HEADER HYDROLASE 26-MAY-10 3N6Z TITLE CRYSTAL STRUCTURE OF A PUTATIVE IMMUNOGLOBULIN A1 PROTEASE TITLE 2 (BACOVA_03286) FROM BACTEROIDES OVATUS AT 1.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE IMMUNOGLOBULIN A1 PROTEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_03286; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3N6Z 1 REMARK SEQADV REVDAT 3 17-JUL-19 3N6Z 1 REMARK LINK REVDAT 2 08-NOV-17 3N6Z 1 REMARK REVDAT 1 21-JUL-10 3N6Z 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE IMMUNOGLOBULIN A1 PROTEASE JRNL TITL 2 (BACOVA_03286) FROM BACTEROIDES OVATUS AT 1.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 94632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6564 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 326 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 444 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.039 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.309 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2781 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1838 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3815 ; 1.520 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4545 ; 1.127 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.957 ;25.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;11.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.573 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3297 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1792 ; 2.122 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 776 ; 1.343 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2886 ; 2.925 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 989 ; 3.779 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 892 ; 5.293 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4619 ; 1.835 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 463 ; 7.395 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4541 ; 3.659 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. GLYCEROL (GOL) AND SULFATE (SO4) MODELED ARE REMARK 3 PRESENT IN CRYO/CRYSTALLIZATION CONDITIONS. 4. RAMACHANDRAN REMARK 3 OUTLIER SER139 IS SUPPORTED BY DENSITY. THE N-TERMINAL REGION REMARK 3 (29-35) HAS WEAK DENSITY. THE MODEL HERE IS LIKELY TO HAVE REMARK 3 PARTIAL OCCUPANCY. 5. RESIDUES 20-28 AND 36-49 WERE NOT MODELED REMARK 3 DUE TO THE LACK OF ELETRON DENSITY IN THESE REGIONS. REMARK 4 REMARK 4 3N6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97935,0.97899 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.699 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.400000000M (NH4)2SO4, 0.1M BICINE PH REMARK 280 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.05050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.83950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.83950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.07575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.83950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.83950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.02525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.83950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.83950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 99.07575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.83950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.83950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.02525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.05050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 75.67900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 75.67900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.05050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ILE A 20 REMARK 465 SER A 21 REMARK 465 CYS A 22 REMARK 465 SER A 23 REMARK 465 ASP A 24 REMARK 465 PRO A 25 REMARK 465 ASN A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 PHE A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 ASP A 42 REMARK 465 ASP A 43 REMARK 465 GLY A 44 REMARK 465 ASN A 45 REMARK 465 GLY A 46 REMARK 465 ASP A 47 REMARK 465 GLY A 48 REMARK 465 ASP A 49 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 131 CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 133 34.20 -143.11 REMARK 500 SER A 139 176.07 163.87 REMARK 500 ALA A 209 -149.98 -91.47 REMARK 500 LYS A 265 98.60 -162.69 REMARK 500 ASN A 363 94.27 -166.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416733 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 20-381) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3N6Z A 20 381 UNP A7LZL0 A7LZL0_BACOV 20 381 SEQADV 3N6Z GLY A 0 UNP A7LZL0 EXPRESSION TAG SEQRES 1 A 363 GLY ILE SER CYS SER ASP PRO ASN PRO LEU ASP SER TYR SEQRES 2 A 363 THR ARG VAL PRO PHE GLU LYS THR GLU THR ASP ASP GLY SEQRES 3 A 363 ASN GLY ASP GLY ASP GLY ASP GLY ALA GLY GLY LEU PHE SEQRES 4 A 363 GLU LYS GLY ASN GLY THR ASP SER LYS PRO TYR MSE ILE SEQRES 5 A 363 MSE ASN ALA THR GLN ILE ARG ASN MSE ARG SER VAL LEU SEQRES 6 A 363 LYS SER GLY MSE LYS VAL TYR PHE GLN LEU GLY ALA ASP SEQRES 7 A 363 ILE ASP MSE ALA GLY ILE ASP ASP TRP GLN SER LEU ASN SEQRES 8 A 363 GLY SER GLY ASP PHE PRO TYR GLU ILE ASP PHE ASP GLY SEQRES 9 A 363 ASP SER HIS VAL ILE LYS ASN PHE LYS CYS SER ALA GLY SEQRES 10 A 363 ASP TYR PRO SER PHE PHE GLY VAL LEU CYS GLY ASP CYS SEQRES 11 A 363 ARG ASN VAL GLY PHE VAL ASN ALA SER VAL SER SER ALA SEQRES 12 A 363 ARG GLN GLY ILE GLY ILE ILE THR GLY TYR LEU GLY LEU SEQRES 13 A 363 LYS ASP LYS GLY ASN GLY ASN LYS THR GLY ARG ILE VAL SEQRES 14 A 363 ASN CYS TYR THR THR GLY GLU VAL ILE GLY SER GLY ALA SEQRES 15 A 363 ALA GLY GLY ILE ALA GLY VAL LEU ALA ASN SER TYR ASP SEQRES 16 A 363 GLY GLN GLU SER TYR ILE LYS ASN CYS TYR SER ASN ALA SEQRES 17 A 363 THR VAL SER ASP ARG ALA ALA SER GLY GLY LYS ALA GLY SEQRES 18 A 363 GLY ILE ALA GLY ARG LYS VAL GLY VAL GLY GLY PHE ILE SEQRES 19 A 363 GLU ASN CYS TYR ALA TYR GLY ALA VAL SER ALA THR LYS SEQRES 20 A 363 GLY GLY VAL GLY GLY ILE LEU GLY GLN ILE ASP LYS SER SEQRES 21 A 363 CYS ASP ILE ALA ILE LYS ASN SER ALA ALA TRP SER ASN SEQRES 22 A 363 LEU THR GLY VAL ASP ALA SER SER THR VAL GLY ARG ILE SEQRES 23 A 363 VAL GLY VAL SER ALA SER LEU GLY SER TYR GLU ASN CYS SEQRES 24 A 363 TYR ALA CYS GLU SER ILE VAL LEU LYS VAL ASN GLU LYS SEQRES 25 A 363 THR ILE THR ALA SER ASP GLU SER SER ALA THR GLY THR SEQRES 26 A 363 THR PHE HIS GLY VAL ALA LYS SER ALA GLU GLU LEU GLY SEQRES 27 A 363 ASN ILE ILE VAL ALA TRP ASN PRO ASN LEU TRP LYS LYS SEQRES 28 A 363 GLY THR ASN GLY TYR PRO ILE PHE GLN TRP SER GLU MODRES 3N6Z MSE A 69 MET SELENOMETHIONINE MODRES 3N6Z MSE A 71 MET SELENOMETHIONINE MODRES 3N6Z MSE A 79 MET SELENOMETHIONINE MODRES 3N6Z MSE A 87 MET SELENOMETHIONINE MODRES 3N6Z MSE A 99 MET SELENOMETHIONINE HET MSE A 69 13 HET MSE A 71 8 HET MSE A 79 8 HET MSE A 87 16 HET MSE A 99 8 HET SO4 A 1 5 HET SO4 A 2 5 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *444(H2 O) HELIX 1 1 GLY A 50 LEU A 56 1 7 HELIX 2 2 ASN A 72 ARG A 77 1 6 HELIX 3 3 ASN A 78 LEU A 83 1 6 HELIX 4 4 ASN A 179 LYS A 182 5 4 HELIX 5 5 SER A 308 SER A 310 5 3 HELIX 6 6 SER A 351 ASN A 363 1 13 LINK C TYR A 68 N MSE A 69 1555 1555 1.34 LINK C MSE A 69 N ILE A 70 1555 1555 1.34 LINK C ILE A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N ASN A 72 1555 1555 1.32 LINK C ASN A 78 N MSE A 79 1555 1555 1.35 LINK C MSE A 79 N ARG A 80 1555 1555 1.33 LINK C AGLY A 86 N AMSE A 87 1555 1555 1.33 LINK C BGLY A 86 N BMSE A 87 1555 1555 1.31 LINK C AMSE A 87 N LYS A 88 1555 1555 1.34 LINK C BMSE A 87 N LYS A 88 1555 1555 1.33 LINK C ASP A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N ALA A 100 1555 1555 1.33 CISPEP 1 VAL A 34 PRO A 35 0 4.46 SITE 1 AC1 9 THR A 32 ARG A 33 ARG A 77 ARG A 162 SITE 2 AC1 9 HOH A 382 HOH A 410 HOH A 523 HOH A 539 SITE 3 AC1 9 HOH A 795 SITE 1 AC2 3 ARG A 244 HOH A 631 HOH A 660 SITE 1 AC3 6 ASP A 280 ILE A 281 SER A 313 HOH A 467 SITE 2 AC3 6 HOH A 546 HOH A 578 SITE 1 AC4 3 TYR A 137 TYR A 171 HOH A 594 SITE 1 AC5 4 SER A 198 ALA A 233 SER A 234 HOH A 629 CRYST1 75.679 75.679 132.101 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013214 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007570 0.00000