HEADER IMMUNE SYSTEM 01-JUN-10 3NA9 TITLE CRYSTAL STRUCTURE OF FAB15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB15 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB15 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS ANTIBODY, ANTIBODY CANONICAL STRUCTURE, THERMAL STABILITY, NON-X-PRO KEYWDS 2 CIS PEPTIDE BOND, ANTIBODY ENGINEERING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.LUO REVDAT 2 31-MAR-21 3NA9 1 SOURCE REMARK LINK REVDAT 1 18-AUG-10 3NA9 0 JRNL AUTH J.LUO,Y.FENG,G.L.GILLILAND JRNL TITL CO-EVOLUTION OF ANTIBODY STABILITY AND VK CDR-L3 CANONICAL JRNL TITL 2 STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 53127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9783 - 4.1886 0.88 3155 147 0.1719 0.2134 REMARK 3 2 4.1886 - 3.3262 0.98 3495 147 0.1466 0.1806 REMARK 3 3 3.3262 - 2.9062 0.99 3516 150 0.1569 0.1765 REMARK 3 4 2.9062 - 2.6407 0.99 3498 155 0.1689 0.2080 REMARK 3 5 2.6407 - 2.4515 0.99 3513 135 0.1653 0.1989 REMARK 3 6 2.4515 - 2.3070 0.99 3455 153 0.1639 0.1778 REMARK 3 7 2.3070 - 2.1915 0.98 3454 160 0.1597 0.1810 REMARK 3 8 2.1915 - 2.0962 0.98 3466 145 0.1586 0.1812 REMARK 3 9 2.0962 - 2.0155 0.98 3453 141 0.1590 0.1759 REMARK 3 10 2.0155 - 1.9460 0.97 3466 147 0.1619 0.1982 REMARK 3 11 1.9460 - 1.8851 0.97 3404 143 0.1691 0.2039 REMARK 3 12 1.8851 - 1.8312 0.96 3388 142 0.1748 0.2189 REMARK 3 13 1.8312 - 1.7830 0.96 3383 123 0.1845 0.1794 REMARK 3 14 1.7830 - 1.7395 0.95 3349 136 0.1908 0.2112 REMARK 3 15 1.7395 - 1.7000 0.85 2983 125 0.2112 0.2339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 50.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.56270 REMARK 3 B22 (A**2) : 4.51240 REMARK 3 B33 (A**2) : 1.05030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.63190 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3532 REMARK 3 ANGLE : 1.099 4802 REMARK 3 CHIRALITY : 0.077 533 REMARK 3 PLANARITY : 0.004 614 REMARK 3 DIHEDRAL : 12.935 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN L AND RESSEQ 1:109 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5316 5.5193 24.1913 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.1889 REMARK 3 T33: 0.1942 T12: -0.0233 REMARK 3 T13: -0.0124 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.5307 L22: 0.5734 REMARK 3 L33: 1.9549 L12: 0.2802 REMARK 3 L13: -0.2475 L23: -0.7616 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.1826 S13: 0.1040 REMARK 3 S21: 0.2400 S22: -0.0449 S23: -0.0874 REMARK 3 S31: -0.1643 S32: -0.0395 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN L AND RESSEQ 110:214 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5818 9.1285 0.2827 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.1426 REMARK 3 T33: 0.1789 T12: -0.0089 REMARK 3 T13: 0.0106 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.7006 L22: 1.0040 REMARK 3 L33: 0.5773 L12: -0.8894 REMARK 3 L13: 0.3070 L23: -0.4415 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.0177 S13: 0.1470 REMARK 3 S21: -0.0327 S22: 0.0420 S23: -0.0129 REMARK 3 S31: -0.0202 S32: 0.0675 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN H AND RESSEQ 1:112 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6465 -6.8513 36.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.3239 REMARK 3 T33: 0.2239 T12: -0.0472 REMARK 3 T13: -0.0199 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 2.2344 L22: 0.2255 REMARK 3 L33: 1.5479 L12: 0.6679 REMARK 3 L13: 0.9569 L23: 0.3263 REMARK 3 S TENSOR REMARK 3 S11: 0.1934 S12: -0.4150 S13: -0.2315 REMARK 3 S21: 0.1771 S22: -0.0993 S23: -0.0543 REMARK 3 S31: 0.1793 S32: -0.1913 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN H AND RESSEQ 113:225 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4726 -6.1328 1.1445 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.0795 REMARK 3 T33: 0.1319 T12: -0.0104 REMARK 3 T13: 0.0030 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.0165 L22: 1.4634 REMARK 3 L33: 0.8683 L12: 0.3510 REMARK 3 L13: 0.0223 L23: 0.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.1727 S13: -0.1001 REMARK 3 S21: -0.2547 S22: 0.0499 S23: 0.0307 REMARK 3 S31: 0.0316 S32: 0.0013 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : ACCEL SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53562 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 16% PEG MME REMARK 280 5000, 0.1 M ZINC ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.28400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -243.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 404 O HOH H 421 1.93 REMARK 500 O HOH L 365 O HOH L 490 1.97 REMARK 500 O HOH H 326 O HOH H 434 1.98 REMARK 500 O HOH L 402 O HOH L 429 2.04 REMARK 500 O HOH L 400 O HOH H 399 2.06 REMARK 500 O HOH L 282 O HOH L 352 2.07 REMARK 500 O HOH L 392 O HOH L 395 2.09 REMARK 500 O HOH H 323 O HOH H 484 2.09 REMARK 500 O HOH H 334 O HOH H 450 2.10 REMARK 500 O THR H 135 O HOH H 395 2.10 REMARK 500 O HOH H 441 O HOH H 481 2.11 REMARK 500 O HOH L 457 O HOH H 340 2.13 REMARK 500 O HOH L 411 O HOH L 414 2.13 REMARK 500 O HOH H 283 O HOH H 365 2.14 REMARK 500 O HOH L 330 O HOH L 428 2.14 REMARK 500 O HOH L 318 O HOH L 346 2.16 REMARK 500 O HOH L 438 O HOH L 461 2.17 REMARK 500 O HOH L 461 O HOH L 469 2.19 REMARK 500 OE1 GLN L 147 O HOH L 451 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 396 O HOH H 409 2555 2.00 REMARK 500 O HOH L 378 O HOH H 367 2555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -45.06 73.66 REMARK 500 ALA L 84 -179.76 -178.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 217 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 123 OE1 REMARK 620 2 ACT L 219 OXT 90.0 REMARK 620 3 HOH L 403 O 100.4 113.2 REMARK 620 4 HIS H 212 NE2 122.5 120.4 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 216 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN L 137 OD1 REMARK 620 2 ASN L 138 ND2 92.7 REMARK 620 3 HIS H 164 NE2 111.3 84.1 REMARK 620 4 HOH H 236 O 85.4 173.0 102.9 REMARK 620 5 HOH H 340 O 162.5 70.1 65.5 112.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 151 OD2 REMARK 620 2 HIS L 189 ND1 107.7 REMARK 620 3 ACT L 218 OXT 100.9 110.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L 214 O REMARK 620 2 HIS H 213 NE2 111.4 REMARK 620 3 HIS H 217 NE2 98.9 99.9 REMARK 620 4 ACT H 222 OXT 112.0 101.2 132.5 REMARK 620 5 ACT H 222 O 84.9 153.0 98.5 51.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 72 OD1 REMARK 620 2 SER H 74 OG 61.8 REMARK 620 3 HOH H 321 O 71.8 69.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 219 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 214 NE2 REMARK 620 2 HIS H 216 NE2 95.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 220 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 215 NE2 REMARK 620 2 HOH H 230 O 90.4 REMARK 620 3 HOH H 407 O 98.8 138.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT L 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT L 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 225 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NCJ RELATED DB: PDB REMARK 900 RELATED ID: 3NAA RELATED DB: PDB REMARK 900 RELATED ID: 3NAB RELATED DB: PDB REMARK 900 RELATED ID: 3NAC RELATED DB: PDB DBREF 3NA9 L 1 214 PDB 3NA9 3NA9 1 214 DBREF 3NA9 H 1 217 PDB 3NA9 3NA9 1 217 SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE GLY LEU TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN GLY SEQRES 8 L 214 ASN THR LEU SER TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 225 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 225 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 225 TYR SER PHE THR ASN TYR TRP VAL GLY TRP VAL ARG GLN SEQRES 4 H 225 MET PRO GLY LYS GLY LEU GLU TRP MET GLY PHE ILE ASP SEQRES 5 H 225 PRO SER ASP SER TYR THR ASN TYR ALA PRO SER PHE GLN SEQRES 6 H 225 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 225 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 225 ALA MET TYR TYR CYS ALA ARG GLU LEU TYR GLN GLY TYR SEQRES 9 H 225 MET ASP THR PHE ASP SER TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 225 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 225 PRO LEU ALA PRO CYS SER ARG SER THR SER GLU SER THR SEQRES 12 H 225 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 225 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 225 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 225 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 225 SER LEU GLY THR LYS THR TYR THR CYS ASN VAL ASP HIS SEQRES 17 H 225 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL HIS HIS SEQRES 18 H 225 HIS HIS HIS HIS HET ZN L 215 1 HET ZN L 216 1 HET ZN L 217 1 HET ACT L 218 4 HET ACT L 219 4 HET ZN H 218 1 HET ZN H 219 1 HET ZN H 220 1 HET ZN H 221 1 HET ACT H 222 4 HET ACT H 223 4 HET GOL H 224 6 HET GOL H 225 6 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 7(ZN 2+) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 14 GOL 2(C3 H8 O3) FORMUL 16 HOH *491(H2 O) HELIX 1 1 GLN L 79 PHE L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 HIS L 189 1 7 HELIX 4 4 SER H 28 TYR H 32 5 5 HELIX 5 5 LYS H 73 ILE H 75 5 3 HELIX 6 6 LYS H 83 THR H 87 5 5 HELIX 7 7 SER H 156 ALA H 158 5 3 HELIX 8 8 SER H 187 THR H 191 5 5 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 SER L 10 ALA L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 C 4 SER L 10 ALA L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 D 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 D 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 F 4 GLN H 3 GLN H 6 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 F 4 THR H 77 TRP H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 F 4 THR H 68 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 G 6 GLU H 10 LYS H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 G 6 ALA H 88 GLN H 98 -1 N ALA H 88 O VAL H 109 SHEET 4 G 6 VAL H 34 GLN H 39 -1 N GLY H 35 O ALA H 93 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 G 6 THR H 57 TYR H 59 -1 O ASN H 58 N PHE H 50 SHEET 1 H 4 GLU H 10 LYS H 12 0 SHEET 2 H 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 H 4 ALA H 88 GLN H 98 -1 N ALA H 88 O VAL H 109 SHEET 4 H 4 MET H 100A TRP H 103 -1 O THR H 100C N LEU H 96 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 I 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 I 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 J 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 K 3 THR H 151 TRP H 154 0 SHEET 2 K 3 THR H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 K 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.07 SSBOND 3 CYS L 214 CYS H 127 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 5 CYS H 140 CYS H 196 1555 1555 2.05 LINK OE1 GLU L 123 ZN ZN L 217 1555 1555 2.10 LINK OD1 ASN L 137 ZN ZN L 216 1555 1555 2.10 LINK ND2 ASN L 138 ZN ZN L 216 1555 1555 2.28 LINK OD2 ASP L 151 ZN ZN L 215 1555 1555 1.94 LINK ND1 HIS L 189 ZN ZN L 215 1555 1555 2.10 LINK O CYS L 214 ZN ZN H 218 1555 1555 2.04 LINK ZN ZN L 215 OXT ACT L 218 1555 1555 1.97 LINK ZN ZN L 216 NE2 HIS H 164 1555 1555 2.27 LINK ZN ZN L 216 O HOH H 236 1555 1555 2.25 LINK ZN ZN L 216 O HOH H 340 1555 1555 2.21 LINK ZN ZN L 217 OXT ACT L 219 1555 1555 2.13 LINK ZN ZN L 217 O HOH L 403 1555 1555 2.32 LINK ZN ZN L 217 NE2AHIS H 212 1555 1555 2.15 LINK OD1 ASP H 72 ZN ZN H 221 1555 1555 2.44 LINK OG SER H 74 ZN ZN H 221 1555 1555 2.46 LINK NE2 HIS H 213 ZN ZN H 218 1555 1555 2.10 LINK NE2 HIS H 214 ZN ZN H 219 1555 1555 2.20 LINK NE2 HIS H 215 ZN ZN H 220 1555 1555 2.05 LINK NE2 HIS H 216 ZN ZN H 219 1555 1555 1.93 LINK NE2 HIS H 217 ZN ZN H 218 1555 1555 2.11 LINK ZN ZN H 218 OXT ACT H 222 1555 1555 2.17 LINK ZN ZN H 218 O ACT H 222 1555 1555 2.57 LINK ZN ZN H 220 O HOH H 230 1555 1555 2.19 LINK ZN ZN H 220 O HOH H 407 1555 1555 2.21 LINK ZN ZN H 221 O HOH H 321 1555 1555 2.53 CISPEP 1 SER L 7 PRO L 8 0 -6.90 CISPEP 2 TYR L 140 PRO L 141 0 3.55 CISPEP 3 PHE H 146 PRO H 147 0 -7.56 CISPEP 4 GLU H 148 PRO H 149 0 -0.04 SITE 1 AC1 3 ASP L 151 HIS L 189 ACT L 218 SITE 1 AC2 5 HIS H 164 HOH H 236 HOH H 340 ASN L 137 SITE 2 AC2 5 ASN L 138 SITE 1 AC3 4 HIS H 212 GLU L 123 ACT L 219 HOH L 403 SITE 1 AC4 4 ASP L 151 LYS L 188 HIS L 189 ZN L 215 SITE 1 AC5 8 HIS H 212 HIS H 214 HIS H 217 SER L 121 SITE 2 AC5 8 ASP L 122 GLU L 123 ZN L 217 HOH L 424 SITE 1 AC6 5 HIS H 213 HIS H 214 HIS H 217 ACT H 222 SITE 2 AC6 5 CYS L 214 SITE 1 AC7 4 ASP H 52 ASP H 54 HIS H 214 HIS H 216 SITE 1 AC8 4 HIS H 215 HOH H 230 HOH H 368 HOH H 407 SITE 1 AC9 3 ASP H 72 SER H 74 HOH H 321 SITE 1 BC1 7 SER H 128 HIS H 213 HIS H 214 HIS H 215 SITE 2 BC1 7 HIS H 217 ZN H 218 CYS L 214 SITE 1 BC2 5 LEU H 189 VAL H 211 HIS H 212 HOH H 227 SITE 2 BC2 5 HOH H 443 SITE 1 BC3 12 PHE H 166 PRO H 167 VAL H 169 SER H 177 SITE 2 BC3 12 LEU H 178 SER H 179 HOH H 231 HOH H 276 SITE 3 BC3 12 GLN L 160 SER L 162 SER L 176 THR L 178 SITE 1 BC4 7 TYR H 32 TRP H 33 GLU H 95 TYR H 97 SITE 2 BC4 7 ASP H 100B HIS H 215 HOH H 331 CRYST1 54.431 74.568 64.628 90.00 103.32 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018372 0.000000 0.004350 0.00000 SCALE2 0.000000 0.013411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015901 0.00000