HEADER OXIDOREDUCTASE 02-JUN-10 3NAQ TITLE APO-FORM OF NAD-DEPENDENT FORMATE DEHYDROGENASE FROM HIGHER-PLANT TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAD-DEPENDENT FORMATE DEHYDROGENASE, FDH; COMPND 5 EC: 1.2.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT5G14780, FDH, FDH1, T9L3_80; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P1ARAFDH KEYWDS NAD-DEPENDENT FORMATE DEHYDROGANASE, HOMODIMER, APO-FORM, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,K.M.POLYAKOV,A.E.SEROV,O.E.SKIRGELLO,E.G.SADYKHOV, AUTHOR 2 P.V.DOROVATOVSKIY,V.I.TISHKOV,V.O.POPOV REVDAT 2 21-FEB-24 3NAQ 1 REMARK REVDAT 1 07-JUL-10 3NAQ 0 JRNL AUTH I.G.SHABALIN,K.M.POLYAKOV,O.E.SKIRGELLO,V.I.TISHKOV, JRNL AUTH 2 V.O.POPOV JRNL TITL STRUCTURES OF THE APO AND HOLO FORMS OF NAD-DEPENDENT JRNL TITL 2 FORMATE DEHYDROGENASE FROM THE HIGHER-PLANT ARABIDOPSIS JRNL TITL 3 THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 83414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 559 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.05000 REMARK 3 B22 (A**2) : 1.90000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5580 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3730 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7568 ; 1.589 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9132 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.314 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;32.784 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 954 ;13.925 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 836 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6202 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1070 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3484 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1428 ; 0.304 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5603 ; 1.470 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2096 ; 2.418 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 3.731 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9090 -1.0580 6.0160 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.0331 REMARK 3 T33: 0.0923 T12: -0.0015 REMARK 3 T13: 0.0084 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.2544 L22: 1.5525 REMARK 3 L33: 1.1155 L12: -0.3913 REMARK 3 L13: -0.3116 L23: 0.8665 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.0751 S13: 0.1612 REMARK 3 S21: -0.1701 S22: 0.0278 S23: -0.0255 REMARK 3 S31: -0.1064 S32: 0.0175 S33: -0.0590 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6300 -2.1510 11.7430 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.2170 REMARK 3 T33: 0.1207 T12: -0.0473 REMARK 3 T13: 0.0401 T23: -0.1358 REMARK 3 L TENSOR REMARK 3 L11: 4.9173 L22: 1.0893 REMARK 3 L33: 0.8801 L12: -0.3562 REMARK 3 L13: -0.4350 L23: 0.0505 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: 0.9378 S13: -0.4710 REMARK 3 S21: -0.0929 S22: 0.0319 S23: 0.0297 REMARK 3 S31: 0.1310 S32: -0.1506 S33: 0.1637 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 333 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4790 -10.6820 14.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.2083 T22: 0.0681 REMARK 3 T33: 0.1356 T12: -0.0061 REMARK 3 T13: 0.0066 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.3096 L22: 1.2234 REMARK 3 L33: 0.9854 L12: -0.0475 REMARK 3 L13: -0.1988 L23: 0.2913 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.1700 S13: -0.0695 REMARK 3 S21: 0.0294 S22: 0.0367 S23: -0.0035 REMARK 3 S31: 0.1575 S32: -0.0210 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3150 20.5650 27.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.0465 REMARK 3 T33: 0.0755 T12: 0.0071 REMARK 3 T13: -0.0006 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2227 L22: 1.2871 REMARK 3 L33: 1.6217 L12: -0.3087 REMARK 3 L13: -0.3362 L23: 0.9428 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.1552 S13: 0.0719 REMARK 3 S21: -0.1235 S22: -0.0529 S23: 0.0053 REMARK 3 S31: -0.1851 S32: -0.0117 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 146 B 332 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8760 14.8040 28.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.0806 REMARK 3 T33: 0.2687 T12: 0.0395 REMARK 3 T13: -0.0477 T23: -0.1369 REMARK 3 L TENSOR REMARK 3 L11: 4.8378 L22: 0.8267 REMARK 3 L33: 1.1733 L12: -0.5239 REMARK 3 L13: -0.3311 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.1939 S12: -0.4831 S13: 0.9408 REMARK 3 S21: 0.1185 S22: 0.1535 S23: -0.1429 REMARK 3 S31: -0.0959 S32: 0.0301 S33: 0.0403 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 333 B 378 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8920 12.1910 37.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.0750 REMARK 3 T33: 0.1040 T12: 0.0071 REMARK 3 T13: -0.0094 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.6831 L22: 1.0569 REMARK 3 L33: 1.2739 L12: -0.2229 REMARK 3 L13: -0.2380 L23: 0.3429 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0629 S13: -0.1934 REMARK 3 S21: 0.1736 S22: 0.0090 S23: -0.0424 REMARK 3 S31: 0.0309 S32: 0.0009 S33: 0.0178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 75.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (2UL): 6 MG/ML FDH, REMARK 280 0.1M NA2HPO4, PH 7.0, 10 MM EDTA. RESERVOIR SOLUTION (2UL): 0.1M REMARK 280 BIS-TRIS, PH 6.0, 2.1M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.16500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.16500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 22 REMARK 465 ASN A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 PHE B 22 REMARK 465 ASN B 23 REMARK 465 ALA B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 GLY B 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 LYS A 231 CD CE NZ REMARK 470 LYS A 236 CE NZ REMARK 470 ASN A 242 OD1 ND2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 260 CD CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 LYS B 231 CD CE NZ REMARK 470 LYS B 236 CE NZ REMARK 470 ASN B 242 OD1 ND2 REMARK 470 LYS B 247 CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 LYS B 260 CG CD CE NZ REMARK 470 LYS B 267 CD CE NZ REMARK 470 GLU B 268 CD OE1 OE2 REMARK 470 LYS B 272 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 -127.49 52.24 REMARK 500 HIS A 99 66.23 -162.20 REMARK 500 ALA A 199 53.96 -149.07 REMARK 500 ASN A 254 46.70 -140.62 REMARK 500 ALA A 283 -83.91 -94.87 REMARK 500 ASN B 40 -128.69 51.49 REMARK 500 HIS B 99 65.44 -159.68 REMARK 500 ALA B 199 55.79 -148.11 REMARK 500 ASN B 254 44.17 -140.95 REMARK 500 ALA B 283 -82.64 -96.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 19 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N7U RELATED DB: PDB REMARK 900 FDH FROM ARABIDOPSIS THALIANA IN HOLO-FORM REMARK 900 RELATED ID: 2GSD RELATED DB: PDB REMARK 900 FDH FROM MORAXELLA SP.C-1 IN HOLO-FORM REMARK 900 RELATED ID: 3FN4 RELATED DB: PDB REMARK 900 FDH FROM MORAXELLA SP.C-1 IN APO-FORM IN CLOSED CONFORMATION REMARK 900 RELATED ID: 2NAD RELATED DB: PDB REMARK 900 FDH FROM PSEUDOMONAS SP.101 IN HOLO-FORM REMARK 900 RELATED ID: 2NAC RELATED DB: PDB REMARK 900 FDH FROM PSEUDOMONAS SP.101 IN APO-FORM REMARK 900 RELATED ID: 2FSS RELATED DB: PDB REMARK 900 FDH FROM CANDIDA BOIDINII IN APO-FORM DBREF 3NAQ A 22 378 UNP Q9S7E4 FDH_ARATH 28 384 DBREF 3NAQ B 22 378 UNP Q9S7E4 FDH_ARATH 28 384 SEQRES 1 A 357 PHE ASN ALA SER SER GLY ASP SER LYS LYS ILE VAL GLY SEQRES 2 A 357 VAL PHE TYR LYS ALA ASN GLU TYR ALA THR LYS ASN PRO SEQRES 3 A 357 ASN PHE LEU GLY CYS VAL GLU ASN ALA LEU GLY ILE ARG SEQRES 4 A 357 ASP TRP LEU GLU SER GLN GLY HIS GLN TYR ILE VAL THR SEQRES 5 A 357 ASP ASP LYS GLU GLY PRO ASP CYS GLU LEU GLU LYS HIS SEQRES 6 A 357 ILE PRO ASP LEU HIS VAL LEU ILE SER THR PRO PHE HIS SEQRES 7 A 357 PRO ALA TYR VAL THR ALA GLU ARG ILE LYS LYS ALA LYS SEQRES 8 A 357 ASN LEU LYS LEU LEU LEU THR ALA GLY ILE GLY SER ASP SEQRES 9 A 357 HIS ILE ASP LEU GLN ALA ALA ALA ALA ALA GLY LEU THR SEQRES 10 A 357 VAL ALA GLU VAL THR GLY SER ASN VAL VAL SER VAL ALA SEQRES 11 A 357 GLU ASP GLU LEU MET ARG ILE LEU ILE LEU MET ARG ASN SEQRES 12 A 357 PHE VAL PRO GLY TYR ASN GLN VAL VAL LYS GLY GLU TRP SEQRES 13 A 357 ASN VAL ALA GLY ILE ALA TYR ARG ALA TYR ASP LEU GLU SEQRES 14 A 357 GLY LYS THR ILE GLY THR VAL GLY ALA GLY ARG ILE GLY SEQRES 15 A 357 LYS LEU LEU LEU GLN ARG LEU LYS PRO PHE GLY CYS ASN SEQRES 16 A 357 LEU LEU TYR HIS ASP ARG LEU GLN MET ALA PRO GLU LEU SEQRES 17 A 357 GLU LYS GLU THR GLY ALA LYS PHE VAL GLU ASP LEU ASN SEQRES 18 A 357 GLU MET LEU PRO LYS CYS ASP VAL ILE VAL ILE ASN MET SEQRES 19 A 357 PRO LEU THR GLU LYS THR ARG GLY MET PHE ASN LYS GLU SEQRES 20 A 357 LEU ILE GLY LYS LEU LYS LYS GLY VAL LEU ILE VAL ASN SEQRES 21 A 357 ASN ALA ARG GLY ALA ILE MET GLU ARG GLN ALA VAL VAL SEQRES 22 A 357 ASP ALA VAL GLU SER GLY HIS ILE GLY GLY TYR SER GLY SEQRES 23 A 357 ASP VAL TRP ASP PRO GLN PRO ALA PRO LYS ASP HIS PRO SEQRES 24 A 357 TRP ARG TYR MET PRO ASN GLN ALA MET THR PRO HIS THR SEQRES 25 A 357 SER GLY THR THR ILE ASP ALA GLN LEU ARG TYR ALA ALA SEQRES 26 A 357 GLY THR LYS ASP MET LEU GLU ARG TYR PHE LYS GLY GLU SEQRES 27 A 357 ASP PHE PRO THR GLU ASN TYR ILE VAL LYS ASP GLY GLU SEQRES 28 A 357 LEU ALA PRO GLN TYR ARG SEQRES 1 B 357 PHE ASN ALA SER SER GLY ASP SER LYS LYS ILE VAL GLY SEQRES 2 B 357 VAL PHE TYR LYS ALA ASN GLU TYR ALA THR LYS ASN PRO SEQRES 3 B 357 ASN PHE LEU GLY CYS VAL GLU ASN ALA LEU GLY ILE ARG SEQRES 4 B 357 ASP TRP LEU GLU SER GLN GLY HIS GLN TYR ILE VAL THR SEQRES 5 B 357 ASP ASP LYS GLU GLY PRO ASP CYS GLU LEU GLU LYS HIS SEQRES 6 B 357 ILE PRO ASP LEU HIS VAL LEU ILE SER THR PRO PHE HIS SEQRES 7 B 357 PRO ALA TYR VAL THR ALA GLU ARG ILE LYS LYS ALA LYS SEQRES 8 B 357 ASN LEU LYS LEU LEU LEU THR ALA GLY ILE GLY SER ASP SEQRES 9 B 357 HIS ILE ASP LEU GLN ALA ALA ALA ALA ALA GLY LEU THR SEQRES 10 B 357 VAL ALA GLU VAL THR GLY SER ASN VAL VAL SER VAL ALA SEQRES 11 B 357 GLU ASP GLU LEU MET ARG ILE LEU ILE LEU MET ARG ASN SEQRES 12 B 357 PHE VAL PRO GLY TYR ASN GLN VAL VAL LYS GLY GLU TRP SEQRES 13 B 357 ASN VAL ALA GLY ILE ALA TYR ARG ALA TYR ASP LEU GLU SEQRES 14 B 357 GLY LYS THR ILE GLY THR VAL GLY ALA GLY ARG ILE GLY SEQRES 15 B 357 LYS LEU LEU LEU GLN ARG LEU LYS PRO PHE GLY CYS ASN SEQRES 16 B 357 LEU LEU TYR HIS ASP ARG LEU GLN MET ALA PRO GLU LEU SEQRES 17 B 357 GLU LYS GLU THR GLY ALA LYS PHE VAL GLU ASP LEU ASN SEQRES 18 B 357 GLU MET LEU PRO LYS CYS ASP VAL ILE VAL ILE ASN MET SEQRES 19 B 357 PRO LEU THR GLU LYS THR ARG GLY MET PHE ASN LYS GLU SEQRES 20 B 357 LEU ILE GLY LYS LEU LYS LYS GLY VAL LEU ILE VAL ASN SEQRES 21 B 357 ASN ALA ARG GLY ALA ILE MET GLU ARG GLN ALA VAL VAL SEQRES 22 B 357 ASP ALA VAL GLU SER GLY HIS ILE GLY GLY TYR SER GLY SEQRES 23 B 357 ASP VAL TRP ASP PRO GLN PRO ALA PRO LYS ASP HIS PRO SEQRES 24 B 357 TRP ARG TYR MET PRO ASN GLN ALA MET THR PRO HIS THR SEQRES 25 B 357 SER GLY THR THR ILE ASP ALA GLN LEU ARG TYR ALA ALA SEQRES 26 B 357 GLY THR LYS ASP MET LEU GLU ARG TYR PHE LYS GLY GLU SEQRES 27 B 357 ASP PHE PRO THR GLU ASN TYR ILE VAL LYS ASP GLY GLU SEQRES 28 B 357 LEU ALA PRO GLN TYR ARG HET SO4 A 1 5 HET SO4 A 18 5 HET SO4 A 20 5 HET SO4 B 2 5 HET SO4 B 3 5 HET SO4 B 19 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *559(H2 O) HELIX 1 1 ASN A 40 ASN A 46 1 7 HELIX 2 2 ASN A 55 GLY A 58 5 4 HELIX 3 3 ILE A 59 GLN A 66 1 8 HELIX 4 4 CYS A 81 ILE A 87 1 7 HELIX 5 5 THR A 104 ALA A 111 1 8 HELIX 6 6 ASP A 128 ALA A 135 1 8 HELIX 7 7 ASN A 146 ASN A 164 1 19 HELIX 8 8 ASN A 164 GLY A 175 1 12 HELIX 9 9 VAL A 179 TYR A 184 1 6 HELIX 10 10 GLY A 200 LYS A 211 1 12 HELIX 11 11 PRO A 212 GLY A 214 5 3 HELIX 12 12 ALA A 226 GLY A 234 1 9 HELIX 13 13 ASP A 240 LEU A 245 1 6 HELIX 14 14 PRO A 246 CYS A 248 5 3 HELIX 15 15 ASN A 266 LEU A 273 1 8 HELIX 16 16 ARG A 284 MET A 288 5 5 HELIX 17 17 GLU A 289 SER A 299 1 11 HELIX 18 18 HIS A 319 TYR A 323 5 5 HELIX 19 19 THR A 337 GLY A 358 1 22 HELIX 20 20 PRO A 362 GLU A 364 5 3 HELIX 21 21 PRO A 375 ARG A 378 5 4 HELIX 22 22 ASN B 40 ASN B 46 1 7 HELIX 23 23 ASN B 55 GLY B 58 5 4 HELIX 24 24 ILE B 59 GLN B 66 1 8 HELIX 25 25 CYS B 81 ILE B 87 1 7 HELIX 26 26 THR B 104 ALA B 111 1 8 HELIX 27 27 ASP B 128 ALA B 135 1 8 HELIX 28 28 ASN B 146 ASN B 164 1 19 HELIX 29 29 ASN B 164 GLY B 175 1 12 HELIX 30 30 VAL B 179 TYR B 184 1 6 HELIX 31 31 GLY B 200 LYS B 211 1 12 HELIX 32 32 PRO B 212 GLY B 214 5 3 HELIX 33 33 ALA B 226 GLY B 234 1 9 HELIX 34 34 ASP B 240 LEU B 245 1 6 HELIX 35 35 PRO B 246 CYS B 248 5 3 HELIX 36 36 ASN B 266 LEU B 273 1 8 HELIX 37 37 ARG B 284 MET B 288 5 5 HELIX 38 38 GLU B 289 SER B 299 1 11 HELIX 39 39 HIS B 319 TYR B 323 5 5 HELIX 40 40 THR B 337 GLY B 358 1 22 HELIX 41 41 PRO B 362 GLU B 364 5 3 HELIX 42 42 PRO B 375 ARG B 378 5 4 SHEET 1 A 7 GLN A 69 THR A 73 0 SHEET 2 A 7 LYS A 31 VAL A 35 1 N ILE A 32 O GLN A 69 SHEET 3 A 7 VAL A 92 SER A 95 1 O ILE A 94 N VAL A 35 SHEET 4 A 7 LEU A 116 THR A 119 1 O LEU A 116 N LEU A 93 SHEET 5 A 7 THR A 138 GLU A 141 1 O THR A 138 N LEU A 117 SHEET 6 A 7 TYR A 366 LYS A 369 -1 O ILE A 367 N VAL A 139 SHEET 7 A 7 GLU A 372 LEU A 373 -1 O GLU A 372 N LYS A 369 SHEET 1 B 6 LYS A 236 PHE A 237 0 SHEET 2 B 6 ASN A 216 HIS A 220 1 N LEU A 217 O LYS A 236 SHEET 3 B 6 THR A 193 VAL A 197 1 N ILE A 194 O LEU A 218 SHEET 4 B 6 VAL A 250 ILE A 253 1 O VAL A 252 N VAL A 197 SHEET 5 B 6 VAL A 277 ASN A 281 1 O LEU A 278 N ILE A 251 SHEET 6 B 6 ILE A 302 GLY A 307 1 O SER A 306 N ASN A 281 SHEET 1 C 7 GLN B 69 THR B 73 0 SHEET 2 C 7 LYS B 31 VAL B 35 1 N ILE B 32 O GLN B 69 SHEET 3 C 7 VAL B 92 SER B 95 1 O ILE B 94 N VAL B 33 SHEET 4 C 7 LEU B 116 THR B 119 1 O LEU B 116 N LEU B 93 SHEET 5 C 7 THR B 138 GLU B 141 1 O THR B 138 N LEU B 117 SHEET 6 C 7 TYR B 366 LYS B 369 -1 O ILE B 367 N VAL B 139 SHEET 7 C 7 GLU B 372 LEU B 373 -1 O GLU B 372 N LYS B 369 SHEET 1 D 6 LYS B 236 PHE B 237 0 SHEET 2 D 6 ASN B 216 HIS B 220 1 N LEU B 217 O LYS B 236 SHEET 3 D 6 THR B 193 VAL B 197 1 N ILE B 194 O LEU B 218 SHEET 4 D 6 VAL B 250 ILE B 253 1 O VAL B 252 N VAL B 197 SHEET 5 D 6 VAL B 277 ASN B 281 1 O LEU B 278 N ILE B 251 SHEET 6 D 6 ILE B 302 GLY B 307 1 O GLY B 304 N ILE B 279 CISPEP 1 ASP A 311 PRO A 312 0 -5.67 CISPEP 2 GLN A 313 PRO A 314 0 -4.50 CISPEP 3 ASP B 311 PRO B 312 0 -1.77 CISPEP 4 GLN B 313 PRO B 314 0 -2.98 SITE 1 AC1 4 ARG A 354 PRO A 362 HOH A 396 HOH A 479 SITE 1 AC2 4 GLU A 359 ASP A 360 HOH A 418 HOH A 581 SITE 1 AC3 3 TYR A 184 ARG A 185 LYS B 45 SITE 1 AC4 3 ARG B 354 HOH B 432 HOH B 549 SITE 1 AC5 3 GLU B 359 ASP B 360 HOH B 455 SITE 1 AC6 4 TYR B 184 ARG B 185 ASN B 326 HOH B 558 CRYST1 70.330 106.230 106.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000