HEADER LIGASE 26-MAY-10 3N6X TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLUTATHIONYLSPERMIDINE SYNTHASE TITLE 2 (MFLA_0391) FROM METHYLOBACILLUS FLAGELLATUS KT AT 2.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUTATHIONYLSPERMIDINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 STRAIN: KT / ATCC 51484 / DSM 6875; SOURCE 5 GENE: MFLA_0391; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDENATS KEYWDS DOMAIN OF UNKNOWN FUNCTION (DUF404), STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 3N6X 1 REMARK SEQADV LINK REVDAT 2 25-OCT-17 3N6X 1 REMARK REVDAT 1 09-JUN-10 3N6X 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLUTATHIONYLSPERMIDINE JRNL TITL 2 SYNTHASE (MFLA_0391) FROM METHYLOBACILLUS FLAGELLATUS KT AT JRNL TITL 3 2.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.4300 - 2.3500 0.00 2593 137 0.2030 0.2440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23900 REMARK 3 B22 (A**2) : -0.23900 REMARK 3 B33 (A**2) : 0.47900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3739 REMARK 3 ANGLE : 0.730 5069 REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL 539 REMARK 3 DIHEDRAL : NULL 1279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. GLYCEROL (GOL), SULFLATE (SO4) AND CHLORIDE REMARK 3 (CL) MODELED ARE PRESENT PURIFICATION/CRYSTALLIZATION/CRYO REMARK 3 CONDITIONS. 3. THE FOLLOWING REGIONS HAVE POOR DENSITY, THE REMARK 3 CORRESPONDING MODEL IS NOT RELIABLE: 13-19,33-37,227-231. THE REMARK 3 SOLVENT REGION IS NOISY. REMARK 4 REMARK 4 3N6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97927,0.97911 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31751 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.944 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.83300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8000M AMMONIUM SULFATE, 0.1M MES PH REMARK 280 6.0, ADDITIVE: 0.003 M ADENOSINE 5'-TRIPHOSPHATE MAGNESIUM SALT, REMARK 280 NANODROP', VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.74350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.67200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.67200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.87175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.67200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.67200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.61525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.67200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.67200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.87175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.67200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.67200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 116.61525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.74350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 97.34400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 97.34400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.74350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 57 REMARK 465 VAL A 58 REMARK 465 TYR A 59 REMARK 465 GLY A 60 REMARK 465 GLU A 61 REMARK 465 ASP A 62 REMARK 465 ALA A 63 REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 GLU A 66 REMARK 465 ARG A 67 REMARK 465 GLY A 371 REMARK 465 SER A 372 REMARK 465 GLY A 373 REMARK 465 GLY A 374 REMARK 465 TYR A 375 REMARK 465 ASP A 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 OG1 CG2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 ARG A 85 CZ NH1 NH2 REMARK 470 ASN A 154 CG OD1 ND2 REMARK 470 GLN A 370 CG CD OE1 NE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ARG A 394 CZ NH1 NH2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 SER A 460 OG REMARK 470 GLN A 461 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 -161.07 -71.39 REMARK 500 ASP A 16 -132.70 -100.69 REMARK 500 HIS A 35 -169.53 59.98 REMARK 500 GLN A 36 25.47 -79.91 REMARK 500 HIS A 106 -111.85 -129.93 REMARK 500 ARG A 164 -75.61 -87.72 REMARK 500 TYR A 227 42.97 -82.17 REMARK 500 PHE A 286 -135.38 -119.60 REMARK 500 ASN A 398 73.09 -160.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 490 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 491 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 493 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 494 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 495 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 496 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 497 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374190 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEAENLYFQG. TH REMARK 999 E TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) REMARK 999 FOLLOWED THE TARGET SEQUENCE. DBREF 3N6X A 1 473 UNP Q1H4C5 Q1H4C5_METFK 1 473 SEQADV 3N6X GLY A 0 UNP Q1H4C5 EXPRESSION TAG SEQRES 1 A 474 GLY MSE ASP THR ALA LYS THR LYS PRO PHE ASP GLU MSE SEQRES 2 A 474 PHE LEU GLN ASP GLU VAL ILE ARG PRO ILE TYR ALA GLU SEQRES 3 A 474 TYR ALA ALA TRP LEU GLN ASP VAL PRO HIS GLN GLN LEU SEQRES 4 A 474 GLU SER LYS ARG GLN GLU ALA GLU LEU LEU PHE ARG ARG SEQRES 5 A 474 VAL GLY ILE THR PHE ASN VAL TYR GLY GLU ASP ALA GLY SEQRES 6 A 474 ALA GLU ARG LEU ILE PRO PHE ASP VAL VAL PRO ARG ILE SEQRES 7 A 474 LEU SER ALA SER GLU TRP ALA ARG LEU SER ASP GLY ALA SEQRES 8 A 474 ILE GLN ARG VAL LYS ALA LEU ASN MSE PHE LEU HIS ASP SEQRES 9 A 474 VAL TYR HIS ASP GLN GLU ILE ILE LYS ALA GLY ILE VAL SEQRES 10 A 474 PRO SER SER ILE LEU ALA ASN ALA GLN TYR ARG PRO GLU SEQRES 11 A 474 MSE PHE GLY VAL ASP VAL PRO GLY GLY VAL TYR ALA HIS SEQRES 12 A 474 ILE ALA GLY VAL ASP LEU VAL ARG THR GLY GLU ASN ASP SEQRES 13 A 474 PHE TYR VAL LEU GLU ASP ASN LEU ARG THR PRO SER GLY SEQRES 14 A 474 VAL SER TYR MSE LEU GLU ASN ARG LYS MSE MSE MSE ARG SEQRES 15 A 474 LEU PHE PRO GLU LEU PHE ARG ARG TYR PRO VAL ALA PRO SEQRES 16 A 474 VAL GLU HIS TYR PRO GLN VAL LEU LEU ASN ASN LEU ARG SEQRES 17 A 474 ALA VAL ALA GLN ALA GLY VAL HIS GLU PRO THR VAL VAL SEQRES 18 A 474 LEU LEU THR PRO GLY ALA TYR ASN SER ALA TYR PHE GLU SEQRES 19 A 474 HIS ALA PHE ILE ALA GLN GLN MSE GLY ILE GLU LEU VAL SEQRES 20 A 474 GLU GLY GLN ASP LEU PHE VAL ARG ASN ASN ALA VAL TYR SEQRES 21 A 474 MSE ARG THR THR GLU GLY PRO LYS ARG VAL ASP VAL ILE SEQRES 22 A 474 TYR ARG ARG ILE ASP ASP ASP PHE ILE ASP PRO LEU SER SEQRES 23 A 474 PHE ARG PRO ASP SER MSE LEU GLY VAL PRO GLY LEU LEU SEQRES 24 A 474 SER VAL TYR ARG ASN GLY GLY VAL THR LEU ALA ASN ALA SEQRES 25 A 474 VAL GLY THR GLY VAL ALA ASP ASP LYS ASP THR TYR ILE SEQRES 26 A 474 TYR VAL PRO GLU MSE ILE ARG PHE TYR LEU GLY GLU GLU SEQRES 27 A 474 PRO ILE LEU SER ASN VAL PRO THR TYR GLN LEU SER LYS SEQRES 28 A 474 ALA ASP ASP LEU LYS TYR VAL LEU ASP ASN LEU ALA GLU SEQRES 29 A 474 LEU VAL VAL LYS GLU VAL GLN GLY SER GLY GLY TYR GLY SEQRES 30 A 474 MSE LEU VAL GLY PRO ALA ALA SER LYS GLN GLU LEU GLU SEQRES 31 A 474 ASP PHE ARG GLN ARG ILE LEU ALA ASN PRO ALA ASN TYR SEQRES 32 A 474 ILE ALA GLN PRO THR LEU ALA LEU SER THR CYS PRO THR SEQRES 33 A 474 LEU VAL GLU THR GLY ILE ALA PRO ARG HIS VAL ASP LEU SEQRES 34 A 474 ARG PRO PHE VAL LEU SER GLY LYS THR VAL SER LEU VAL SEQRES 35 A 474 PRO GLY ALA LEU CYS ARG VAL ALA LEU ARG GLU GLY SER SEQRES 36 A 474 LEU VAL VAL ASN SER SER GLN GLY GLY GLY THR LYS ASP SEQRES 37 A 474 THR TRP ILE LEU LYS ASP MODRES 3N6X MSE A 12 MET SELENOMETHIONINE MODRES 3N6X MSE A 99 MET SELENOMETHIONINE MODRES 3N6X MSE A 130 MET SELENOMETHIONINE MODRES 3N6X MSE A 172 MET SELENOMETHIONINE MODRES 3N6X MSE A 178 MET SELENOMETHIONINE MODRES 3N6X MSE A 179 MET SELENOMETHIONINE MODRES 3N6X MSE A 180 MET SELENOMETHIONINE MODRES 3N6X MSE A 241 MET SELENOMETHIONINE MODRES 3N6X MSE A 260 MET SELENOMETHIONINE MODRES 3N6X MSE A 291 MET SELENOMETHIONINE MODRES 3N6X MSE A 329 MET SELENOMETHIONINE MODRES 3N6X MSE A 377 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 99 8 HET MSE A 130 8 HET MSE A 172 8 HET MSE A 178 8 HET MSE A 179 8 HET MSE A 180 8 HET MSE A 241 8 HET MSE A 260 8 HET MSE A 291 8 HET MSE A 329 8 HET MSE A 377 8 HET SO4 A 474 5 HET SO4 A 475 5 HET SO4 A 476 5 HET CL A 477 1 HET CL A 478 1 HET CL A 479 1 HET GOL A 480 6 HET GOL A 481 6 HET GOL A 482 6 HET GOL A 483 6 HET GOL A 484 6 HET GOL A 485 6 HET GOL A 486 6 HET GOL A 487 6 HET GOL A 488 6 HET GOL A 489 6 HET GOL A 490 6 HET GOL A 491 6 HET GOL A 492 6 HET GOL A 493 6 HET GOL A 494 6 HET GOL A 495 6 HET GOL A 496 6 HET GOL A 497 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 CL 3(CL 1-) FORMUL 8 GOL 18(C3 H8 O3) FORMUL 26 HOH *225(H2 O) HELIX 1 1 ARG A 20 ILE A 22 5 3 HELIX 2 2 TYR A 23 VAL A 33 1 11 HELIX 3 3 SER A 40 GLY A 53 1 14 HELIX 4 4 SER A 79 TYR A 105 1 27 HELIX 5 5 GLN A 108 ALA A 113 1 6 HELIX 6 6 PRO A 117 ASN A 123 5 7 HELIX 7 7 ARG A 127 PHE A 131 5 5 HELIX 8 8 VAL A 135 VAL A 139 5 5 HELIX 9 9 GLY A 168 PHE A 183 1 16 HELIX 10 10 PHE A 183 TYR A 190 1 8 HELIX 11 11 HIS A 197 VAL A 209 1 13 HELIX 12 12 ALA A 230 GLY A 242 1 13 HELIX 13 13 GLU A 247 GLN A 249 5 3 HELIX 14 14 ASP A 277 ILE A 281 5 5 HELIX 15 15 GLY A 296 ASN A 303 1 8 HELIX 16 16 THR A 314 ASP A 319 1 6 HELIX 17 17 THR A 322 ILE A 324 5 3 HELIX 18 18 TYR A 325 GLY A 335 1 11 HELIX 19 19 LYS A 350 ASN A 360 1 11 HELIX 20 20 PRO A 381 ALA A 383 5 3 HELIX 21 21 SER A 384 ASN A 398 1 15 SHEET 1 A 2 ARG A 76 LEU A 78 0 SHEET 2 A 2 THR A 468 ILE A 470 1 O TRP A 469 N LEU A 78 SHEET 1 B 5 SER A 341 ASN A 342 0 SHEET 2 B 5 PHE A 156 ASN A 162 1 N VAL A 158 O SER A 341 SHEET 3 B 5 ILE A 143 ARG A 150 -1 N ASP A 147 O LEU A 159 SHEET 4 B 5 PHE A 431 SER A 434 -1 O VAL A 432 N ALA A 144 SHEET 5 B 5 VAL A 438 LEU A 440 -1 O SER A 439 N LEU A 433 SHEET 1 C 4 GLU A 244 VAL A 246 0 SHEET 2 C 4 VAL A 219 LEU A 222 1 N LEU A 221 O VAL A 246 SHEET 3 C 4 VAL A 271 ARG A 274 1 O TYR A 273 N VAL A 220 SHEET 4 C 4 THR A 307 ALA A 309 1 O THR A 307 N ILE A 272 SHEET 1 D 3 LEU A 251 VAL A 253 0 SHEET 2 D 3 VAL A 258 MSE A 260 -1 O TYR A 259 N PHE A 252 SHEET 3 D 3 LYS A 267 VAL A 269 -1 O LYS A 267 N MSE A 260 SHEET 1 E 4 TYR A 346 GLN A 347 0 SHEET 2 E 4 TYR A 402 PRO A 406 -1 O ALA A 404 N TYR A 346 SHEET 3 E 4 LEU A 364 GLU A 368 -1 N VAL A 365 O GLN A 405 SHEET 4 E 4 MSE A 377 VAL A 379 -1 O LEU A 378 N VAL A 366 SHEET 1 F 4 THR A 412 VAL A 417 0 SHEET 2 F 4 GLY A 420 ARG A 429 -1 O GLY A 420 N VAL A 417 SHEET 3 F 4 LEU A 445 ALA A 449 -1 O ALA A 449 N HIS A 425 SHEET 4 F 4 GLY A 463 LYS A 466 -1 O GLY A 464 N VAL A 448 LINK C GLU A 11 N MSE A 12 1555 1555 1.36 LINK C MSE A 12 N PHE A 13 1555 1555 1.36 LINK C ASN A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N PHE A 100 1555 1555 1.35 LINK C GLU A 129 N MSE A 130 1555 1555 1.34 LINK C MSE A 130 N PHE A 131 1555 1555 1.34 LINK C TYR A 171 N MSE A 172 1555 1555 1.34 LINK C MSE A 172 N LEU A 173 1555 1555 1.34 LINK C LYS A 177 N MSE A 178 1555 1555 1.35 LINK C MSE A 178 N MSE A 179 1555 1555 1.36 LINK C MSE A 179 N MSE A 180 1555 1555 1.36 LINK C MSE A 180 N ARG A 181 1555 1555 1.35 LINK C GLN A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N GLY A 242 1555 1555 1.33 LINK C TYR A 259 N MSE A 260 1555 1555 1.33 LINK C MSE A 260 N ARG A 261 1555 1555 1.35 LINK C SER A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N LEU A 292 1555 1555 1.35 LINK C GLU A 328 N MSE A 329 1555 1555 1.37 LINK C MSE A 329 N ILE A 330 1555 1555 1.35 LINK C GLY A 376 N MSE A 377 1555 1555 1.35 LINK C MSE A 377 N LEU A 378 1555 1555 1.34 CISPEP 1 ALA A 309 ASN A 310 0 0.58 SITE 1 AC1 8 ASN A 162 LEU A 163 ARG A 164 THR A 165 SITE 2 AC1 8 PRO A 166 ASP A 318 GOL A 491 HOH A 617 SITE 1 AC2 4 SER A 299 ARG A 302 ASN A 303 HOH A 610 SITE 1 AC3 3 ARG A 302 ASN A 303 GOL A 487 SITE 1 AC4 3 THR A 165 HIS A 234 ARG A 275 SITE 1 AC5 1 ARG A 331 SITE 1 AC6 1 VAL A 438 SITE 1 AC7 4 ALA A 226 ASN A 228 TYR A 231 PHE A 232 SITE 1 AC8 5 GLY A 53 ASN A 228 ILE A 276 ASP A 277 SITE 2 AC8 5 HOH A 507 SITE 1 AC9 6 GLU A 264 ILE A 324 ASN A 342 VAL A 343 SITE 2 AC9 6 HOH A 544 HOH A 703 SITE 1 BC1 6 ARG A 176 MSE A 180 VAL A 192 PRO A 194 SITE 2 BC1 6 HOH A 525 HOH A 557 SITE 1 BC2 5 MSE A 99 GLY A 435 VAL A 438 HOH A 509 SITE 2 BC2 5 HOH A 536 SITE 1 BC3 5 PRO A 21 ILE A 22 ALA A 24 GLU A 25 SITE 2 BC3 5 TYR A 190 SITE 1 BC4 7 ARG A 85 ASN A 154 ASP A 155 PHE A 156 SITE 2 BC4 7 ILE A 339 SER A 341 HOH A 707 SITE 1 BC5 6 GLY A 132 VAL A 133 ASP A 134 ARG A 302 SITE 2 BC5 6 SO4 A 476 HOH A 534 SITE 1 BC6 7 TRP A 83 SER A 87 SER A 439 LEU A 440 SITE 2 BC6 7 PRO A 442 HOH A 643 HOH A 659 SITE 1 BC7 4 THR A 263 TYR A 346 ASP A 353 HOH A 709 SITE 1 BC8 4 ILE A 69 TYR A 171 ARG A 447 HOH A 602 SITE 1 BC9 6 GLU A 160 ASP A 161 ARG A 164 ASP A 318 SITE 2 BC9 6 SO4 A 474 HOH A 586 SITE 1 CC1 4 ASN A 255 ARG A 331 GLU A 336 GLU A 337 SITE 1 CC2 4 ASP A 103 HIS A 106 ASP A 107 HOH A 547 SITE 1 CC3 8 HIS A 197 VAL A 201 LEU A 396 SER A 439 SITE 2 CC3 8 LEU A 440 PRO A 442 HOH A 640 HOH A 700 SITE 1 CC4 5 ARG A 207 VAL A 214 HIS A 215 GLU A 389 SITE 2 CC4 5 HOH A 666 SITE 1 CC5 4 GLN A 125 ARG A 164 ASP A 277 HOH A 648 SITE 1 CC6 5 ALA A 124 GLN A 125 ARG A 127 ARG A 188 SITE 2 CC6 5 ASP A 279 CRYST1 97.344 97.344 155.487 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006431 0.00000