CITRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.60400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 105.84150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.60400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 105.84150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 GLU A 13 OE1 OE2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 ARG A 36 NE CZ NH1 NH2 REMARK 470 ARG A 46 CZ NH1 NH2 REMARK 470 GLU A 149 OE1 OE2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 156 CG1 CG2 CD1 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LYS A 289 CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLN A 295 CD OE1 NE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ARG A 319 NE CZ NH1 NH2 REMARK 470 GLU A 322 OE1 OE2 REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 337 OE1 OE2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 GLN A 360 OE1 NE2 REMARK 470 LYS A 388 CE NZ REMARK 470 GLU A 396 OE1 OE2 REMARK 470 ARG B 36 NE CZ NH1 NH2 REMARK 470 GLU B 47 CD OE1 OE2 REMARK 470 ARG B 130 NE CZ NH1 NH2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 GLU B 154 CD OE1 OE2 REMARK 470 GLU B 160 CD OE1 OE2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLN B 164 CG CD OE1 NE2 REMARK 470 GLU B 198 CD OE1 OE2 REMARK 470 ARG B 235 CD NE CZ NH1 NH2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 LYS B 298 CE NZ REMARK 470 GLU B 305 OE1 OE2 REMARK 470 LYS B 309 CE NZ REMARK 470 GLN B 321 OE1 NE2 REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 ARG B 334 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 341 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 38 O HOH B 483 1.47 REMARK 500 OG1 THR B 122 O HOH B 483 1.69 REMARK 500 OD2 ASP A 168 OD2 ASP A 170 2.05 REMARK 500 OE2 GLU B 318 O HOH B 489 2.12 REMARK 500 NE2 GLN B 9 O HOH B 431 2.15 REMARK 500 OE1 GLN B 9 O HOH B 485 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 314 OE2 GLU B 322 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 350 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG B 6 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU B 212 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU B 350 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 78 -136.41 -165.79 REMARK 500 ASP A 90 99.43 -63.82 REMARK 500 ASP A 123 70.22 49.77 REMARK 500 SER B 78 -149.17 176.62 REMARK 500 ASN B 85 75.43 -116.87 REMARK 500 ASP B 123 70.35 47.01 REMARK 500 ARG B 130 25.08 48.48 REMARK 500 GLU B 224 146.00 -172.30 REMARK 500 LEU B 265 114.19 -163.66 REMARK 500 ASP B 376 17.70 53.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 410 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 ASP A 90 OD2 82.6 REMARK 620 3 HIS A 189 NE2 117.0 71.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 411 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 ASP B 90 OD2 76.5 REMARK 620 3 HIS B 189 NE2 122.0 77.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 411 DBREF 3N5F A 1 408 UNP Q53389 AMAB2_BACST 1 408 DBREF 3N5F B 1 408 UNP Q53389 AMAB2_BACST 1 408 SEQRES 1 A 408 MET ILE GLN GLY GLU ARG LEU TRP GLN ARG LEU MET GLU SEQRES 2 A 408 LEU GLY GLU VAL GLY LYS GLN PRO SER GLY GLY VAL THR SEQRES 3 A 408 ARG LEU SER PHE THR ALA GLU GLU ARG ARG ALA LYS ASP SEQRES 4 A 408 LEU VAL ALA SER TYR MET ARG GLU ALA GLY LEU PHE VAL SEQRES 5 A 408 TYR GLU ASP ALA ALA GLY ASN LEU ILE GLY ARG LYS GLU SEQRES 6 A 408 GLY THR ASN PRO ASP ALA THR VAL VAL LEU VAL GLY SER SEQRES 7 A 408 HIS LEU ASP SER VAL TYR ASN GLY GLY CYS PHE ASP GLY SEQRES 8 A 408 PRO LEU GLY VAL LEU ALA GLY VAL GLU VAL VAL GLN THR SEQRES 9 A 408 MET ASN GLU HIS GLY VAL VAL THR HIS HIS PRO ILE GLU SEQRES 10 A 408 VAL VAL ALA PHE THR ASP GLU GLU GLY ALA ARG PHE ARG SEQRES 11 A 408 PHE GLY MET ILE GLY SER ARG ALA MET ALA GLY THR LEU SEQRES 12 A 408 PRO PRO GLU ALA LEU GLU CYS ARG ASP ALA GLU GLY ILE SEQRES 13 A 408 SER LEU ALA GLU ALA MET LYS GLN ALA GLY LEU ASP PRO SEQRES 14 A 408 ASP ARG LEU PRO GLN ALA ALA ARG LYS PRO GLY THR VAL SEQRES 15 A 408 LYS ALA TYR VAL GLU LEU HIS ILE GLU GLN GLY ARG VAL SEQRES 16 A 408 LEU GLU GLU THR GLY LEU PRO VAL GLY ILE VAL THR GLY SEQRES 17 A 408 ILE ALA GLY LEU ILE TRP VAL LYS PHE THR ILE GLU GLY SEQRES 18 A 408 LYS ALA GLU HIS ALA GLY ALA THR PRO MET SER LEU ARG SEQRES 19 A 408 ARG ASP PRO MET ALA ALA ALA ALA GLN ILE ILE ILE VAL SEQRES 20 A 408 ILE GLU GLU GLU ALA ARG ARG THR GLY THR THR VAL GLY SEQRES 21 A 408 THR VAL GLY GLN LEU HIS VAL TYR PRO GLY GLY ILE ASN SEQRES 22 A 408 VAL ILE PRO GLU ARG VAL GLU PHE VAL LEU ASP LEU ARG SEQRES 23 A 408 ASP LEU LYS ALA GLU VAL ARG ASP GLN VAL TRP LYS ALA SEQRES 24 A 408 ILE ALA VAL ARG ALA GLU THR ILE ALA LYS GLU ARG ASN SEQRES 25 A 408 VAL ARG VAL THR THR GLU ARG LEU GLN GLU MET PRO PRO SEQRES 26 A 408 VAL LEU CYS SER ASP GLU VAL LYS ARG ALA ALA GLU ALA SEQRES 27 A 408 ALA CYS GLN LYS LEU GLY TYR PRO SER PHE TRP LEU PRO SEQRES 28 A 408 SER GLY ALA ALA HIS ASP SER VAL GLN LEU ALA PRO ILE SEQRES 29 A 408 CYS PRO ILE GLY MET ILE PHE VAL ARG SER GLN ASP GLY SEQRES 30 A 408 VAL SER HIS SER PRO ALA GLU TRP SER THR LYS GLU ASP SEQRES 31 A 408 CYS ALA ALA GLY ALA GLU VAL LEU TYR HIS THR VAL TRP SEQRES 32 A 408 GLN LEU ALA GLN GLY SEQRES 1 B 408 MET ILE GLN GLY GLU ARG LEU TRP GLN ARG LEU MET GLU SEQRES 2 B 408 LEU GLY GLU VAL GLY LYS GLN PRO SER GLY GLY VAL THR SEQRES 3 B 408 ARG LEU SER PHE THR ALA GLU GLU ARG ARG ALA LYS ASP SEQRES 4 B 408 LEU VAL ALA SER TYR MET ARG GLU ALA GLY LEU PHE VAL SEQRES 5 B 408 TYR GLU ASP ALA ALA GLY ASN LEU ILE GLY ARG LYS GLU SEQRES 6 B 408 GLY THR ASN PRO ASP ALA THR VAL VAL LEU VAL GLY SER SEQRES 7 B 408 HIS LEU ASP SER VAL TYR ASN GLY GLY CYS PHE ASP GLY SEQRES 8 B 408 PRO LEU GLY VAL LEU ALA GLY VAL GLU VAL VAL GLN THR SEQRES 9 B 408 MET ASN GLU HIS GLY VAL VAL THR HIS HIS PRO ILE GLU SEQRES 10 B 408 VAL VAL ALA PHE THR ASP GLU GLU GLY ALA ARG PHE ARG SEQRES 11 B 408 PHE GLY MET ILE GLY SER ARG ALA MET ALA GLY THR LEU SEQRES 12 B 408 PRO PRO GLU ALA LEU GLU CYS ARG ASP ALA GLU GLY ILE SEQRES 13 B 408 SER LEU ALA GLU ALA MET LYS GLN ALA GLY LEU ASP PRO SEQRES 14 B 408 ASP ARG LEU PRO GLN ALA ALA ARG LYS PRO GLY THR VAL SEQRES 15 B 408 LYS ALA TYR VAL GLU LEU HIS ILE GLU GLN GLY ARG VAL SEQRES 16 B 408 LEU GLU GLU THR GLY LEU PRO VAL GLY ILE VAL THR GLY SEQRES 17 B 408 ILE ALA GLY LEU ILE TRP VAL LYS PHE THR ILE GLU GLY SEQRES 18 B 408 LYS ALA GLU HIS ALA GLY ALA THR PRO MET SER LEU ARG SEQRES 19 B 408 ARG ASP PRO MET ALA ALA ALA ALA GLN ILE ILE ILE VAL SEQRES 20 B 408 ILE GLU GLU GLU ALA ARG ARG THR GLY THR THR VAL GLY SEQRES 21 B 408 THR VAL GLY GLN LEU HIS VAL TYR PRO GLY GLY ILE ASN SEQRES 22 B 408 VAL ILE PRO GLU ARG VAL GLU PHE VAL LEU ASP LEU ARG SEQRES 23 B 408 ASP LEU LYS ALA GLU VAL ARG ASP GLN VAL TRP LYS ALA SEQRES 24 B 408 ILE ALA VAL ARG ALA GLU THR ILE ALA LYS GLU ARG ASN SEQRES 25 B 408 VAL ARG VAL THR THR GLU ARG LEU GLN GLU MET PRO PRO SEQRES 26 B 408 VAL LEU CYS SER ASP GLU VAL LYS ARG ALA ALA GLU ALA SEQRES 27 B 408 ALA CYS GLN LYS LEU GLY TYR PRO SER PHE TRP LEU PRO SEQRES 28 B 408 SER GLY ALA ALA HIS ASP SER VAL GLN LEU ALA PRO ILE SEQRES 29 B 408 CYS PRO ILE GLY MET ILE PHE VAL ARG SER GLN ASP GLY SEQRES 30 B 408 VAL SER HIS SER PRO ALA GLU TRP SER THR LYS GLU ASP SEQRES 31 B 408 CYS ALA ALA GLY ALA GLU VAL LEU TYR HIS THR VAL TRP SEQRES 32 B 408 GLN LEU ALA GLN GLY HET IPA A 409 4 HET CO A 410 1 HET IPA B 409 4 HET CAC B 410 5 HET CO B 411 1 HETNAM IPA ISOPROPYL ALCOHOL HETNAM CO COBALT (II) ION HETNAM CAC CACODYLATE ION HETSYN IPA 2-PROPANOL HETSYN CAC DIMETHYLARSINATE FORMUL 3 IPA 2(C3 H8 O) FORMUL 4 CO 2(CO 2+) FORMUL 6 CAC C2 H6 AS O2 1- FORMUL 8 HOH *128(H2 O) HELIX 1 1 GLN A 3 GLU A 16 1 14 HELIX 2 2 THR A 31 GLY A 49 1 19 HELIX 3 3 GLY A 91 HIS A 108 1 18 HELIX 4 4 MET A 133 GLY A 141 1 9 HELIX 5 5 PRO A 144 GLU A 149 5 6 HELIX 6 6 SER A 157 ALA A 165 1 9 HELIX 7 7 ASP A 168 ALA A 176 5 9 HELIX 8 8 ARG A 194 GLY A 200 1 7 HELIX 9 9 ASP A 236 GLY A 256 1 21 HELIX 10 10 LYS A 289 ASN A 312 1 24 HELIX 11 11 SER A 329 GLY A 344 1 16 HELIX 12 12 SER A 374 VAL A 378 5 5 HELIX 13 13 THR A 387 ALA A 406 1 20 HELIX 14 14 GLY B 4 GLY B 15 1 12 HELIX 15 15 THR B 31 ALA B 48 1 18 HELIX 16 16 GLY B 91 HIS B 108 1 18 HELIX 17 17 MET B 133 GLY B 141 1 9 HELIX 18 18 PRO B 144 CYS B 150 5 7 HELIX 19 19 SER B 157 ALA B 165 1 9 HELIX 20 20 ASP B 168 ALA B 176 5 9 HELIX 21 21 ARG B 194 GLY B 200 1 7 HELIX 22 22 PRO B 230 ARG B 234 5 5 HELIX 23 23 ASP B 236 THR B 255 1 20 HELIX 24 24 LYS B 289 ASN B 312 1 24 HELIX 25 25 SER B 329 GLY B 344 1 16 HELIX 26 26 ASP B 357 ALA B 362 1 6 HELIX 27 27 SER B 374 VAL B 378 5 5 HELIX 28 28 THR B 387 ALA B 406 1 20 SHEET 1 A 8 PHE A 51 GLU A 54 0 SHEET 2 A 8 LEU A 60 LYS A 64 -1 O ILE A 61 N TYR A 53 SHEET 3 A 8 ILE A 116 PHE A 121 -1 O ILE A 116 N LYS A 64 SHEET 4 A 8 VAL A 73 HIS A 79 1 N VAL A 76 O VAL A 119 SHEET 5 A 8 VAL A 182 ILE A 190 1 O ALA A 184 N LEU A 75 SHEET 6 A 8 ILE A 367 VAL A 372 1 O ILE A 370 N HIS A 189 SHEET 7 A 8 VAL A 203 ILE A 209 -1 N GLY A 204 O PHE A 371 SHEET 8 A 8 VAL A 326 LEU A 327 -1 O VAL A 326 N ILE A 209 SHEET 1 B 8 PHE A 51 GLU A 54 0 SHEET 2 B 8 LEU A 60 LYS A 64 -1 O ILE A 61 N TYR A 53 SHEET 3 B 8 ILE A 116 PHE A 121 -1 O ILE A 116 N LYS A 64 SHEET 4 B 8 VAL A 73 HIS A 79 1 N VAL A 76 O VAL A 119 SHEET 5 B 8 VAL A 182 ILE A 190 1 O ALA A 184 N LEU A 75 SHEET 6 B 8 ILE A 367 VAL A 372 1 O ILE A 370 N HIS A 189 SHEET 7 B 8 VAL A 203 ILE A 209 -1 N GLY A 204 O PHE A 371 SHEET 8 B 8 TRP A 349 SER A 352 1 O SER A 352 N GLY A 208 SHEET 1 C 4 VAL A 259 TYR A 268 0 SHEET 2 C 4 ARG A 278 ASP A 287 -1 O ASP A 284 N THR A 261 SHEET 3 C 4 GLY A 211 GLU A 220 -1 N GLY A 211 O ASP A 287 SHEET 4 C 4 ARG A 314 MET A 323 -1 O LEU A 320 N TRP A 214 SHEET 1 D 2 GLU A 224 HIS A 225 0 SHEET 2 D 2 VAL A 274 ILE A 275 -1 O ILE A 275 N GLU A 224 SHEET 1 E 8 PHE B 51 GLU B 54 0 SHEET 2 E 8 LEU B 60 LYS B 64 -1 O ILE B 61 N TYR B 53 SHEET 3 E 8 ILE B 116 PHE B 121 -1 O VAL B 118 N GLY B 62 SHEET 4 E 8 VAL B 73 HIS B 79 1 N VAL B 76 O GLU B 117 SHEET 5 E 8 VAL B 182 ILE B 190 1 O ALA B 184 N LEU B 75 SHEET 6 E 8 ILE B 367 VAL B 372 1 O ILE B 370 N HIS B 189 SHEET 7 E 8 VAL B 203 ILE B 209 -1 N GLY B 204 O PHE B 371 SHEET 8 E 8 VAL B 326 LEU B 327 -1 O VAL B 326 N ILE B 209 SHEET 1 F 8 PHE B 51 GLU B 54 0 SHEET 2 F 8 LEU B 60 LYS B 64 -1 O ILE B 61 N TYR B 53 SHEET 3 F 8 ILE B 116 PHE B 121 -1 O VAL B 118 N GLY B 62 SHEET 4 F 8 VAL B 73 HIS B 79 1 N VAL B 76 O GLU B 117 SHEET 5 F 8 VAL B 182 ILE B 190 1 O ALA B 184 N LEU B 75 SHEET 6 F 8 ILE B 367 VAL B 372 1 O ILE B 370 N HIS B 189 SHEET 7 F 8 VAL B 203 ILE B 209 -1 N GLY B 204 O PHE B 371 SHEET 8 F 8 TRP B 349 SER B 352 1 O SER B 352 N GLY B 208 SHEET 1 G 4 VAL B 259 TYR B 268 0 SHEET 2 G 4 ARG B 278 ASP B 287 -1 O ASP B 284 N THR B 261 SHEET 3 G 4 GLY B 211 GLU B 220 -1 N PHE B 217 O PHE B 281 SHEET 4 G 4 ARG B 314 MET B 323 -1 O LEU B 320 N TRP B 214 SHEET 1 H 2 GLU B 224 HIS B 225 0 SHEET 2 H 2 VAL B 274 ILE B 275 -1 O ILE B 275 N GLU B 224 LINK NE2 HIS A 79 CO CO A 410 1555 1555 2.09 LINK OD2 ASP A 90 CO CO A 410 1555 1555 2.18 LINK NE2 HIS A 189 CO CO A 410 1555 1555 2.31 LINK NE2 HIS B 79 CO CO B 411 1555 1555 2.35 LINK OD2 ASP B 90 CO CO B 411 1555 1555 2.11 LINK NE2 HIS B 189 CO CO B 411 1555 1555 2.23 CISPEP 1 TYR A 268 PRO A 269 0 7.04 CISPEP 2 TYR B 268 PRO B 269 0 5.61 SITE 1 AC1 3 GLY A 227 THR B 257 PRO B 351 SITE 1 AC2 4 HIS A 79 ASP A 90 GLU A 124 HIS A 189 SITE 1 AC3 3 LEU B 50 ARG B 303 THR B 306 SITE 1 AC4 5 HIS A 225 ASN A 273 ALA B 354 ALA B 355 SITE 2 AC4 5 HIS B 380 SITE 1 AC5 4 HIS B 79 ASP B 90 GLU B 124 HIS B 189 CRYST1 103.208 211.683 43.091 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023207 0.00000