HEADER    OXIDOREDUCTASE                          31-MAY-10   3N9L              
TITLE     CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE AND NOG          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN;                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PHD DOMAIN, UNP RESIDUES 201-724;                          
COMPND   5 SYNONYM: LYSINE DEMETHYLASE;                                         
COMPND   6 EC: 1.14.11.27;                                                      
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: HISTONE H3 PEPTIDE;                                        
COMPND  10 CHAIN: B;                                                            
COMPND  11 FRAGMENT: JMJC DOMAIN, UNP RESIDUES 2-16;                            
COMPND  12 ENGINEERED: YES;                                                     
COMPND  13 OTHER_DETAILS: H3K4ME3                                               
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS;                         
SOURCE   3 ORGANISM_TAXID: 6239;                                                
SOURCE   4 GENE: F29B9.2;                                                       
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET15B;                                   
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS;                         
SOURCE  13 ORGANISM_TAXID: 6239;                                                
SOURCE  14 OTHER_DETAILS: CHEMICAL SYNTHESIS, PURCHASED FROM A COMPANY          
KEYWDS    HISTONE, METHYLATION, DEMETHYLASE, PHD, JMJC, FE(II) AND ALPHA-KG     
KEYWDS   2 (ALPHA-KETOGLUTARATE)-DEPENDENT DIOXYGENASE FAMILY, OXIDOREDUCTASE   
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.YANG,L.HU,P.WANG,H.HOU,C.D.CHEN,Y.XU                                
REVDAT   3   01-NOV-23 3N9L    1       REMARK SEQADV LINK                       
REVDAT   2   11-AUG-10 3N9L    1       JRNL                                     
REVDAT   1   30-JUN-10 3N9L    0                                                
JRNL        AUTH   Y.YANG,L.HU,P.WANG,H.HOU,Y.LIN,Y.LIU,Z.LI,R.GONG,X.FENG,     
JRNL        AUTH 2 L.ZHOU,W.ZHANG,Y.DONG,H.YANG,H.LIN,Y.WANG,C.D.CHEN,Y.XU      
JRNL        TITL   STRUCTURAL INSIGHTS INTO A DUAL-SPECIFICITY HISTONE          
JRNL        TITL 2 DEMETHYLASE CEKDM7A FROM CAENORHABDITIS ELEGANS              
JRNL        REF    CELL RES.                     V.  20   886 2010              
JRNL        REFN                   ISSN 1001-0602                               
JRNL        PMID   20567261                                                     
JRNL        DOI    10.1038/CR.2010.86                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.6.1_353)                    
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 44.19                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.150                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 96.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 15325                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.200                           
REMARK   3   R VALUE            (WORKING SET) : 0.197                           
REMARK   3   FREE R VALUE                     : 0.255                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.010                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 768                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 44.1948 -  4.7796    0.99     3130   170  0.1844 0.2091        
REMARK   3     2  4.7796 -  3.7944    0.99     2961   151  0.1646 0.2332        
REMARK   3     3  3.7944 -  3.3149    0.98     2946   164  0.1968 0.2774        
REMARK   3     4  3.3149 -  3.0119    0.95     2788   149  0.2298 0.3040        
REMARK   3     5  3.0119 -  2.7961    0.91     2732   134  0.2374 0.3062        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.33                                          
REMARK   3   B_SOL              : 26.83                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.310            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.830           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 41.98                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 44.94                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.82740                                              
REMARK   3    B22 (A**2) : 3.63620                                              
REMARK   3    B33 (A**2) : -4.46370                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.004           4161                                  
REMARK   3   ANGLE     :  0.832           5617                                  
REMARK   3   CHIRALITY :  0.055            579                                  
REMARK   3   PLANARITY :  0.003            726                                  
REMARK   3   DIHEDRAL  : 14.678           1569                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3N9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000059552.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 06-MAY-09                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SSRF                               
REMARK 200  BEAMLINE                       : BL17U                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.2828                             
REMARK 200  MONOCHROMATOR                  : SAGITALLY FOCUSED SI(111)          
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RAYONIX MX-225                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 15846                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.796                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.90                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASES                                                
REMARK 200 STARTING MODEL: PDB ENTRY 3N9M                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 49.27                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.2M SODIUM FLUORIDE,      
REMARK 280  0.1M BIS-TRIS/HEPES , PH 7.0, VAPOR DIFFUSION, HANGING DROP,        
REMARK 280  TEMPERATURE 277K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       34.45600            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       51.24550            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       43.63200            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       51.24550            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       34.45600            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       43.63200            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 23770 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLU A   184                                                      
REMARK 465     PHE A   185                                                      
REMARK 465     HIS A   186                                                      
REMARK 465     MET A   187                                                      
REMARK 465     GLU A   188                                                      
REMARK 465     GLN A   189                                                      
REMARK 465     LYS A   190                                                      
REMARK 465     THR A   191                                                      
REMARK 465     ASP A   209                                                      
REMARK 465     LEU A   210                                                      
REMARK 465     ILE A   211                                                      
REMARK 465     ALA A   212                                                      
REMARK 465     LEU A   213                                                      
REMARK 465     GLU A   214                                                      
REMARK 465     GLU A   215                                                      
REMARK 465     GLU A   216                                                      
REMARK 465     LYS A   217                                                      
REMARK 465     LYS A   218                                                      
REMARK 465     LYS A   219                                                      
REMARK 465     GLU A   220                                                      
REMARK 465     LYS A   221                                                      
REMARK 465     GLU A   222                                                      
REMARK 465     LYS A   223                                                      
REMARK 465     PRO A   224                                                      
REMARK 465     LEU A   225                                                      
REMARK 465     MET A   226                                                      
REMARK 465     SER A   227                                                      
REMARK 465     LYS A   228                                                      
REMARK 465     LYS A   229                                                      
REMARK 465     LYS A   230                                                      
REMARK 465     SER A   231                                                      
REMARK 465     HIS A   232                                                      
REMARK 465     HIS A   233                                                      
REMARK 465     HIS A   234                                                      
REMARK 465     LYS A   235                                                      
REMARK 465     ASN A   705                                                      
REMARK 465     LYS A   706                                                      
REMARK 465     PRO A   707                                                      
REMARK 465     MET A   708                                                      
REMARK 465     GLY A   709                                                      
REMARK 465     LEU A   710                                                      
REMARK 465     LYS A   711                                                      
REMARK 465     ALA B     7                                                      
REMARK 465     ARG B     8                                                      
REMARK 465     LYS B     9                                                      
REMARK 465     SER B    10                                                      
REMARK 465     THR B    11                                                      
REMARK 465     GLY B    12                                                      
REMARK 465     GLY B    13                                                      
REMARK 465     LYS B    14                                                      
REMARK 465     ALA B    15                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 196       34.09    -80.15                                   
REMARK 500    CYS A 201      -29.72     71.79                                   
REMARK 500    ASP A 238     -142.25     59.38                                   
REMARK 500    ASP A 245       28.60    -76.46                                   
REMARK 500    SER A 246      -67.25   -134.22                                   
REMARK 500    PRO A 371      151.24    -49.42                                   
REMARK 500    ASN A 421      106.93   -166.14                                   
REMARK 500    SER A 424       77.99   -109.05                                   
REMARK 500    TRP A 453       65.84   -111.75                                   
REMARK 500    GLU A 468       39.00    -73.45                                   
REMARK 500    THR A 536       -6.74   -147.48                                   
REMARK 500    GLU A 604      -82.61    -88.55                                   
REMARK 500    VAL A 627      -73.23   -118.54                                   
REMARK 500    GLU A 638     -150.20   -101.60                                   
REMARK 500    SER A 640      105.18   -163.10                                   
REMARK 500    GLU A 646       29.70   -151.51                                   
REMARK 500    LEU A 670       27.62    177.48                                   
REMARK 500    PRO A 672     -163.93    -63.46                                   
REMARK 500    GLU A 673     -148.56    -95.37                                   
REMARK 500    LYS A 674     -116.57    -80.22                                   
REMARK 500    ASN A 675      136.41    -33.38                                   
REMARK 500    ALA A 676     -159.28     37.54                                   
REMARK 500    THR B   3     -169.17   -120.01                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             FE2 A   1  FE                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 OGA A   4   O2'                                                    
REMARK 620 2 OGA A   4   O2   72.6                                              
REMARK 620 3 HOH A  41   O    92.7  87.7                                        
REMARK 620 4 HIS A 495   NE2  99.4 165.6 104.8                                  
REMARK 620 5 ASP A 497   OD2 149.9  79.9  98.4 104.6                            
REMARK 620 6 HIS A 567   NE2  88.1  77.9 164.7  90.1  74.1                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A   2  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 198   SG                                                     
REMARK 620 2 CYS A 201   SG   91.8                                              
REMARK 620 3 HIS A 252   ND1  99.8  80.7                                        
REMARK 620 4 CYS A 255   SG  113.8 105.3 145.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A   3  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 244   SG                                                     
REMARK 620 2 CYS A 247   SG   88.5                                              
REMARK 620 3 CYS A 271   SG   91.5 102.4                                        
REMARK 620 4 CYS A 274   SG  117.5 124.2 123.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1                   
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2                    
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3                    
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 4                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3N9M   RELATED DB: PDB                                   
REMARK 900 APO LYSINE DEMETHYLASE                                               
REMARK 900 RELATED ID: 3N9N   RELATED DB: PDB                                   
REMARK 900 LYSINE DEMETHYLASE WITH HISTONE H3(K4ME3K9ME2) AND NOG               
REMARK 900 RELATED ID: 3N9O   RELATED DB: PDB                                   
REMARK 900 LYSINE DEMETHYLASE WITH HISTONE H3(K4ME3) AND HISTONE H3(K9ME2) AND  
REMARK 900 NOG                                                                  
REMARK 900 RELATED ID: 3N9P   RELATED DB: PDB                                   
REMARK 900 LYSINE DEMETHYLASE WITH HISTONE H3(K4ME3K27ME2) AND NOG              
REMARK 900 RELATED ID: 3N9Q   RELATED DB: PDB                                   
REMARK 900 LYSINE DEMETHYLASE WITH HISTONE H3(K4ME3) AND HISTONE H3(K27ME2)     
REMARK 900 AND NOG                                                              
DBREF  3N9L A  188   711  UNP    Q9GYI0   Q9GYI0_CAEEL   201    724             
DBREF  3N9L B    1    15  UNP    P08898   H3_CAEEL         2     16             
SEQADV 3N9L GLU A  184  UNP  Q9GYI0              EXPRESSION TAG                 
SEQADV 3N9L PHE A  185  UNP  Q9GYI0              EXPRESSION TAG                 
SEQADV 3N9L HIS A  186  UNP  Q9GYI0              EXPRESSION TAG                 
SEQADV 3N9L MET A  187  UNP  Q9GYI0              EXPRESSION TAG                 
SEQRES   1 A  528  GLU PHE HIS MET GLU GLN LYS THR PRO LYS GLU SER ASP          
SEQRES   2 A  528  ARG CYS GLY GLY CYS GLY LYS PHE THR HIS GLU ASP ASP          
SEQRES   3 A  528  LEU ILE ALA LEU GLU GLU GLU LYS LYS LYS GLU LYS GLU          
SEQRES   4 A  528  LYS PRO LEU MET SER LYS LYS LYS SER HIS HIS HIS LYS          
SEQRES   5 A  528  LYS ASN ASP PHE GLN TRP ILE GLY CYS ASP SER CYS GLN          
SEQRES   6 A  528  THR TRP TYR HIS PHE LEU CYS SER GLY LEU GLU GLN PHE          
SEQRES   7 A  528  GLU TYR TYR LEU TYR GLU LYS PHE PHE CYS PRO LYS CYS          
SEQRES   8 A  528  VAL PRO HIS THR GLY HIS SER ILE ARG TYR LYS VAL VAL          
SEQRES   9 A  528  ALA PRO HIS ARG TYR ARG TRP TYR SER PRO ASN GLU LYS          
SEQRES  10 A  528  HIS LEU GLY ILE GLU VAL GLY SER LYS THR TRP ILE GLU          
SEQRES  11 A  528  ASP PHE ILE THR ARG GLU ASN THR VAL PRO SER PRO THR          
SEQRES  12 A  528  ASP ASP GLU VAL CYS ILE VAL GLU ASP GLY TYR GLU PHE          
SEQRES  13 A  528  ARG ARG GLU PHE GLU LYS LEU GLY GLY ALA ASP ASN TRP          
SEQRES  14 A  528  GLY LYS VAL PHE MET VAL LYS ASP MET ASP GLY LEU ASN          
SEQRES  15 A  528  MET THR MET PRO LYS PRO GLY PHE ASP LEU GLU ASP VAL          
SEQRES  16 A  528  VAL LYS ILE MET GLY SER ASP TYR GLU VAL ASP THR ILE          
SEQRES  17 A  528  ASP VAL TYR ASN GLN SER THR TYR SER MET LYS LEU ASP          
SEQRES  18 A  528  THR PHE ARG LYS LEU PHE ARG ASP THR LYS ASN ARG PRO          
SEQRES  19 A  528  LEU LEU TYR ASN PHE LEU SER LEU GLU PHE SER ASP ASN          
SEQRES  20 A  528  ASN GLU MET LYS GLU ILE ALA LYS PRO PRO ARG PHE VAL          
SEQRES  21 A  528  GLN GLU ILE SER MET VAL ASN ARG LEU TRP PRO ASP VAL          
SEQRES  22 A  528  SER GLY ALA GLU TYR ILE LYS LEU LEU GLN ARG GLU GLU          
SEQRES  23 A  528  TYR LEU PRO GLU ASP GLN ARG PRO LYS VAL GLU GLN PHE          
SEQRES  24 A  528  CYS LEU ALA GLY MET ALA GLY SER TYR THR ASP PHE HIS          
SEQRES  25 A  528  VAL ASP PHE GLY GLY SER SER VAL TYR TYR HIS ILE LEU          
SEQRES  26 A  528  LYS GLY GLU LYS ILE PHE TYR ILE ALA ALA PRO THR GLU          
SEQRES  27 A  528  GLN ASN PHE ALA ALA TYR GLN ALA HIS GLU THR SER PRO          
SEQRES  28 A  528  ASP THR THR THR TRP PHE GLY ASP ILE ALA ASN GLY ALA          
SEQRES  29 A  528  VAL LYS ARG VAL VAL ILE LYS GLU GLY GLN THR LEU LEU          
SEQRES  30 A  528  ILE PRO ALA GLY TRP ILE HIS ALA VAL LEU THR PRO VAL          
SEQRES  31 A  528  ASP SER LEU VAL PHE GLY GLY ASN PHE LEU HIS LEU GLY          
SEQRES  32 A  528  ASN LEU GLU MET GLN MET ARG VAL TYR HIS LEU GLU ASN          
SEQRES  33 A  528  ALA ILE ARG LYS GLU ILE ARG SER GLU GLU LYS PHE TYR          
SEQRES  34 A  528  PHE PRO ASN PHE GLU LEU LEU HIS TRP MET TYR MET ARG          
SEQRES  35 A  528  ASN VAL LEU LEU GLU LYS ILE THR GLU ALA ASN GLN GLU          
SEQRES  36 A  528  GLY SER ASP MET ARG GLU GLN GLU LYS ASN ILE TRP THR          
SEQRES  37 A  528  ALA SER GLN ILE MET LYS ALA GLU MET GLU ARG TRP MET          
SEQRES  38 A  528  ASP ARG GLU LEU ARG LEU GLY PRO GLU LYS ASN ALA ILE          
SEQRES  39 A  528  LEU PRO THR ASP ASP LYS ASN LYS ILE MET ILE SER VAL          
SEQRES  40 A  528  ARG LYS GLN ILE GLU ILE GLN THR LYS ILE GLN ASN ALA          
SEQRES  41 A  528  LYS ASN LYS PRO MET GLY LEU LYS                              
SEQRES   1 B   15  ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY          
SEQRES   2 B   15  LYS ALA                                                      
MODRES 3N9L M3L B    4  LYS  N-TRIMETHYLLYSINE                                  
HET    M3L  B   4      12                                                       
HET    FE2  A   1       1                                                       
HET     ZN  A   2       1                                                       
HET     ZN  A   3       1                                                       
HET    OGA  A   4      10                                                       
HETNAM     M3L N-TRIMETHYLLYSINE                                                
HETNAM     FE2 FE (II) ION                                                      
HETNAM      ZN ZINC ION                                                         
HETNAM     OGA N-OXALYLGLYCINE                                                  
FORMUL   2  M3L    C9 H21 N2 O2 1+                                              
FORMUL   3  FE2    FE 2+                                                        
FORMUL   4   ZN    2(ZN 2+)                                                     
FORMUL   6  OGA    C4 H5 N O5                                                   
FORMUL   7  HOH   *96(H2 O)                                                     
HELIX    1   1 LYS A  193  ARG A  197  5                                   5    
HELIX    2   2 LEU A  254  SER A  256  5                                   3    
HELIX    3   3 GLU A  259  TYR A  263  5                                   5    
HELIX    4   4 CYS A  271  THR A  278  5                                   8    
HELIX    5   5 SER A  296  LYS A  300  5                                   5    
HELIX    6   6 SER A  308  GLU A  319  1                                  12    
HELIX    7   7 ASN A  320  VAL A  322  5                                   3    
HELIX    8   8 GLY A  336  LEU A  346  1                                  11    
HELIX    9   9 ASP A  374  GLY A  383  1                                  10    
HELIX   10  10 TYR A  394  GLN A  396  5                                   3    
HELIX   11  11 LEU A  403  ASP A  412  1                                  10    
HELIX   12  12 GLU A  432  ILE A  436  5                                   5    
HELIX   13  13 PRO A  440  SER A  447  1                                   8    
HELIX   14  14 SER A  447  TRP A  453  1                                   7    
HELIX   15  15 SER A  457  ARG A  467  1                                  11    
HELIX   16  16 ASP A  497  SER A  501  5                                   5    
HELIX   17  17 THR A  520  SER A  533  1                                  14    
HELIX   18  18 TRP A  539  ALA A  544  5                                   6    
HELIX   19  19 HIS A  584  GLY A  586  5                                   3    
HELIX   20  20 ASN A  587  ILE A  605  1                                  19    
HELIX   21  21 GLU A  608  TYR A  612  5                                   5    
HELIX   22  22 ASN A  615  VAL A  627  1                                  13    
HELIX   23  23 VAL A  627  GLU A  638  1                                  12    
HELIX   24  24 ASP A  641  GLU A  646  1                                   6    
HELIX   25  25 GLU A  646  ARG A  669  1                                  24    
HELIX   26  26 PRO A  679  LYS A  704  1                                  26    
SHEET    1   A 3 TRP A 250  HIS A 252  0                                        
SHEET    2   A 3 GLN A 240  GLY A 243 -1  N  ILE A 242   O  TYR A 251           
SHEET    3   A 3 THR B   3  GLN B   5 -1  O  M3L B   4   N  TRP A 241           
SHEET    1   B 2 TYR A 266  LYS A 268  0                                        
SHEET    2   B 2 ILE A 282  ARG A 283 -1  O  ILE A 282   N  GLU A 267           
SHEET    1   C 6 VAL A 330  ASP A 335  0                                        
SHEET    2   C 6 VAL A 355  ASP A 360  1  O  MET A 357   N  VAL A 333           
SHEET    3   C 6 THR A 558  ILE A 561 -1  O  LEU A 560   N  PHE A 356           
SHEET    4   C 6 SER A 502  ALA A 517 -1  N  TYR A 505   O  LEU A 559           
SHEET    5   C 6 ILE A 566  PHE A 582 -1  O  PHE A 578   N  HIS A 506           
SHEET    6   C 6 SER A 490  HIS A 495 -1  N  SER A 490   O  THR A 571           
SHEET    1   D 7 THR A 398  LYS A 402  0                                        
SHEET    2   D 7 GLU A 387  ASP A 392 -1  N  THR A 390   O  TYR A 399           
SHEET    3   D 7 TYR A 420  SER A 424 -1  O  ASN A 421   N  ILE A 391           
SHEET    4   D 7 PHE A 482  GLY A 486 -1  O  ALA A 485   N  PHE A 422           
SHEET    5   D 7 ILE A 566  PHE A 582 -1  O  VAL A 577   N  LEU A 484           
SHEET    6   D 7 SER A 502  ALA A 517 -1  N  HIS A 506   O  PHE A 578           
SHEET    7   D 7 LYS A 549  LYS A 554 -1  O  ILE A 553   N  LYS A 512           
LINK         C   THR B   3                 N   M3L B   4     1555   1555  1.33  
LINK         C   M3L B   4                 N   GLN B   5     1555   1555  1.33  
LINK        FE   FE2 A   1                 O2' OGA A   4     1555   1555  2.11  
LINK        FE   FE2 A   1                 O2  OGA A   4     1555   1555  2.54  
LINK        FE   FE2 A   1                 O   HOH A  41     1555   1555  2.03  
LINK        FE   FE2 A   1                 NE2 HIS A 495     1555   1555  2.12  
LINK        FE   FE2 A   1                 OD2 ASP A 497     1555   1555  2.35  
LINK        FE   FE2 A   1                 NE2 HIS A 567     1555   1555  2.30  
LINK        ZN    ZN A   2                 SG  CYS A 198     1555   1555  2.64  
LINK        ZN    ZN A   2                 SG  CYS A 201     1555   1555  2.63  
LINK        ZN    ZN A   2                 ND1 HIS A 252     1555   1555  2.44  
LINK        ZN    ZN A   2                 SG  CYS A 255     1555   1555  2.59  
LINK        ZN    ZN A   3                 SG  CYS A 244     1555   1555  2.70  
LINK        ZN    ZN A   3                 SG  CYS A 247     1555   1555  2.62  
LINK        ZN    ZN A   3                 SG  CYS A 271     1555   1555  2.68  
LINK        ZN    ZN A   3                 SG  CYS A 274     1555   1555  2.64  
CISPEP   1 CYS A  198    GLY A  199          0         2.92                     
CISPEP   2 GLY A  199    GLY A  200          0         4.00                     
CISPEP   3 GLY A  200    CYS A  201          0         0.16                     
CISPEP   4 VAL A  306    GLY A  307          0        -2.91                     
CISPEP   5 GLY A  639    SER A  640          0        -4.37                     
CISPEP   6 ALA A  676    ILE A  677          0       -13.08                     
SITE     1 AC1  5 OGA A   4  HOH A  41  HIS A 495  ASP A 497                    
SITE     2 AC1  5 HIS A 567                                                     
SITE     1 AC2  4 CYS A 198  CYS A 201  HIS A 252  CYS A 255                    
SITE     1 AC3  4 CYS A 244  CYS A 247  CYS A 271  CYS A 274                    
SITE     1 AC4 10 FE2 A   1  HOH A  41  LEU A 423  THR A 492                    
SITE     2 AC4 10 HIS A 495  ASP A 497  TYR A 505  LYS A 512                    
SITE     3 AC4 10 HIS A 567  VAL A 569                                          
CRYST1   68.912   87.264  102.491  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014511  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.011459  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009757        0.00000