HEADER HYDROLASE 05-JUN-10 3NCO TITLE CRYSTAL STRUCTURE OF FNCEL5A FROM F. NODOSUM RT17-B1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE FNCEL5A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE (ALA)(ASN)(GLU); COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PEPTIDE (ALA)(ASP)(GLN); COMPND 12 CHAIN: E; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FERVIDOBACTERIUM NODOSUM; SOURCE 3 ORGANISM_TAXID: 381764; SOURCE 4 STRAIN: RT17-B1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS FNCEL5A, F. NODOSUM RT17-B1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.ZHENG,W.YANG,Y.WANG,Z.Y.LOU,Z.H.RAO,Y.FENG REVDAT 1 22-JUN-11 3NCO 0 JRNL AUTH B.S.ZHENG,Z.H.RAO JRNL TITL CRYSTAL STRUCTURE OF FNCEL5A FROM F. NODOSUM RT17-B1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 106721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.4110 REMARK 3 BIN FREE R VALUE SET COUNT : 375 REMARK 3 BIN FREE R VALUE : 0.4600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 866 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.803 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5455 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7410 ; 1.725 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 6.266 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;39.105 ;24.058 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 905 ;13.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4216 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2838 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3741 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 594 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3234 ; 1.148 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5119 ; 1.584 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2643 ; 2.940 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2291 ; 4.353 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7977 18.9448 1.2337 REMARK 3 T TENSOR REMARK 3 T11: -0.0339 T22: -0.0287 REMARK 3 T33: -0.0306 T12: 0.0023 REMARK 3 T13: -0.0016 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.7757 L22: 0.5292 REMARK 3 L33: 0.3780 L12: 0.1903 REMARK 3 L13: -0.0545 L23: -0.1031 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0893 S13: 0.0307 REMARK 3 S21: 0.0290 S22: 0.0067 S23: 0.0126 REMARK 3 S31: -0.0097 S32: 0.0019 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 320 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1044 -18.9189 1.2367 REMARK 3 T TENSOR REMARK 3 T11: -0.0270 T22: -0.0345 REMARK 3 T33: -0.0374 T12: 0.0027 REMARK 3 T13: 0.0015 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.8742 L22: 0.4795 REMARK 3 L33: 0.3622 L12: 0.1988 REMARK 3 L13: 0.0480 L23: 0.1051 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0670 S13: -0.0258 REMARK 3 S21: 0.0235 S22: 0.0063 S23: -0.0236 REMARK 3 S31: 0.0214 S32: -0.0036 S33: -0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NCO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798, 0.9795, 0.9600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121477 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.98300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.72150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.88450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.72150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.98300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.88450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 GLN B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 ASN B 7 REMARK 465 VAL B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 743 O HOH B 781 1.88 REMARK 500 OE1 GLU B 206 O HOH B 337 2.00 REMARK 500 OE1 GLU A 294 O HOH A 678 2.00 REMARK 500 O HOH A 397 O HOH A 575 2.18 REMARK 500 O1 PO4 A 321 O HOH A 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 26 CG MSE A 26 SE 0.262 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 26 CB - CG - SE ANGL. DEV. = -20.4 DEGREES REMARK 500 MSE A 26 CG - SE - CE ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 PHE A 257 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 188 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 26 76.21 -104.07 REMARK 500 ALA A 29 -88.90 -119.80 REMARK 500 HIS A 67 41.96 -147.11 REMARK 500 GLU A 144 70.01 48.81 REMARK 500 GLN A 147 -126.76 61.97 REMARK 500 ALA A 297 -159.20 69.62 REMARK 500 ALA B 29 -91.36 -121.97 REMARK 500 PRO B 73 32.06 -90.78 REMARK 500 ASN B 101 -169.48 -127.74 REMARK 500 GLN B 147 -127.88 61.92 REMARK 500 ALA B 297 -157.31 77.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 8 ASP A 9 142.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ALA D 1 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 652 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 764 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 774 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 829 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A 835 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 848 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 850 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 869 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH B 474 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH B 518 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 701 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH B 713 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH B 740 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 755 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 778 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH B 831 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 842 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH B 843 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 855 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH B 863 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B 866 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 867 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH E 868 DISTANCE = 6.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 322 DBREF 3NCO A 1 320 UNP D4PEB3 D4PEB3_FERNB 1 320 DBREF 3NCO B 1 320 UNP D4PEB3 D4PEB3_FERNB 1 320 DBREF 3NCO D 1 3 PDB 3NCO 3NCO 1 3 DBREF 3NCO E 1 3 PDB 3NCO 3NCO 1 3 SEQRES 1 A 320 MSE ASP GLN SER VAL SER ASN VAL ASP LYS SER SER ALA SEQRES 2 A 320 PHE GLU TYR ASN LYS MSE ILE GLY HIS GLY ILE ASN MSE SEQRES 3 A 320 GLY ASN ALA LEU GLU ALA PRO VAL GLU GLY SER TRP GLY SEQRES 4 A 320 VAL TYR ILE GLU ASP GLU TYR PHE LYS ILE ILE LYS GLU SEQRES 5 A 320 ARG GLY PHE ASP SER VAL ARG ILE PRO ILE ARG TRP SER SEQRES 6 A 320 ALA HIS ILE SER GLU LYS TYR PRO TYR GLU ILE ASP LYS SEQRES 7 A 320 PHE PHE LEU ASP ARG VAL LYS HIS VAL VAL ASP VAL ALA SEQRES 8 A 320 LEU LYS ASN ASP LEU VAL VAL ILE ILE ASN CYS HIS HIS SEQRES 9 A 320 PHE GLU GLU LEU TYR GLN ALA PRO ASP LYS TYR GLY PRO SEQRES 10 A 320 VAL LEU VAL GLU ILE TRP LYS GLN VAL ALA GLN ALA PHE SEQRES 11 A 320 LYS ASP TYR PRO ASP LYS LEU PHE PHE GLU ILE PHE ASN SEQRES 12 A 320 GLU PRO ALA GLN ASN LEU THR PRO THR LYS TRP ASN GLU SEQRES 13 A 320 LEU TYR PRO LYS VAL LEU GLY GLU ILE ARG LYS THR ASN SEQRES 14 A 320 PRO SER ARG ILE VAL ILE ILE ASP VAL PRO ASN TRP SER SEQRES 15 A 320 ASN TYR SER TYR VAL ARG GLU LEU LYS LEU VAL ASP ASP SEQRES 16 A 320 LYS ASN ILE ILE VAL SER PHE HIS TYR TYR GLU PRO PHE SEQRES 17 A 320 ASN PHE THR HIS GLN GLY ALA GLU TRP VAL SER PRO THR SEQRES 18 A 320 LEU PRO ILE GLY VAL LYS TRP GLU GLY LYS ASP TRP GLU SEQRES 19 A 320 VAL GLU GLN ILE ARG ASN HIS PHE LYS TYR VAL SER GLU SEQRES 20 A 320 TRP ALA LYS LYS ASN ASN VAL PRO ILE PHE LEU GLY GLU SEQRES 21 A 320 PHE GLY ALA TYR SER LYS ALA ASP MSE GLU SER ARG VAL SEQRES 22 A 320 LYS TRP THR LYS THR VAL ARG ARG ILE ALA GLU GLU PHE SEQRES 23 A 320 GLY PHE SER LEU ALA TYR TRP GLU PHE CYS ALA GLY PHE SEQRES 24 A 320 GLY LEU TYR ASP ARG TRP THR LYS THR TRP ILE GLU PRO SEQRES 25 A 320 LEU THR THR SER ALA LEU GLY LYS SEQRES 1 B 320 MSE ASP GLN SER VAL SER ASN VAL ASP LYS SER SER ALA SEQRES 2 B 320 PHE GLU TYR ASN LYS MSE ILE GLY HIS GLY ILE ASN MSE SEQRES 3 B 320 GLY ASN ALA LEU GLU ALA PRO VAL GLU GLY SER TRP GLY SEQRES 4 B 320 VAL TYR ILE GLU ASP GLU TYR PHE LYS ILE ILE LYS GLU SEQRES 5 B 320 ARG GLY PHE ASP SER VAL ARG ILE PRO ILE ARG TRP SER SEQRES 6 B 320 ALA HIS ILE SER GLU LYS TYR PRO TYR GLU ILE ASP LYS SEQRES 7 B 320 PHE PHE LEU ASP ARG VAL LYS HIS VAL VAL ASP VAL ALA SEQRES 8 B 320 LEU LYS ASN ASP LEU VAL VAL ILE ILE ASN CYS HIS HIS SEQRES 9 B 320 PHE GLU GLU LEU TYR GLN ALA PRO ASP LYS TYR GLY PRO SEQRES 10 B 320 VAL LEU VAL GLU ILE TRP LYS GLN VAL ALA GLN ALA PHE SEQRES 11 B 320 LYS ASP TYR PRO ASP LYS LEU PHE PHE GLU ILE PHE ASN SEQRES 12 B 320 GLU PRO ALA GLN ASN LEU THR PRO THR LYS TRP ASN GLU SEQRES 13 B 320 LEU TYR PRO LYS VAL LEU GLY GLU ILE ARG LYS THR ASN SEQRES 14 B 320 PRO SER ARG ILE VAL ILE ILE ASP VAL PRO ASN TRP SER SEQRES 15 B 320 ASN TYR SER TYR VAL ARG GLU LEU LYS LEU VAL ASP ASP SEQRES 16 B 320 LYS ASN ILE ILE VAL SER PHE HIS TYR TYR GLU PRO PHE SEQRES 17 B 320 ASN PHE THR HIS GLN GLY ALA GLU TRP VAL SER PRO THR SEQRES 18 B 320 LEU PRO ILE GLY VAL LYS TRP GLU GLY LYS ASP TRP GLU SEQRES 19 B 320 VAL GLU GLN ILE ARG ASN HIS PHE LYS TYR VAL SER GLU SEQRES 20 B 320 TRP ALA LYS LYS ASN ASN VAL PRO ILE PHE LEU GLY GLU SEQRES 21 B 320 PHE GLY ALA TYR SER LYS ALA ASP MSE GLU SER ARG VAL SEQRES 22 B 320 LYS TRP THR LYS THR VAL ARG ARG ILE ALA GLU GLU PHE SEQRES 23 B 320 GLY PHE SER LEU ALA TYR TRP GLU PHE CYS ALA GLY PHE SEQRES 24 B 320 GLY LEU TYR ASP ARG TRP THR LYS THR TRP ILE GLU PRO SEQRES 25 B 320 LEU THR THR SER ALA LEU GLY LYS SEQRES 1 D 3 ALA ASN GLU SEQRES 1 E 3 ALA ASP GLN MODRES 3NCO MSE A 19 MET SELENOMETHIONINE MODRES 3NCO MSE A 26 MET SELENOMETHIONINE MODRES 3NCO MSE A 269 MET SELENOMETHIONINE MODRES 3NCO MSE B 19 MET SELENOMETHIONINE MODRES 3NCO MSE B 26 MET SELENOMETHIONINE MODRES 3NCO MSE B 269 MET SELENOMETHIONINE HET MSE A 19 8 HET MSE A 26 8 HET MSE A 269 8 HET MSE B 19 8 HET MSE B 26 8 HET MSE B 269 8 HET PO4 A 321 5 HET PO4 A 322 5 HET PO4 B 321 5 HET PO4 B 322 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *866(H2 O) HELIX 1 1 SER A 11 GLY A 21 1 11 HELIX 2 2 GLU A 43 GLY A 54 1 12 HELIX 3 3 ARG A 63 HIS A 67 5 5 HELIX 4 4 ASP A 77 ASN A 94 1 18 HELIX 5 5 PHE A 105 ALA A 111 1 7 HELIX 6 6 ALA A 111 LYS A 131 1 21 HELIX 7 7 THR A 150 ASN A 169 1 20 HELIX 8 8 PRO A 179 LEU A 190 5 12 HELIX 9 9 PRO A 207 HIS A 212 1 6 HELIX 10 10 LYS A 231 ASN A 253 1 23 HELIX 11 11 ASP A 268 PHE A 286 1 19 HELIX 12 12 CYS A 296 GLY A 300 5 5 HELIX 13 13 PRO A 312 GLY A 319 1 8 HELIX 14 14 SER B 11 GLY B 21 1 11 HELIX 15 15 ASP B 44 GLY B 54 1 11 HELIX 16 16 ARG B 63 HIS B 67 5 5 HELIX 17 17 ASP B 77 ASN B 94 1 18 HELIX 18 18 PHE B 105 ALA B 111 1 7 HELIX 19 19 ALA B 111 LYS B 131 1 21 HELIX 20 20 THR B 150 ASN B 169 1 20 HELIX 21 21 VAL B 178 ASN B 183 1 6 HELIX 22 22 TYR B 184 LEU B 190 5 7 HELIX 23 23 PRO B 207 HIS B 212 1 6 HELIX 24 24 LYS B 231 ASN B 252 1 22 HELIX 25 25 ASP B 268 PHE B 286 1 19 HELIX 26 26 CYS B 296 GLY B 300 5 5 HELIX 27 27 PRO B 312 GLY B 319 1 8 SHEET 1 A 9 HIS A 22 ASN A 25 0 SHEET 2 A 9 SER A 57 ILE A 60 1 O ARG A 59 N ILE A 24 SHEET 3 A 9 VAL A 97 ASN A 101 1 O ILE A 99 N ILE A 60 SHEET 4 A 9 LEU A 137 GLU A 140 1 O PHE A 138 N VAL A 98 SHEET 5 A 9 VAL A 174 ASP A 177 1 O ILE A 175 N PHE A 139 SHEET 6 A 9 ILE A 198 TYR A 204 1 O ILE A 199 N ILE A 176 SHEET 7 A 9 ILE A 256 PHE A 261 1 O GLU A 260 N TYR A 204 SHEET 8 A 9 SER A 289 TYR A 292 1 O SER A 289 N LEU A 258 SHEET 9 A 9 HIS A 22 ASN A 25 1 N GLY A 23 O LEU A 290 SHEET 1 B 2 TYR A 302 ASP A 303 0 SHEET 2 B 2 THR A 308 TRP A 309 -1 O THR A 308 N ASP A 303 SHEET 1 C 9 HIS B 22 ASN B 25 0 SHEET 2 C 9 SER B 57 ILE B 60 1 O ARG B 59 N ILE B 24 SHEET 3 C 9 VAL B 97 ILE B 100 1 O ILE B 99 N ILE B 60 SHEET 4 C 9 LEU B 137 GLU B 140 1 O PHE B 138 N VAL B 98 SHEET 5 C 9 VAL B 174 ASP B 177 1 O ILE B 175 N PHE B 139 SHEET 6 C 9 ILE B 198 TYR B 204 1 O ILE B 199 N ILE B 176 SHEET 7 C 9 ILE B 256 PHE B 261 1 O GLU B 260 N TYR B 204 SHEET 8 C 9 SER B 289 TYR B 292 1 O SER B 289 N LEU B 258 SHEET 9 C 9 HIS B 22 ASN B 25 1 N ASN B 25 O TYR B 292 SHEET 1 D 2 TYR B 302 ASP B 303 0 SHEET 2 D 2 THR B 308 TRP B 309 -1 O THR B 308 N ASP B 303 LINK C LYS A 18 N MSE A 19 1555 1555 1.33 LINK C MSE A 19 N ILE A 20 1555 1555 1.33 LINK C ASN A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N GLY A 27 1555 1555 1.33 LINK C ASP A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N GLU A 270 1555 1555 1.33 LINK C LYS B 18 N MSE B 19 1555 1555 1.34 LINK C MSE B 19 N ILE B 20 1555 1555 1.34 LINK C ASN B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N GLY B 27 1555 1555 1.32 LINK C ASP B 268 N MSE B 269 1555 1555 1.34 LINK C MSE B 269 N GLU B 270 1555 1555 1.33 CISPEP 1 TYR A 72 PRO A 73 0 1.44 CISPEP 2 GLU A 206 PRO A 207 0 -6.91 CISPEP 3 SER A 219 PRO A 220 0 0.36 CISPEP 4 TRP A 293 GLU A 294 0 4.99 CISPEP 5 GLU A 311 PRO A 312 0 1.09 CISPEP 6 TYR B 72 PRO B 73 0 1.39 CISPEP 7 GLU B 206 PRO B 207 0 -7.58 CISPEP 8 SER B 219 PRO B 220 0 -0.08 CISPEP 9 TRP B 293 GLU B 294 0 1.38 CISPEP 10 GLU B 311 PRO B 312 0 5.40 SITE 1 AC1 5 THR A 152 ASN A 155 HOH A 404 HOH A 426 SITE 2 AC1 5 GLN B 110 SITE 1 AC2 7 CYS A 296 ALA A 297 TYR A 302 ARG A 304 SITE 2 AC2 7 HOH A 459 HOH A 675 HOH A 783 SITE 1 AC3 7 GLN A 110 THR B 152 ASN B 155 LYS B 191 SITE 2 AC3 7 HOH B 438 HOH B 509 HOH B 607 SITE 1 AC4 7 LYS B 196 CYS B 296 ALA B 297 TYR B 302 SITE 2 AC4 7 ARG B 304 HOH B 559 HOH B 708 CRYST1 81.966 85.769 107.443 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009307 0.00000