HEADER IMMUNE SYSTEM 29-MAY-10 3N9G TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE HUMAN NEUTRALIZING ANTI- TITLE 2 WEST NILE VIRUS MAB CR4354 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT OF MAB CR4354, HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT OF MAB CR4354, LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FAB FRAGMENT, HUMAN NEUTRALIZING ANTIBODY, MAB CR4354, IMMUNE SYSTEM, KEYWDS 2 ANTI-WEST NILE VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR B.KAUFMANN,M.G.ROSSMANN REVDAT 6 06-SEP-23 3N9G 1 REMARK REVDAT 5 31-MAR-21 3N9G 1 SOURCE REVDAT 4 25-DEC-19 3N9G 1 SEQRES LINK REVDAT 3 06-DEC-17 3N9G 1 REMARK REVDAT 2 08-NOV-17 3N9G 1 REMARK REVDAT 1 24-NOV-10 3N9G 0 JRNL AUTH B.KAUFMANN,M.R.VOGT,J.GOUDSMIT,H.A.HOLDAWAY,A.A.AKSYUK, JRNL AUTH 2 P.R.CHIPMAN,R.J.KUHN,M.S.DIAMOND,M.G.ROSSMANN JRNL TITL NEUTRALIZATION OF WEST NILE VIRUS BY CROSS-LINKING OF ITS JRNL TITL 2 SURFACE PROTEINS WITH FAB FRAGMENTS OF THE HUMAN MONOCLONAL JRNL TITL 3 ANTIBODY CR4354. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 18950 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20956322 JRNL DOI 10.1073/PNAS.1011036107 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 77999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5540 - 4.3540 0.99 3107 163 0.1680 0.1830 REMARK 3 2 4.3540 - 3.4560 1.00 2985 147 0.1410 0.1500 REMARK 3 3 3.4560 - 3.0200 1.00 2983 149 0.1540 0.1610 REMARK 3 4 3.0200 - 2.7430 1.00 2936 151 0.1630 0.1690 REMARK 3 5 2.7430 - 2.5470 1.00 2920 163 0.1710 0.1910 REMARK 3 6 2.5470 - 2.3970 1.00 2913 159 0.1700 0.1830 REMARK 3 7 2.3970 - 2.2770 1.00 2901 156 0.1640 0.1750 REMARK 3 8 2.2770 - 2.1780 1.00 2890 148 0.1550 0.1740 REMARK 3 9 2.1780 - 2.0940 1.00 2896 166 0.1560 0.1940 REMARK 3 10 2.0940 - 2.0220 1.00 2940 127 0.1560 0.1650 REMARK 3 11 2.0220 - 1.9580 1.00 2888 143 0.1540 0.1790 REMARK 3 12 1.9580 - 1.9020 1.00 2889 146 0.1540 0.1700 REMARK 3 13 1.9020 - 1.8520 1.00 2878 167 0.1550 0.1800 REMARK 3 14 1.8520 - 1.8070 1.00 2907 129 0.1560 0.1910 REMARK 3 15 1.8070 - 1.7660 1.00 2857 146 0.1610 0.2120 REMARK 3 16 1.7660 - 1.7280 1.00 2880 144 0.1580 0.2030 REMARK 3 17 1.7280 - 1.6940 1.00 2851 156 0.1530 0.1800 REMARK 3 18 1.6940 - 1.6620 1.00 2868 162 0.1580 0.1840 REMARK 3 19 1.6620 - 1.6320 1.00 2858 159 0.1650 0.1980 REMARK 3 20 1.6320 - 1.6050 0.98 2839 139 0.1710 0.2030 REMARK 3 21 1.6050 - 1.5790 0.93 2678 141 0.1760 0.2410 REMARK 3 22 1.5790 - 1.5540 0.86 2459 123 0.1910 0.1960 REMARK 3 23 1.5540 - 1.5310 0.80 2305 117 0.2030 0.2030 REMARK 3 24 1.5310 - 1.5100 0.73 2089 116 0.2130 0.2300 REMARK 3 25 1.5100 - 1.4900 0.67 1926 93 0.2330 0.2720 REMARK 3 26 1.4900 - 1.4700 0.61 1700 103 0.2410 0.2540 REMARK 3 27 1.4700 - 1.4520 0.54 1552 98 0.2490 0.2680 REMARK 3 28 1.4520 - 1.4340 0.43 1236 57 0.2670 0.2850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 38.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44100 REMARK 3 B22 (A**2) : 0.77100 REMARK 3 B33 (A**2) : -2.21100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3623 REMARK 3 ANGLE : 1.128 4984 REMARK 3 CHIRALITY : 0.073 566 REMARK 3 PLANARITY : 0.005 644 REMARK 3 DIHEDRAL : 16.384 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN L AND RESID 1:113) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8512 -11.4485 10.1125 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.0915 REMARK 3 T33: 0.0685 T12: 0.0377 REMARK 3 T13: -0.0241 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.7382 L22: 1.2629 REMARK 3 L33: 0.8613 L12: -0.3237 REMARK 3 L13: -0.3644 L23: -0.0966 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0539 S13: 0.0103 REMARK 3 S21: -0.1836 S22: -0.0531 S23: 0.0336 REMARK 3 S31: 0.0273 S32: -0.0796 S33: 0.0310 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN L AND RESID 114:220) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4038 -15.9334 45.3879 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0874 REMARK 3 T33: 0.0675 T12: 0.0298 REMARK 3 T13: -0.0109 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.1203 L22: 1.1929 REMARK 3 L33: 1.0619 L12: -0.1016 REMARK 3 L13: 0.0483 L23: 0.7937 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.1537 S13: -0.0720 REMARK 3 S21: 0.0072 S22: 0.0749 S23: -0.0582 REMARK 3 S31: 0.0868 S32: 0.1052 S33: -0.0967 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 1:123) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9584 1.1468 22.6355 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0336 REMARK 3 T33: 0.0792 T12: 0.0106 REMARK 3 T13: -0.0194 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.8348 L22: 0.3418 REMARK 3 L33: 1.7370 L12: -0.1588 REMARK 3 L13: 0.3178 L23: -0.1849 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0030 S13: 0.0342 REMARK 3 S21: -0.0487 S22: -0.0415 S23: 0.0480 REMARK 3 S31: -0.0612 S32: -0.0635 S33: 0.0254 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 124:195) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9480 -3.6879 42.8727 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0649 REMARK 3 T33: 0.0481 T12: 0.0014 REMARK 3 T13: -0.0031 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.2665 L22: 0.6778 REMARK 3 L33: 0.5725 L12: 0.2119 REMARK 3 L13: 0.1393 L23: 0.1284 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: 0.0015 S13: 0.0331 REMARK 3 S21: -0.0742 S22: -0.0229 S23: -0.0066 REMARK 3 S31: 0.0105 S32: 0.0723 S33: 0.0038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN H AND RESID 196:199) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3276 4.5627 44.9457 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.1544 REMARK 3 T33: 0.1783 T12: -0.0169 REMARK 3 T13: 0.0618 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0929 L22: 0.0849 REMARK 3 L33: 1.7353 L12: 0.0267 REMARK 3 L13: -0.3425 L23: -0.0646 REMARK 3 S TENSOR REMARK 3 S11: 0.1245 S12: 0.1922 S13: 0.1530 REMARK 3 S21: 0.1494 S22: 0.0736 S23: 0.0744 REMARK 3 S31: -0.5940 S32: 0.4971 S33: -0.1622 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN H AND RESID 200:230) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2829 4.8042 47.4865 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0901 REMARK 3 T33: 0.1019 T12: -0.0185 REMARK 3 T13: 0.0014 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4954 L22: 1.3868 REMARK 3 L33: 1.0210 L12: 0.3673 REMARK 3 L13: -0.2308 L23: 0.5958 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.1522 S13: 0.1766 REMARK 3 S21: 0.1728 S22: -0.0181 S23: 0.0700 REMARK 3 S31: -0.0708 S32: 0.1031 S33: -0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : 300X300MM2 ACTIVE AREA, ~2.2SEC REMARK 200 READ-TIME, 4096X4096 OF 0.072MM REMARK 200 PIXELS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: WAM HOMOLOGY MODEL OF VARIABLE DOMAIN + CONSTANT REMARK 200 DOMAIN OF PDB ID 3KYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 20% PEG8000, 10MM REMARK 280 MES BUFFER, PH6.0, 200MM CA(OAC)2, STARTING PROTEIN REMARK 280 CONCENTRATION IN DROP: 8 MG/ML, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.37050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.29850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.53400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.29850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.37050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.53400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER H 197 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 154 69.23 62.65 REMARK 500 SER L 2 153.24 -45.16 REMARK 500 ASN L 28 -92.46 -114.56 REMARK 500 ASN L 52 -51.06 74.33 REMARK 500 ASN L 53 15.89 -145.40 REMARK 500 ASP L 159 -114.84 54.94 REMARK 500 ASN L 178 -3.99 83.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5190 RELATED DB: EMDB REMARK 900 CRYO-ELECTRON MICROSCOPIC DENSITY VOLUME OF WEST NILE VIRUS REMARK 900 COMPLEXED WITH CR4354 FAB FRAGMENTS DBREF 3N9G H 1 230 PDB 3N9G 3N9G 1 230 DBREF 3N9G L 1 220 PDB 3N9G 3N9G 1 220 SEQRES 1 H 230 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL ARG LYS SEQRES 2 H 230 PRO GLY ALA SER THR LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 230 TYR THR PHE THR HIS TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ILE ILE ASN SEQRES 5 H 230 PRO SER GLY GLY SER THR THR TYR ALA GLN LYS LEU GLN SEQRES 6 H 230 GLY ARG VAL THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 H 230 VAL TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 230 ALA VAL TYR TYR CYS ALA ARG ASP TRP GLY SER ASN TYR SEQRES 9 H 230 VAL TRP GLY SER TYR PRO LYS TYR TRP GLY GLN GLY THR SEQRES 10 H 230 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 230 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 230 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 230 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 230 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 230 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 230 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 230 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 230 GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 L 220 GLN SER VAL LEU THR GLN PRO SER SER VAL SER GLY THR SEQRES 2 L 220 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 220 SER ASN ILE GLY SER ASN THR VAL ASN TRP TYR GLN GLN SEQRES 4 L 220 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLY ASN SEQRES 5 L 220 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 220 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 220 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 220 TRP ASP ASP SER LEU ASN GLY PRO VAL PHE GLY GLY GLY SEQRES 9 L 220 THR LYS LEU THR VAL LEU GLY ALA ALA ALA GLY GLN PRO SEQRES 10 L 220 LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SER SEQRES 11 L 220 GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU SEQRES 12 L 220 ILE SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP SEQRES 13 L 220 LYS ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR SEQRES 14 L 220 THR THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SEQRES 15 L 220 SER SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER SEQRES 16 L 220 HIS ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SER SEQRES 17 L 220 THR VAL GLU LYS THR VAL ALA PRO THR GLU CYS SER MODRES 3N9G PCA H 1 GLN PYROGLUTAMIC ACID HET PCA H 1 8 HETNAM PCA PYROGLUTAMIC ACID FORMUL 1 PCA C5 H7 N O3 FORMUL 3 HOH *821(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 GLN H 62 GLN H 65 5 4 HELIX 3 3 ARG H 87 THR H 91 5 5 HELIX 4 4 SER H 166 ALA H 168 5 3 HELIX 5 5 LYS H 211 ASN H 214 5 4 HELIX 6 6 GLN L 80 GLU L 84 5 5 HELIX 7 7 SER L 129 ALA L 135 1 7 HELIX 8 8 THR L 189 SER L 195 1 7 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 THR H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 A 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 B 6 GLU H 10 ARG H 12 0 SHEET 2 B 6 THR H 117 VAL H 121 1 O THR H 120 N ARG H 12 SHEET 3 B 6 ALA H 92 ASP H 99 -1 N ALA H 92 O VAL H 119 SHEET 4 B 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 B 6 THR H 58 TYR H 60 -1 O THR H 59 N ILE H 50 SHEET 1 C 4 GLU H 10 ARG H 12 0 SHEET 2 C 4 THR H 117 VAL H 121 1 O THR H 120 N ARG H 12 SHEET 3 C 4 ALA H 92 ASP H 99 -1 N ALA H 92 O VAL H 119 SHEET 4 C 4 PRO H 110 TRP H 113 -1 O LYS H 111 N ARG H 98 SHEET 1 D 4 SER H 130 LEU H 134 0 SHEET 2 D 4 THR H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 D 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 D 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 E 4 SER H 130 LEU H 134 0 SHEET 2 E 4 THR H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 E 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 E 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 F 3 THR H 161 TRP H 164 0 SHEET 2 F 3 ILE H 205 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 F 3 THR H 215 ARG H 220 -1 O VAL H 217 N VAL H 208 SHEET 1 G 5 SER L 9 GLY L 12 0 SHEET 2 G 5 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 G 5 ALA L 85 ASP L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 G 5 VAL L 34 GLN L 39 -1 N ASN L 35 O ALA L 90 SHEET 5 G 5 LYS L 46 ILE L 49 -1 O LEU L 48 N TRP L 36 SHEET 1 H 4 SER L 9 GLY L 12 0 SHEET 2 H 4 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 H 4 ALA L 85 ASP L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 H 4 GLY L 98 PHE L 101 -1 O VAL L 100 N ALA L 91 SHEET 1 I 3 VAL L 18 SER L 23 0 SHEET 2 I 3 SER L 71 ILE L 76 -1 O ILE L 76 N VAL L 18 SHEET 3 I 3 PHE L 63 SER L 68 -1 N SER L 64 O ALA L 75 SHEET 1 J 4 SER L 122 PHE L 126 0 SHEET 2 J 4 ALA L 138 PHE L 147 -1 O LEU L 143 N THR L 124 SHEET 3 J 4 TYR L 180 LEU L 188 -1 O SER L 184 N CYS L 142 SHEET 4 J 4 VAL L 167 THR L 169 -1 N GLU L 168 O TYR L 185 SHEET 1 K 4 SER L 122 PHE L 126 0 SHEET 2 K 4 ALA L 138 PHE L 147 -1 O LEU L 143 N THR L 124 SHEET 3 K 4 TYR L 180 LEU L 188 -1 O SER L 184 N CYS L 142 SHEET 4 K 4 SER L 173 LYS L 174 -1 N SER L 173 O ALA L 181 SHEET 1 L 4 SER L 161 VAL L 163 0 SHEET 2 L 4 THR L 153 ALA L 158 -1 N ALA L 158 O SER L 161 SHEET 3 L 4 TYR L 199 HIS L 205 -1 O GLN L 202 N ALA L 155 SHEET 4 L 4 SER L 208 VAL L 214 -1 O VAL L 210 N VAL L 203 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 150 CYS H 206 1555 1555 2.04 SSBOND 3 CYS H 226 CYS L 219 1555 1555 2.04 SSBOND 4 CYS L 22 CYS L 89 1555 1555 2.05 SSBOND 5 CYS L 142 CYS L 201 1555 1555 2.05 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 PHE H 156 PRO H 157 0 -4.75 CISPEP 2 GLU H 158 PRO H 159 0 1.93 CISPEP 3 TYR L 148 PRO L 149 0 -2.37 CRYST1 54.741 71.068 118.597 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008432 0.00000 HETATM 1 N PCA H 1 -14.225 14.172 15.344 1.00 16.87 N ANISOU 1 N PCA H 1 2342 2008 2059 -861 -287 869 N HETATM 2 CA PCA H 1 -14.500 12.754 15.163 1.00 16.88 C ANISOU 2 CA PCA H 1 2264 2101 2048 -735 -242 819 C HETATM 3 CB PCA H 1 -13.295 11.923 15.609 1.00 17.26 C ANISOU 3 CB PCA H 1 2195 2304 2059 -758 -211 826 C HETATM 4 CG PCA H 1 -12.124 12.892 15.658 1.00 16.65 C ANISOU 4 CG PCA H 1 2102 2272 1953 -915 -230 909 C HETATM 5 CD PCA H 1 -12.800 14.237 15.607 1.00 15.93 C ANISOU 5 CD PCA H 1 2143 2008 1901 -977 -280 925 C HETATM 6 OE PCA H 1 -12.205 15.309 15.761 1.00 17.95 O ANISOU 6 OE PCA H 1 2440 2226 2153 -1114 -316 981 O HETATM 7 C PCA H 1 -15.754 12.359 15.925 1.00 14.92 C ANISOU 7 C PCA H 1 2065 1750 1854 -633 -251 722 C HETATM 8 O PCA H 1 -16.085 12.980 16.932 1.00 16.17 O ANISOU 8 O PCA H 1 2286 1805 2053 -662 -283 684 O