HEADER HYDROLASE/DNA 26-MAY-10 3N78 TITLE SGRAI BOUND TO SECONDARY SITE DNA AND MG(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SGRAIR RESTRICTION ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.21.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)- COMPND 14 3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRISEUS; SOURCE 3 ORGANISM_TAXID: 1911; SOURCE 4 GENE: SGRA1R, SGRAIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS RESTRICTION ENDONUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.HORTON,E.J.LITTLE,P.W.DUNTEN REVDAT 3 21-FEB-24 3N78 1 REMARK SEQADV LINK REVDAT 2 09-FEB-11 3N78 1 JRNL REVDAT 1 24-NOV-10 3N78 0 JRNL AUTH E.J.LITTLE,P.W.DUNTEN,J.BITINAITE,N.C.HORTON JRNL TITL NEW CLUES IN THE ALLOSTERIC ACTIVATION OF DNA CLEAVAGE BY JRNL TITL 2 SGRAI: STRUCTURES OF SGRAI BOUND TO CLEAVED PRIMARY-SITE DNA JRNL TITL 3 AND UNCLEAVED SECONDARY-SITE DNA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 67 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 21206063 JRNL DOI 10.1107/S0907444910047785 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 19834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.3560 - 5.6409 0.97 2840 140 0.1682 0.2246 REMARK 3 2 5.6409 - 4.4782 0.98 2729 150 0.1552 0.2643 REMARK 3 3 4.4782 - 3.9124 0.99 2721 145 0.1601 0.2249 REMARK 3 4 3.9124 - 3.5548 0.98 2712 129 0.1834 0.2706 REMARK 3 5 3.5548 - 3.3001 0.97 2648 142 0.2013 0.2940 REMARK 3 6 3.3001 - 3.1055 0.96 2641 125 0.2263 0.3608 REMARK 3 7 3.1055 - 2.9500 0.96 2583 129 0.2369 0.3623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 30.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.40000 REMARK 3 B22 (A**2) : -8.08060 REMARK 3 B33 (A**2) : 15.48060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6192 REMARK 3 ANGLE : 1.347 8567 REMARK 3 CHIRALITY : 0.076 947 REMARK 3 PLANARITY : 0.005 1002 REMARK 3 DIHEDRAL : 21.783 2319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 84.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : 0.39200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 TO 21% PEG 4K, 0.1 M HEPES BUFFER, REMARK 280 0.15-0.20 M NACL, 0.05 M MGCL2, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.39700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.50100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.39700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.50100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE ENZYME IS DIMERIC, AND IS BOUND TO REMARK 300 ONE DUPLEX OF DNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 301 REMARK 465 GLY A 302 REMARK 465 LYS B 177 REMARK 465 ASP B 178 REMARK 465 ARG B 303 REMARK 465 SER B 304 REMARK 465 ALA B 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 131 CD NE CZ NH1 NH2 REMARK 470 ARG A 303 NE CZ NH1 NH2 REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 341 O HOH C 66 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 83 CG PHE A 83 CD2 -0.204 REMARK 500 PHE A 83 CG PHE A 83 CD1 -0.156 REMARK 500 PHE A 83 CD1 PHE A 83 CE1 -0.263 REMARK 500 PHE A 83 CE1 PHE A 83 CZ -0.292 REMARK 500 PHE A 83 CZ PHE A 83 CE2 -0.254 REMARK 500 PHE A 83 CE2 PHE A 83 CD2 -0.260 REMARK 500 PHE A 83 C PHE A 83 O -0.157 REMARK 500 ASP A 85 C ASP A 85 O -0.137 REMARK 500 PRO B 282 CB PRO B 282 CG -0.350 REMARK 500 PRO B 282 CG PRO B 282 CD -0.328 REMARK 500 PRO B 282 C PRO B 282 O -0.162 REMARK 500 GLU B 283 CB GLU B 283 CG -0.181 REMARK 500 GLU B 283 CG GLU B 283 CD -0.259 REMARK 500 GLU B 283 CD GLU B 283 OE1 -0.152 REMARK 500 GLU B 283 CD GLU B 283 OE2 -0.185 REMARK 500 GLU B 283 CA GLU B 283 C -0.162 REMARK 500 GLU B 283 C GLU B 283 O -0.188 REMARK 500 DC C 8 O3' DC C 8 C3' -0.059 REMARK 500 DG C 10 O3' DG C 10 C3' -0.036 REMARK 500 DC D 8 O3' DC D 8 C3' -0.059 REMARK 500 DG D 10 O3' DG D 10 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 PRO A 162 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO B 282 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT C 4 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC C 5 C3' - C2' - C1' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 5 N1 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = -6.6 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT C 17 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA D 2 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 4 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC D 5 C3' - C2' - C1' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC D 5 N1 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = -6.6 DEGREES REMARK 500 DT D 12 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT D 12 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 17 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 56.45 -118.08 REMARK 500 ARG A 29 109.00 -46.19 REMARK 500 ALA A 55 -139.55 -121.62 REMARK 500 GLU A 73 -59.25 -29.94 REMARK 500 ARG A 84 -120.82 67.53 REMARK 500 ALA A 115 -80.20 -57.72 REMARK 500 SER A 119 -85.70 -46.48 REMARK 500 VAL A 122 -78.13 -103.21 REMARK 500 ARG A 127 144.02 -34.94 REMARK 500 SER A 140 122.22 179.74 REMARK 500 ARG A 142 -3.08 -55.89 REMARK 500 ASN A 149 103.76 -53.00 REMARK 500 GLU A 170 -79.50 -59.37 REMARK 500 PHE A 171 -64.47 -25.43 REMARK 500 LYS A 177 27.17 -70.56 REMARK 500 ASP A 178 18.90 -159.47 REMARK 500 SER A 185 -116.78 -105.92 REMARK 500 THR A 186 148.11 -171.37 REMARK 500 GLU A 197 5.31 -63.66 REMARK 500 GLU A 202 -70.70 -62.87 REMARK 500 MET A 203 -35.71 -29.35 REMARK 500 ALA A 281 88.37 -175.93 REMARK 500 MET A 334 41.24 -76.19 REMARK 500 GLU A 335 -63.36 -95.64 REMARK 500 ILE B 7 -78.60 -54.04 REMARK 500 GLU B 8 -54.19 -22.33 REMARK 500 ASN B 12 3.82 -65.09 REMARK 500 ALA B 14 172.57 -50.22 REMARK 500 THR B 16 3.88 -67.14 REMARK 500 ARG B 18 136.94 -36.51 REMARK 500 ILE B 23 17.30 -147.29 REMARK 500 ALA B 26 47.04 -176.99 REMARK 500 ALA B 38 88.82 -64.16 REMARK 500 LEU B 43 -82.34 -62.54 REMARK 500 ALA B 44 -78.47 -11.78 REMARK 500 PHE B 54 -0.48 -144.85 REMARK 500 ALA B 55 -154.47 -104.03 REMARK 500 PHE B 83 49.50 -144.13 REMARK 500 SER B 91 -51.17 -21.15 REMARK 500 ALA B 115 -74.15 -46.11 REMARK 500 GLU B 124 -158.42 -78.59 REMARK 500 ARG B 127 157.54 -49.16 REMARK 500 SER B 128 40.55 -149.14 REMARK 500 SER B 140 148.08 -175.33 REMARK 500 SER B 153 -0.85 99.00 REMARK 500 PRO B 162 -70.42 -45.82 REMARK 500 GLU B 163 -19.96 -43.31 REMARK 500 ILE B 168 33.93 -68.98 REMARK 500 GLU B 169 -52.38 -146.46 REMARK 500 LEU B 175 42.33 -163.16 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 340 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 188 OD2 REMARK 620 2 PHE A 241 O 95.1 REMARK 620 3 HOH A 367 O 72.0 56.1 REMARK 620 4 DC C 8 OP1 87.4 149.4 96.4 REMARK 620 5 DC D 8 OP1 87.4 149.4 96.4 0.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 188 OD2 REMARK 620 2 PHE B 241 O 93.9 REMARK 620 3 DC C 8 OP1 79.7 140.4 REMARK 620 4 DC D 8 OP1 79.7 140.4 0.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N7B RELATED DB: PDB REMARK 900 RELATED ID: 3DW9 RELATED DB: PDB REMARK 900 RELATED ID: 3DVO RELATED DB: PDB REMARK 900 RELATED ID: 3DGP RELATED DB: PDB DBREF 3N78 A 2 339 UNP Q9F6L0 Q9F6L0_STRGR 2 339 DBREF 3N78 B 2 339 UNP Q9F6L0 Q9F6L0_STRGR 2 339 DBREF 3N78 C 2 17 PDB 3N78 3N78 2 17 DBREF 3N78 D 2 17 PDB 3N78 3N78 2 17 SEQADV 3N78 ASP A 63 UNP Q9F6L0 ASN 63 ENGINEERED MUTATION SEQADV 3N78 ASP B 63 UNP Q9F6L0 ASN 63 ENGINEERED MUTATION SEQRES 1 A 338 PRO PHE THR TYR SER ILE GLU ALA THR ARG ASN LEU ALA SEQRES 2 A 338 THR THR GLU ARG CYS ILE GLN ASP ILE ARG ASN ALA PRO SEQRES 3 A 338 VAL ARG ASN ARG SER THR GLN PHE GLN LEU ALA GLN GLN SEQRES 4 A 338 ASN MET LEU ALA TYR THR PHE GLY GLU VAL ILE PRO GLY SEQRES 5 A 338 PHE ALA SER ALA GLY ILE ASN GLY MET ASP TYR ARG ASP SEQRES 6 A 338 VAL ILE GLY ARG PRO VAL GLU ASN ALA VAL THR GLU GLY SEQRES 7 A 338 THR HIS PHE PHE ARG ASP ASP PHE ARG VAL ASP SER ASN SEQRES 8 A 338 ALA LYS ALA LYS VAL ALA GLY ASP ILE PHE GLU ILE VAL SEQRES 9 A 338 SER SER ALA VAL MET TRP ASN CYS ALA ALA ARG TRP ASN SEQRES 10 A 338 SER LEU MET VAL GLY GLU GLY TRP ARG SER GLN PRO ARG SEQRES 11 A 338 TYR SER ARG PRO THR LEU SER PRO SER PRO ARG ARG GLN SEQRES 12 A 338 VAL ALA VAL LEU ASN LEU PRO ARG SER PHE ASP TRP VAL SEQRES 13 A 338 SER LEU LEU VAL PRO GLU SER GLN GLU VAL ILE GLU GLU SEQRES 14 A 338 PHE ARG ALA GLY LEU ARG LYS ASP GLY LEU GLY LEU PRO SEQRES 15 A 338 THR SER THR PRO ASP LEU ALA VAL VAL VAL LEU PRO GLU SEQRES 16 A 338 GLU PHE GLN ASN ASP GLU MET TRP ARG GLU GLU ILE ALA SEQRES 17 A 338 GLY LEU THR ARG PRO ASN GLN ILE LEU LEU SER GLY ALA SEQRES 18 A 338 TYR GLN ARG LEU GLN GLY ARG VAL GLN PRO GLY GLU ILE SEQRES 19 A 338 SER LEU ALA VAL ALA PHE LYS ARG SER LEU ARG SER ASP SEQRES 20 A 338 ARG LEU TYR GLN PRO LEU TYR GLU ALA ASN VAL MET GLN SEQRES 21 A 338 LEU LEU LEU GLU GLY LYS LEU GLY ALA PRO LYS VAL GLU SEQRES 22 A 338 PHE GLU VAL HIS THR LEU ALA PRO GLU GLY THR ASN ALA SEQRES 23 A 338 PHE VAL THR TYR GLU ALA ALA SER LEU TYR GLY LEU ALA SEQRES 24 A 338 GLU GLY ARG SER ALA VAL HIS ARG ALA ILE ARG GLU LEU SEQRES 25 A 338 TYR VAL PRO PRO THR ALA ALA ASP LEU ALA ARG ARG PHE SEQRES 26 A 338 PHE ALA PHE LEU ASN GLU ARG MET GLU LEU VAL ASN GLY SEQRES 1 B 338 PRO PHE THR TYR SER ILE GLU ALA THR ARG ASN LEU ALA SEQRES 2 B 338 THR THR GLU ARG CYS ILE GLN ASP ILE ARG ASN ALA PRO SEQRES 3 B 338 VAL ARG ASN ARG SER THR GLN PHE GLN LEU ALA GLN GLN SEQRES 4 B 338 ASN MET LEU ALA TYR THR PHE GLY GLU VAL ILE PRO GLY SEQRES 5 B 338 PHE ALA SER ALA GLY ILE ASN GLY MET ASP TYR ARG ASP SEQRES 6 B 338 VAL ILE GLY ARG PRO VAL GLU ASN ALA VAL THR GLU GLY SEQRES 7 B 338 THR HIS PHE PHE ARG ASP ASP PHE ARG VAL ASP SER ASN SEQRES 8 B 338 ALA LYS ALA LYS VAL ALA GLY ASP ILE PHE GLU ILE VAL SEQRES 9 B 338 SER SER ALA VAL MET TRP ASN CYS ALA ALA ARG TRP ASN SEQRES 10 B 338 SER LEU MET VAL GLY GLU GLY TRP ARG SER GLN PRO ARG SEQRES 11 B 338 TYR SER ARG PRO THR LEU SER PRO SER PRO ARG ARG GLN SEQRES 12 B 338 VAL ALA VAL LEU ASN LEU PRO ARG SER PHE ASP TRP VAL SEQRES 13 B 338 SER LEU LEU VAL PRO GLU SER GLN GLU VAL ILE GLU GLU SEQRES 14 B 338 PHE ARG ALA GLY LEU ARG LYS ASP GLY LEU GLY LEU PRO SEQRES 15 B 338 THR SER THR PRO ASP LEU ALA VAL VAL VAL LEU PRO GLU SEQRES 16 B 338 GLU PHE GLN ASN ASP GLU MET TRP ARG GLU GLU ILE ALA SEQRES 17 B 338 GLY LEU THR ARG PRO ASN GLN ILE LEU LEU SER GLY ALA SEQRES 18 B 338 TYR GLN ARG LEU GLN GLY ARG VAL GLN PRO GLY GLU ILE SEQRES 19 B 338 SER LEU ALA VAL ALA PHE LYS ARG SER LEU ARG SER ASP SEQRES 20 B 338 ARG LEU TYR GLN PRO LEU TYR GLU ALA ASN VAL MET GLN SEQRES 21 B 338 LEU LEU LEU GLU GLY LYS LEU GLY ALA PRO LYS VAL GLU SEQRES 22 B 338 PHE GLU VAL HIS THR LEU ALA PRO GLU GLY THR ASN ALA SEQRES 23 B 338 PHE VAL THR TYR GLU ALA ALA SER LEU TYR GLY LEU ALA SEQRES 24 B 338 GLU GLY ARG SER ALA VAL HIS ARG ALA ILE ARG GLU LEU SEQRES 25 B 338 TYR VAL PRO PRO THR ALA ALA ASP LEU ALA ARG ARG PHE SEQRES 26 B 338 PHE ALA PHE LEU ASN GLU ARG MET GLU LEU VAL ASN GLY SEQRES 1 C 16 DA DG DT DC DC DA DC DC DG DG DG DG DG SEQRES 2 C 16 DA DC DT SEQRES 1 D 16 DA DG DT DC DC DC DC DC DG DG DT DG DG SEQRES 2 D 16 DA DC DT HET MG A 340 1 HET MG B 1 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *79(H2 O) HELIX 1 1 SER A 6 ASN A 12 1 7 HELIX 2 2 ALA A 38 GLY A 48 1 11 HELIX 3 3 SER A 56 GLY A 61 1 6 HELIX 4 4 ASP A 63 GLY A 69 1 7 HELIX 5 5 GLY A 69 ARG A 84 1 16 HELIX 6 6 ASP A 90 VAL A 122 1 33 HELIX 7 7 SER A 140 ARG A 143 5 4 HELIX 8 8 ASP A 155 LEU A 160 5 6 HELIX 9 9 VAL A 161 LYS A 177 1 17 HELIX 10 10 PRO A 195 GLN A 199 5 5 HELIX 11 11 GLU A 202 GLU A 206 5 5 HELIX 12 12 THR A 212 GLN A 227 1 16 HELIX 13 13 GLN A 231 GLY A 233 5 3 HELIX 14 14 ARG A 246 ARG A 249 5 4 HELIX 15 15 LEU A 250 GLY A 269 1 20 HELIX 16 16 THR A 285 TYR A 291 1 7 HELIX 17 17 LEU A 296 ALA A 300 5 5 HELIX 18 18 THR A 318 MET A 334 1 17 HELIX 19 19 SER B 6 ASN B 12 1 7 HELIX 20 20 GLN B 39 GLY B 48 1 10 HELIX 21 21 SER B 56 GLY B 61 1 6 HELIX 22 22 ASP B 63 GLY B 69 1 7 HELIX 23 23 GLY B 69 PHE B 83 1 15 HELIX 24 24 ASP B 90 GLY B 123 1 34 HELIX 25 25 SER B 140 ARG B 143 5 4 HELIX 26 26 ASP B 155 LEU B 160 5 6 HELIX 27 27 VAL B 161 GLY B 174 1 14 HELIX 28 28 PRO B 195 GLN B 199 5 5 HELIX 29 29 THR B 212 GLN B 227 1 16 HELIX 30 30 GLN B 231 GLY B 233 5 3 HELIX 31 31 ARG B 246 ARG B 249 5 4 HELIX 32 32 LEU B 250 LYS B 267 1 18 HELIX 33 33 THR B 285 TYR B 291 1 7 HELIX 34 34 LEU B 296 GLU B 301 5 6 HELIX 35 35 THR B 318 MET B 334 1 17 SHEET 1 A 2 ILE A 20 ASP A 22 0 SHEET 2 A 2 PHE A 35 LEU A 37 -1 O GLN A 36 N GLN A 21 SHEET 1 B 5 VAL A 145 ASN A 149 0 SHEET 2 B 5 LEU A 189 VAL A 193 -1 O ALA A 190 N LEU A 148 SHEET 3 B 5 ILE A 235 PHE A 241 -1 O LEU A 237 N VAL A 191 SHEET 4 B 5 PHE A 275 HIS A 278 1 O GLU A 276 N ALA A 238 SHEET 5 B 5 LEU A 313 TYR A 314 1 O TYR A 314 N VAL A 277 SHEET 1 C 2 ILE B 20 ASP B 22 0 SHEET 2 C 2 PHE B 35 LEU B 37 -1 O GLN B 36 N GLN B 21 SHEET 1 D 5 VAL B 145 ASN B 149 0 SHEET 2 D 5 LEU B 189 VAL B 193 -1 O VAL B 192 N ALA B 146 SHEET 3 D 5 ILE B 235 PHE B 241 -1 O SER B 236 N VAL B 191 SHEET 4 D 5 PHE B 275 HIS B 278 1 O GLU B 276 N ALA B 238 SHEET 5 D 5 ILE B 310 TYR B 314 1 O TYR B 314 N VAL B 277 LINK OD2 ASP A 188 MG MG A 340 1555 1555 2.10 LINK O PHE A 241 MG MG A 340 1555 1555 2.10 LINK MG MG A 340 O HOH A 367 1555 1555 2.99 LINK MG MG A 340 OP1B DC C 8 1555 1555 2.11 LINK MG MG A 340 OP1A DC D 8 1555 1555 2.11 LINK MG MG B 1 OD2 ASP B 188 1555 1555 2.10 LINK MG MG B 1 O PHE B 241 1555 1555 2.11 LINK MG MG B 1 OP1A DC C 8 1555 1555 2.11 LINK MG MG B 1 OP1B DC D 8 1555 1555 2.11 CISPEP 1 GLN A 129 PRO A 130 0 -12.61 CISPEP 2 GLN B 129 PRO B 130 0 -3.15 SITE 1 AC1 5 ASP A 188 PHE A 241 HOH A 367 DC C 8 SITE 2 AC1 5 DC D 8 SITE 1 AC2 4 ASP B 188 PHE B 241 DC C 8 DC D 8 CRYST1 108.794 133.002 64.623 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015474 0.00000