HEADER TRANSFERASE 25-MAY-10 3N5O TITLE CRYSTAL STRUCTURE OF PUTATIVE GLUTATHIONE TRANSFERASE FROM TITLE 2 COCCIDIOIDES IMMITIS BOUND TO GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COCCIDIOIDES IMMITIS; SOURCE 3 ORGANISM_TAXID: 5501; SOURCE 4 GENE: COI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 GST, GLUTATHIONE, TRANSFERASE, PATHOGENIC FUNGUS, KEYWDS 3 COCCIDIOIDOMYCOSIS, VALLEY FEVER, MENINGITIS EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3N5O 1 REMARK REVDAT 3 21-DEC-11 3N5O 1 HETATM REVDAT 2 21-SEP-11 3N5O 1 JRNL VERSN REVDAT 1 16-JUN-10 3N5O 0 JRNL AUTH T.E.EDWARDS,C.M.BRYAN,D.J.LEIBLY,S.H.DIETERICH,J.ABENDROTH, JRNL AUTH 2 B.SANKARAN,D.SIVAM,B.L.STAKER,W.C.VAN VOORHIS,P.J.MYLER, JRNL AUTH 3 L.J.STEWART JRNL TITL STRUCTURES OF A PUTATIVE ZETA-CLASS GLUTATHIONE JRNL TITL 2 S-TRANSFERASE FROM THE PATHOGENIC FUNGUS COCCIDIOIDES JRNL TITL 3 IMMITIS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1038 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904047 JRNL DOI 10.1107/S1744309111009493 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 39566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3544 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4838 ; 1.377 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 5.412 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;31.525 ;23.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 582 ;12.010 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2667 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2235 ; 0.749 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3630 ; 1.298 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 2.245 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1203 ; 3.643 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7896 25.2398 17.4611 REMARK 3 T TENSOR REMARK 3 T11: 0.0251 T22: 0.0063 REMARK 3 T33: 0.0150 T12: 0.0075 REMARK 3 T13: 0.0122 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.2631 L22: 0.3467 REMARK 3 L33: 0.2912 L12: -0.0279 REMARK 3 L13: -0.0559 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.0106 S13: 0.0390 REMARK 3 S21: -0.0274 S22: 0.0040 S23: -0.0154 REMARK 3 S31: -0.0597 S32: -0.0369 S33: -0.0364 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1107 4.4577 22.7053 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0205 REMARK 3 T33: 0.0196 T12: 0.0023 REMARK 3 T13: -0.0041 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.0946 L22: 0.2041 REMARK 3 L33: 0.4675 L12: -0.0272 REMARK 3 L13: -0.0330 L23: -0.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0134 S13: -0.0138 REMARK 3 S21: -0.0001 S22: 0.0116 S23: -0.0462 REMARK 3 S31: 0.0401 S32: 0.0037 S33: -0.0181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3N5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3LG6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23.9 MG/ML PROTEIN, 0.2 M AMMONIUM REMARK 280 SULFATE, 30% PEG 8000, 25% ETHYLENE GLYCOL AS CRYO-PROTECTANT, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.24500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.80500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.46500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.24500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.80500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.46500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.24500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 528 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 231 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 GLU B 42 REMARK 465 GLN B 43 REMARK 465 HIS B 44 REMARK 465 SER B 45 REMARK 465 ASP B 46 REMARK 465 THR B 47 REMARK 465 TYR B 48 REMARK 465 LYS B 49 REMARK 465 SER B 50 REMARK 465 LEU B 51 REMARK 465 ASN B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 34 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 46 CG OD1 OD2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 ASN B 37 CG OD1 ND2 REMARK 470 LEU B 39 CG CD1 CD2 REMARK 470 ASN B 55 CG OD1 ND2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 101 153.91 -49.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 693 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LG6 RELATED DB: PDB REMARK 900 APO STRUCTURE SAME PROTEIN, DIFFERENT CRYSTAL FORM REMARK 900 RELATED ID: COIMA.00410.A RELATED DB: TARGETDB DBREF 3N5O A -3 231 UNP D2YW48 D2YW48_COCIM 1 235 DBREF 3N5O B -3 231 UNP D2YW48 D2YW48_COCIM 1 235 SEQRES 1 A 235 GLY PRO GLY SER MET THR THR PRO ASN PHE GLU LEU TYR SEQRES 2 A 235 GLY TYR PHE ARG SER SER CYS SER GLY ARG LEU ARG ILE SEQRES 3 A 235 ALA PHE HIS LEU LYS SER ILE PRO TYR THR ARG HIS PRO SEQRES 4 A 235 VAL ASN LEU LEU LYS GLY GLU GLN HIS SER ASP THR TYR SEQRES 5 A 235 LYS SER LEU ASN PRO THR ASN THR VAL PRO LEU LEU VAL SEQRES 6 A 235 VAL SER ASN ILE ASN ASN THR VAL SER PRO SER SER ALA SEQRES 7 A 235 SER PHE SER ILE GLY GLN SER LEU ALA ALA LEU GLU TYR SEQRES 8 A 235 LEU GLU GLU ALA LEU PRO THR ASN ALA ARG PRO LEU LEU SEQRES 9 A 235 PRO PRO ILE SER ASN PRO VAL ALA ARG ALA HIS VAL ARG SEQRES 10 A 235 THR ILE CYS ASN ILE ILE ALA CYS ASP VAL GLN PRO VAL SEQRES 11 A 235 THR ASN LEU LYS ILE GLN LYS LYS VAL LYS ALA LEU ASP SEQRES 12 A 235 GLY ASP PRO THR VAL TRP SER ARG ASP LEU ALA THR GLN SEQRES 13 A 235 GLY PHE GLY ALA VAL GLU LYS LEU LEU GLU LEU SER ALA SEQRES 14 A 235 GLY ARG PHE CYS VAL GLY ASP GLU ILE THR LEU ALA ASP SEQRES 15 A 235 VAL CYS LEU VAL PRO ALA VAL TRP ALA ALA GLU ARG VAL SEQRES 16 A 235 GLY MET ASP LEU ALA ARG PHE PRO ILE THR LYS ARG VAL SEQRES 17 A 235 PHE GLU GLU MET LEU LYS GLU GLU ALA VAL GLN LYS ALA SEQRES 18 A 235 HIS TRP GLN LYS GLN GLU ASP THR PRO GLU ASP LEU ARG SEQRES 19 A 235 ALA SEQRES 1 B 235 GLY PRO GLY SER MET THR THR PRO ASN PHE GLU LEU TYR SEQRES 2 B 235 GLY TYR PHE ARG SER SER CYS SER GLY ARG LEU ARG ILE SEQRES 3 B 235 ALA PHE HIS LEU LYS SER ILE PRO TYR THR ARG HIS PRO SEQRES 4 B 235 VAL ASN LEU LEU LYS GLY GLU GLN HIS SER ASP THR TYR SEQRES 5 B 235 LYS SER LEU ASN PRO THR ASN THR VAL PRO LEU LEU VAL SEQRES 6 B 235 VAL SER ASN ILE ASN ASN THR VAL SER PRO SER SER ALA SEQRES 7 B 235 SER PHE SER ILE GLY GLN SER LEU ALA ALA LEU GLU TYR SEQRES 8 B 235 LEU GLU GLU ALA LEU PRO THR ASN ALA ARG PRO LEU LEU SEQRES 9 B 235 PRO PRO ILE SER ASN PRO VAL ALA ARG ALA HIS VAL ARG SEQRES 10 B 235 THR ILE CYS ASN ILE ILE ALA CYS ASP VAL GLN PRO VAL SEQRES 11 B 235 THR ASN LEU LYS ILE GLN LYS LYS VAL LYS ALA LEU ASP SEQRES 12 B 235 GLY ASP PRO THR VAL TRP SER ARG ASP LEU ALA THR GLN SEQRES 13 B 235 GLY PHE GLY ALA VAL GLU LYS LEU LEU GLU LEU SER ALA SEQRES 14 B 235 GLY ARG PHE CYS VAL GLY ASP GLU ILE THR LEU ALA ASP SEQRES 15 B 235 VAL CYS LEU VAL PRO ALA VAL TRP ALA ALA GLU ARG VAL SEQRES 16 B 235 GLY MET ASP LEU ALA ARG PHE PRO ILE THR LYS ARG VAL SEQRES 17 B 235 PHE GLU GLU MET LEU LYS GLU GLU ALA VAL GLN LYS ALA SEQRES 18 B 235 HIS TRP GLN LYS GLN GLU ASP THR PRO GLU ASP LEU ARG SEQRES 19 B 235 ALA HET GSH A 232 20 HET SO4 A 233 5 HET SO4 B 233 5 HET SO4 B 693 5 HETNAM GSH GLUTATHIONE HETNAM SO4 SULFATE ION FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *460(H2 O) HELIX 1 1 SER A 14 LYS A 27 1 14 HELIX 2 2 ASN A 37 HIS A 44 5 8 HELIX 3 3 SER A 45 ASN A 52 1 8 HELIX 4 4 GLN A 80 LEU A 92 1 13 HELIX 5 5 ASN A 105 VAL A 123 1 19 HELIX 6 6 GLN A 124 THR A 127 5 4 HELIX 7 7 ASN A 128 LEU A 138 1 11 HELIX 8 8 ASP A 141 ALA A 165 1 25 HELIX 9 9 THR A 175 VAL A 191 1 17 HELIX 10 10 ASP A 194 ARG A 197 5 4 HELIX 11 11 PHE A 198 LYS A 210 1 13 HELIX 12 12 GLU A 211 ALA A 217 1 7 HELIX 13 13 HIS A 218 GLN A 222 5 5 HELIX 14 14 PRO A 226 ARG A 230 5 5 HELIX 15 15 SER B 14 SER B 28 1 15 HELIX 16 16 GLN B 80 LEU B 92 1 13 HELIX 17 17 ASN B 105 VAL B 123 1 19 HELIX 18 18 GLN B 124 THR B 127 5 4 HELIX 19 19 ASN B 128 LEU B 138 1 11 HELIX 20 20 ASP B 141 ALA B 165 1 25 HELIX 21 21 THR B 175 VAL B 191 1 17 HELIX 22 22 ASP B 194 ARG B 197 5 4 HELIX 23 23 PHE B 198 LYS B 210 1 13 HELIX 24 24 GLU B 211 ALA B 217 1 7 HELIX 25 25 HIS B 218 GLN B 222 5 5 HELIX 26 26 PRO B 226 ARG B 230 5 5 SHEET 1 A 4 THR A 32 PRO A 35 0 SHEET 2 A 4 ASN A 5 GLY A 10 1 N LEU A 8 O THR A 32 SHEET 3 A 4 LEU A 59 SER A 63 -1 O SER A 63 N ASN A 5 SHEET 4 A 4 SER A 75 ILE A 78 -1 O PHE A 76 N VAL A 62 SHEET 1 B 4 THR B 32 PRO B 35 0 SHEET 2 B 4 PHE B 6 GLY B 10 1 N PHE B 6 O THR B 32 SHEET 3 B 4 LEU B 59 SER B 63 -1 O LEU B 59 N TYR B 9 SHEET 4 B 4 SER B 75 ILE B 78 -1 O PHE B 76 N VAL B 62 CISPEP 1 VAL A 57 PRO A 58 0 6.12 CISPEP 2 VAL B 57 PRO B 58 0 0.97 SITE 1 AC1 22 SER A 14 SER A 15 CYS A 16 ARG A 19 SITE 2 AC1 22 GLN A 43 THR A 56 VAL A 57 PRO A 58 SITE 3 AC1 22 GLN A 80 SER A 81 GLN A 124 ASN A 128 SITE 4 AC1 22 LEU A 129 LYS A 130 SO4 A 233 HOH A 252 SITE 5 AC1 22 HOH A 517 HOH A 619 CYS B 121 ASP B 122 SITE 6 AC1 22 HOH B 499 HOH B 554 SITE 1 AC2 10 ARG A 13 SER A 14 SER A 15 GLN A 124 SITE 2 AC2 10 ASN A 128 GSH A 232 HOH A 333 HOH A 334 SITE 3 AC2 10 HOH A 524 HOH A 661 SITE 1 AC3 9 SER B 14 SER B 15 GLN B 124 ASN B 128 SITE 2 AC3 9 HOH B 406 HOH B 421 HOH B 574 HOH B 649 SITE 3 AC3 9 HOH B 650 SITE 1 AC4 6 ASN B 64 ILE B 65 THR B 94 HOH B 480 SITE 2 AC4 6 HOH B 485 HOH B 621 CRYST1 49.610 110.930 168.490 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005935 0.00000