HEADER HYDROLASE 03-JUN-10 3NBF TITLE Q28E MUTANT OF HERA HELICASE N-TERMINAL DOMAIN BOUND TO 8-OXO-ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS RNA HELICASE, RIBOSOME BIOGENESIS, ATP HYDROLYSIS, BASE SPECIFICITY, KEYWDS 2 THERMOSTABILITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 3 01-NOV-23 3NBF 1 REMARK SEQADV REVDAT 2 08-NOV-17 3NBF 1 REMARK REVDAT 1 23-MAR-11 3NBF 0 JRNL AUTH J.STROHMEIER,I.HERTEL,U.DIEDERICHSEN,M.G.RUDOLPH, JRNL AUTH 2 D.KLOSTERMEIER JRNL TITL CHANGING NUCLEOTIDE SPECIFICITY OF THE DEAD-BOX HELICASE JRNL TITL 2 HERA ABROGATES COMMUNICATION BETWEEN THE Q-MOTIF AND THE JRNL TITL 3 P-LOOP. JRNL REF BIOL.CHEM. V. 392 357 2011 JRNL REFN ISSN 1431-6730 JRNL PMID 21391900 JRNL DOI 10.1515/BC.2011.034 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 64866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5216 - 5.3996 0.97 2946 153 0.1527 0.1879 REMARK 3 2 5.3996 - 4.2872 0.95 2886 161 0.1210 0.1281 REMARK 3 3 4.2872 - 3.7457 0.96 2913 165 0.1329 0.1635 REMARK 3 4 3.7457 - 3.4034 0.96 2899 164 0.1644 0.2174 REMARK 3 5 3.4034 - 3.1596 0.95 2906 154 0.1883 0.2378 REMARK 3 6 3.1596 - 2.9733 0.95 2879 140 0.2107 0.2574 REMARK 3 7 2.9733 - 2.8245 0.95 2899 167 0.2144 0.2243 REMARK 3 8 2.8245 - 2.7015 0.95 2868 153 0.2039 0.2589 REMARK 3 9 2.7015 - 2.5976 0.95 2883 161 0.2012 0.2668 REMARK 3 10 2.5976 - 2.5079 0.93 2822 140 0.1956 0.2803 REMARK 3 11 2.5079 - 2.4295 0.92 2785 138 0.1991 0.2581 REMARK 3 12 2.4295 - 2.3601 0.91 2764 140 0.1988 0.2629 REMARK 3 13 2.3601 - 2.2980 0.90 2764 125 0.1935 0.2414 REMARK 3 14 2.2980 - 2.2419 0.89 2648 148 0.2017 0.2551 REMARK 3 15 2.2419 - 2.1909 0.87 2660 134 0.2032 0.2568 REMARK 3 16 2.1909 - 2.1443 0.85 2596 134 0.2212 0.2727 REMARK 3 17 2.1443 - 2.1014 0.84 2558 119 0.2300 0.2997 REMARK 3 18 2.1014 - 2.0618 0.81 2468 134 0.2564 0.3445 REMARK 3 19 2.0618 - 2.0249 0.78 2315 132 0.2672 0.2887 REMARK 3 20 2.0249 - 1.9906 0.75 2298 127 0.2922 0.3693 REMARK 3 21 1.9906 - 1.9585 0.76 2282 115 0.2862 0.3582 REMARK 3 22 1.9585 - 1.9284 0.72 2219 113 0.3075 0.3261 REMARK 3 23 1.9284 - 1.9000 0.79 2377 114 0.3254 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 38.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.77020 REMARK 3 B22 (A**2) : -4.51600 REMARK 3 B33 (A**2) : 0.74580 REMARK 3 B12 (A**2) : -0.93550 REMARK 3 B13 (A**2) : 4.66310 REMARK 3 B23 (A**2) : 5.71910 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6619 REMARK 3 ANGLE : 1.092 9048 REMARK 3 CHIRALITY : 0.070 1083 REMARK 3 PLANARITY : 0.006 1128 REMARK 3 DIHEDRAL : 17.103 2458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -42.2020 6.1468 -16.9869 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.2310 REMARK 3 T33: 0.2285 T12: 0.0127 REMARK 3 T13: 0.0004 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0247 L22: 1.6142 REMARK 3 L33: 0.8748 L12: 0.0328 REMARK 3 L13: 0.1219 L23: 0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.0079 S13: 0.0392 REMARK 3 S21: 0.1320 S22: -0.0435 S23: 0.2398 REMARK 3 S31: -0.0564 S32: -0.1615 S33: 0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -8.3424 -8.7851 -21.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.2452 REMARK 3 T33: 0.1951 T12: 0.0742 REMARK 3 T13: -0.0005 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.2126 L22: 0.2691 REMARK 3 L33: 0.0818 L12: 0.4683 REMARK 3 L13: -0.0899 L23: -0.3659 REMARK 3 S TENSOR REMARK 3 S11: -0.2144 S12: -0.3091 S13: -0.0517 REMARK 3 S21: -0.0797 S22: 0.1630 S23: -0.1759 REMARK 3 S31: 0.0811 S32: 0.0147 S33: 0.0403 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -34.6787 -27.0130 -41.7483 REMARK 3 T TENSOR REMARK 3 T11: 0.2997 T22: 0.1900 REMARK 3 T33: 0.1696 T12: -0.0418 REMARK 3 T13: 0.0291 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.1821 L22: 2.1488 REMARK 3 L33: 1.7919 L12: 0.4547 REMARK 3 L13: 0.1570 L23: -1.3059 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.1082 S13: -0.0659 REMARK 3 S21: -0.0633 S22: -0.0079 S23: -0.1124 REMARK 3 S31: -0.3234 S32: 0.1153 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -30.6368 6.9764 -56.8436 REMARK 3 T TENSOR REMARK 3 T11: 0.5487 T22: 0.2282 REMARK 3 T33: 0.1895 T12: -0.0510 REMARK 3 T13: -0.0265 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.7763 L22: 1.1232 REMARK 3 L33: 1.5278 L12: 0.2847 REMARK 3 L13: -0.4035 L23: -0.7611 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: 0.0781 S13: -0.0093 REMARK 3 S21: -0.0861 S22: -0.0066 S23: 0.0134 REMARK 3 S31: 0.6731 S32: 0.0061 S33: 0.0617 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70329 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59200 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.2M SODIUM CITRATE, REMARK 280 0.1M HEPES/NAOH PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ARG D 46 REMARK 465 THR D 47 REMARK 465 GLY D 48 REMARK 465 THR D 49 REMARK 465 LYS D 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 207 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1P 8OP C 501 O HOH C 244 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 152 63.02 66.68 REMARK 500 PRO C 7 82.08 -65.77 REMARK 500 LYS C 51 -2.91 -144.14 REMARK 500 GLU C 152 64.03 65.54 REMARK 500 LYS D 51 21.27 -143.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OD B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OP C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OP C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OD C 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OP D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8OD D 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MWJ RELATED DB: PDB REMARK 900 RELATED ID: 3MWK RELATED DB: PDB REMARK 900 RELATED ID: 3MWL RELATED DB: PDB DBREF 3NBF A 1 207 UNP Q72GF3 Q72GF3_THET2 8 214 DBREF 3NBF B 1 207 UNP Q72GF3 Q72GF3_THET2 8 214 DBREF 3NBF C 1 207 UNP Q72GF3 Q72GF3_THET2 8 214 DBREF 3NBF D 1 207 UNP Q72GF3 Q72GF3_THET2 8 214 SEQADV 3NBF GLU A 28 UNP Q72GF3 GLN 35 ENGINEERED MUTATION SEQADV 3NBF GLU B 28 UNP Q72GF3 GLN 35 ENGINEERED MUTATION SEQADV 3NBF GLU C 28 UNP Q72GF3 GLN 35 ENGINEERED MUTATION SEQADV 3NBF GLU D 28 UNP Q72GF3 GLN 35 ENGINEERED MUTATION SEQRES 1 A 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 A 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 A 207 ILE GLU ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 A 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 A 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 A 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 A 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 A 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 A 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 A 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 A 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 A 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 A 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 A 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 A 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 A 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS SEQRES 1 B 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 B 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 B 207 ILE GLU ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 B 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 B 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 B 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 B 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 B 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 B 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 B 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 B 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 B 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 B 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 B 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 B 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 B 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS SEQRES 1 C 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 C 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 C 207 ILE GLU ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 C 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 C 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 C 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 C 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 C 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 C 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 C 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 C 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 C 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 C 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 C 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 C 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 C 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS SEQRES 1 D 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 D 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 D 207 ILE GLU ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 D 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 D 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 D 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 D 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 D 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 D 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 D 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 D 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 D 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 D 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 D 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 D 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 D 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS HET 8OD A 500 28 HET 8OD A 600 28 HET 8OD B 500 28 HET 8OD B 600 28 HET 8OP C 501 24 HET 8OP C 500 24 HET 8OD C 600 28 HET 8OP D 500 24 HET 8OD D 600 28 HETNAM 8OD [(2R,3S,4R,5R)-5-(6-AZANYL-8-OXO-7H-PURIN-9-YL)-3,4- HETNAM 2 8OD DIHYDROXY-OXOLAN-2-YL]METHYL PHOSPHONO HYDROGEN HETNAM 3 8OD PHOSPHATE HETNAM 8OP [(2R,3S,4R,5R)-5-(6-AZANYL-8-OXO-7H-PURIN-9-YL)-3,4- HETNAM 2 8OP DIHYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE FORMUL 5 8OD 6(C10 H15 N5 O11 P2) FORMUL 9 8OP 3(C10 H14 N5 O8 P) FORMUL 14 HOH *265(H2 O) HELIX 1 1 GLU A 2 PHE A 6 5 5 HELIX 2 2 LYS A 9 ARG A 19 1 11 HELIX 3 3 THR A 25 GLU A 37 1 13 HELIX 4 4 THR A 52 LEU A 63 1 12 HELIX 5 5 THR A 81 ALA A 96 1 16 HELIX 6 6 GLY A 109 GLY A 120 1 12 HELIX 7 7 THR A 127 GLN A 137 1 11 HELIX 8 8 GLU A 152 MET A 159 1 8 HELIX 9 9 PHE A 161 THR A 172 1 12 HELIX 10 10 PRO A 186 MET A 197 1 12 HELIX 11 11 GLU B 2 PHE B 6 5 5 HELIX 12 12 LYS B 9 ARG B 19 1 11 HELIX 13 13 THR B 25 GLU B 37 1 13 HELIX 14 14 THR B 52 LEU B 63 1 12 HELIX 15 15 THR B 81 ALA B 96 1 16 HELIX 16 16 GLY B 109 GLY B 120 1 12 HELIX 17 17 THR B 127 GLN B 137 1 11 HELIX 18 18 GLU B 152 MET B 159 1 8 HELIX 19 19 PHE B 161 ALA B 171 1 11 HELIX 20 20 PRO B 186 MET B 197 1 12 HELIX 21 21 GLU C 2 PHE C 6 5 5 HELIX 22 22 LYS C 9 GLY C 18 1 10 HELIX 23 23 THR C 25 GLU C 37 1 13 HELIX 24 24 THR C 52 LEU C 63 1 12 HELIX 25 25 THR C 81 ALA C 96 1 16 HELIX 26 26 TYR C 110 GLY C 120 1 11 HELIX 27 27 THR C 127 GLN C 137 1 11 HELIX 28 28 GLU C 152 MET C 159 1 8 HELIX 29 29 PHE C 161 ALA C 171 1 11 HELIX 30 30 PRO C 186 TYR C 196 1 11 HELIX 31 31 GLU D 2 PHE D 6 5 5 HELIX 32 32 LYS D 9 GLY D 18 1 10 HELIX 33 33 THR D 25 GLU D 37 1 13 HELIX 34 34 THR D 52 LEU D 63 1 12 HELIX 35 35 THR D 81 ALA D 96 1 16 HELIX 36 36 TYR D 110 GLY D 120 1 11 HELIX 37 37 THR D 127 GLN D 137 1 11 HELIX 38 38 GLU D 152 MET D 159 1 8 HELIX 39 39 PHE D 161 THR D 172 1 12 HELIX 40 40 PRO D 186 MET D 197 1 12 SHEET 1 A14 VAL A 101 VAL A 104 0 SHEET 2 A14 ALA A 123 ALA A 126 1 O VAL A 125 N VAL A 104 SHEET 3 A14 ALA A 75 LEU A 78 1 N VAL A 77 O ALA A 126 SHEET 4 A14 VAL A 147 ASP A 151 1 O ASP A 151 N LEU A 78 SHEET 5 A14 GLN A 177 PHE A 181 1 O PHE A 181 N LEU A 150 SHEET 6 A14 LEU A 41 GLN A 44 1 N GLY A 43 O LEU A 180 SHEET 7 A14 VAL A 201 ASN A 204 1 O ILE A 203 N ILE A 42 SHEET 8 A14 VAL B 201 VAL B 205 -1 O ASN B 204 N LEU A 202 SHEET 9 A14 LEU B 41 GLN B 44 1 N ILE B 42 O ILE B 203 SHEET 10 A14 GLN B 177 PHE B 181 1 O LEU B 180 N GLY B 43 SHEET 11 A14 VAL B 147 ASP B 151 1 N ALA B 148 O GLN B 177 SHEET 12 A14 ALA B 75 LEU B 78 1 N LEU B 78 O ASP B 151 SHEET 13 A14 ALA B 123 ALA B 126 1 O VAL B 124 N VAL B 77 SHEET 14 A14 VAL B 101 VAL B 104 1 N VAL B 104 O VAL B 125 SHEET 1 B14 VAL C 101 VAL C 104 0 SHEET 2 B14 ALA C 123 ALA C 126 1 O VAL C 125 N VAL C 104 SHEET 3 B14 ALA C 75 LEU C 78 1 N VAL C 77 O VAL C 124 SHEET 4 B14 VAL C 147 ASP C 151 1 O VAL C 149 N LEU C 78 SHEET 5 B14 GLN C 177 PHE C 181 1 O PHE C 181 N LEU C 150 SHEET 6 B14 LEU C 41 GLN C 44 1 N LEU C 41 O LEU C 180 SHEET 7 B14 VAL C 201 ASN C 204 1 O ILE C 203 N GLN C 44 SHEET 8 B14 VAL D 201 VAL D 205 -1 O ASN D 204 N LEU C 202 SHEET 9 B14 LEU D 41 GLN D 44 1 N GLN D 44 O ILE D 203 SHEET 10 B14 GLN D 177 PHE D 181 1 O LEU D 180 N GLY D 43 SHEET 11 B14 VAL D 147 LEU D 150 1 N ALA D 148 O GLN D 177 SHEET 12 B14 ALA D 75 LEU D 78 1 N LEU D 76 O VAL D 149 SHEET 13 B14 ALA D 123 ALA D 126 1 O ALA D 126 N VAL D 77 SHEET 14 B14 VAL D 101 VAL D 104 1 N VAL D 104 O VAL D 125 SITE 1 AC1 17 PHE A 3 LEU A 21 THR A 23 PRO A 24 SITE 2 AC1 17 GLU A 28 THR A 49 GLY A 50 LYS A 51 SITE 3 AC1 17 THR A 52 GLU A 91 HOH A 212 HOH A 272 SITE 4 AC1 17 HOH A 282 THR B 108 GLY B 109 LYS B 112 SITE 5 AC1 17 ARG C 191 SITE 1 AC2 11 PRO A 80 THR A 81 ARG A 82 GLU A 83 SITE 2 AC2 11 GLY A 106 THR A 127 GLY A 129 ARG A 130 SITE 3 AC2 11 PHE A 161 HOH A 235 8OD B 600 SITE 1 AC3 17 THR A 108 LEU B 21 THR B 23 PRO B 24 SITE 2 AC3 17 THR B 25 GLU B 28 THR B 47 GLY B 48 SITE 3 AC3 17 THR B 49 GLY B 50 LYS B 51 THR B 52 SITE 4 AC3 17 GLU B 91 HOH B 228 HOH B 237 HOH B 248 SITE 5 AC3 17 HOH B 249 SITE 1 AC4 11 ARG A 82 8OD A 600 THR B 81 ARG B 82 SITE 2 AC4 11 GLU B 83 GLY B 106 THR B 127 GLY B 129 SITE 3 AC4 11 ARG B 130 PHE B 161 HOH B 226 SITE 1 AC5 15 LYS A 190 GLU A 194 GLN B 44 ASN B 204 SITE 2 AC5 15 ILE B 206 HOH B 208 TYR C 110 GLY C 111 SITE 3 AC5 15 LYS C 114 GLN C 137 HOH C 211 HOH C 226 SITE 4 AC5 15 HOH C 230 HOH C 244 HOH C 277 SITE 1 AC6 12 LEU C 21 THR C 23 THR C 25 GLU C 28 SITE 2 AC6 12 GLY C 48 THR C 49 GLY C 50 LYS C 51 SITE 3 AC6 12 THR C 52 LEU C 53 GLU C 91 LYS D 112 SITE 1 AC7 18 ARG A 195 HOH A 226 PRO C 80 THR C 81 SITE 2 AC7 18 ARG C 82 GLU C 83 GLY C 106 THR C 127 SITE 3 AC7 18 GLY C 129 ARG C 130 MET C 159 PHE C 161 SITE 4 AC7 18 HOH C 210 HOH C 214 HOH C 254 HOH C 255 SITE 5 AC7 18 ARG D 82 8OD D 600 SITE 1 AC8 10 PHE D 3 LEU D 21 THR D 23 PRO D 24 SITE 2 AC8 10 THR D 25 GLU D 28 GLY D 50 LYS D 51 SITE 3 AC8 10 THR D 52 GLU D 91 SITE 1 AC9 15 ARG C 82 8OD C 600 THR D 81 ARG D 82 SITE 2 AC9 15 GLU D 83 GLY D 106 THR D 127 GLY D 129 SITE 3 AC9 15 ARG D 130 MET D 159 PHE D 161 HOH D 217 SITE 4 AC9 15 HOH D 240 HOH D 245 HOH D 248 CRYST1 60.648 60.676 74.085 68.90 77.29 72.64 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016489 -0.005155 -0.002202 0.00000 SCALE2 0.000000 0.017268 -0.005754 0.00000 SCALE3 0.000000 0.000000 0.014585 0.00000