data_3NCU # _entry.id 3NCU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NCU pdb_00003ncu 10.2210/pdb3ncu/pdb NDB NA0601 ? ? RCSB RCSB059668 ? ? WWPDB D_1000059668 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2qfb ;The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I ; unspecified PDB 2rmj 'Solution structure of RIG-I C-terminal domain' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NCU _pdbx_database_status.recvd_initial_deposition_date 2010-06-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, G.' 1 'Li, H.' 2 # _citation.id primary _citation.title ;Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I. ; _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 17 _citation.page_first 781 _citation.page_last 787 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20581823 _citation.pdbx_database_id_DOI 10.1038/nsmb.1863 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, Y.' 1 ? primary 'Ludwig, J.' 2 ? primary 'Schuberth, C.' 3 ? primary 'Goldeck, M.' 4 ? primary 'Schlee, M.' 5 ? primary 'Li, H.' 6 ? primary 'Juranek, S.' 7 ? primary 'Sheng, G.' 8 ? primary 'Micura, R.' 9 ? primary 'Tuschl, T.' 10 ? primary 'Hartmann, G.' 11 ? primary 'Patel, D.J.' 12 ? # _cell.entry_id 3NCU _cell.length_a 83.462 _cell.length_b 83.462 _cell.length_c 110.364 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NCU _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RIG-I 15659.178 2 3.6.1.- ? 'residues 792-925' ? 2 polymer syn "5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3'" 3907.316 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 102 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DEAD box protein 58, Retinoic acid-inducible gene 1 protein, Retinoic acid-inducible gene I protein, RIG-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSH DWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK ; ;DSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSH DWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK ; A,B ? 2 polyribonucleotide no yes '(GDP)ACGCUAGCGUC' GACGCUAGCGUC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 GLN n 1 4 GLU n 1 5 LYS n 1 6 PRO n 1 7 LYS n 1 8 PRO n 1 9 VAL n 1 10 PRO n 1 11 ASP n 1 12 LYS n 1 13 GLU n 1 14 ASN n 1 15 LYS n 1 16 LYS n 1 17 LEU n 1 18 LEU n 1 19 CYS n 1 20 ARG n 1 21 LYS n 1 22 CYS n 1 23 LYS n 1 24 ALA n 1 25 LEU n 1 26 ALA n 1 27 CYS n 1 28 TYR n 1 29 THR n 1 30 ALA n 1 31 ASP n 1 32 VAL n 1 33 ARG n 1 34 VAL n 1 35 ILE n 1 36 GLU n 1 37 GLU n 1 38 CYS n 1 39 HIS n 1 40 TYR n 1 41 THR n 1 42 VAL n 1 43 LEU n 1 44 GLY n 1 45 ASP n 1 46 ALA n 1 47 PHE n 1 48 LYS n 1 49 GLU n 1 50 CYS n 1 51 PHE n 1 52 VAL n 1 53 SER n 1 54 ARG n 1 55 PRO n 1 56 HIS n 1 57 PRO n 1 58 LYS n 1 59 PRO n 1 60 LYS n 1 61 GLN n 1 62 PHE n 1 63 SER n 1 64 SER n 1 65 PHE n 1 66 GLU n 1 67 LYS n 1 68 ARG n 1 69 ALA n 1 70 LYS n 1 71 ILE n 1 72 PHE n 1 73 CYS n 1 74 ALA n 1 75 ARG n 1 76 GLN n 1 77 ASN n 1 78 CYS n 1 79 SER n 1 80 HIS n 1 81 ASP n 1 82 TRP n 1 83 GLY n 1 84 ILE n 1 85 HIS n 1 86 VAL n 1 87 LYS n 1 88 TYR n 1 89 LYS n 1 90 THR n 1 91 PHE n 1 92 GLU n 1 93 ILE n 1 94 PRO n 1 95 VAL n 1 96 ILE n 1 97 LYS n 1 98 ILE n 1 99 GLU n 1 100 SER n 1 101 PHE n 1 102 VAL n 1 103 VAL n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 ALA n 1 108 THR n 1 109 GLY n 1 110 VAL n 1 111 GLN n 1 112 THR n 1 113 LEU n 1 114 TYR n 1 115 SER n 1 116 LYS n 1 117 TRP n 1 118 LYS n 1 119 ASP n 1 120 PHE n 1 121 HIS n 1 122 PHE n 1 123 GLU n 1 124 LYS n 1 125 ILE n 1 126 PRO n 1 127 PHE n 1 128 ASP n 1 129 PRO n 1 130 ALA n 1 131 GLU n 1 132 MET n 1 133 SER n 1 134 LYS n 2 1 GDP n 2 2 A n 2 3 C n 2 4 G n 2 5 C n 2 6 U n 2 7 A n 2 8 G n 2 9 C n 2 10 G n 2 11 U n 2 12 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DDX58, RIG-I' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-SUMO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DDX58_HUMAN O95786 1 ;DSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSH DWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK ; 792 ? 2 PDB 3NCU 3NCU 2 GACGCUAGCGUC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NCU A 1 ? 134 ? O95786 792 ? 925 ? 792 925 2 1 3NCU B 1 ? 134 ? O95786 792 ? 925 ? 792 925 3 2 3NCU C 1 ? 12 ? 3NCU 1 ? 12 ? 1 12 4 2 3NCU D 1 ? 12 ? 3NCU 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3NCU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;27% (v/v) polyethylene glycerol 3350 (PEG 3350), 50 mM Tris-HCl, pH 7.5, 0.1 M KCl, and 10 mM MgCl2 , VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2010-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BSRF BEAMLINE 3W1A' _diffrn_source.pdbx_synchrotron_site BSRF _diffrn_source.pdbx_synchrotron_beamline 3W1A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3NCU _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.55 _reflns.number_obs 14237 _reflns.number_all 2 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 734 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NCU _refine.ls_number_reflns_obs 14204 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.20 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.034 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 99.91 _refine.ls_R_factor_obs 0.1921 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1901 _refine.ls_R_factor_R_free 0.2289 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 712 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 3.8184 _refine.aniso_B[2][2] 3.8184 _refine.aniso_B[3][3] -7.6368 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.305 _refine.solvent_model_param_bsol 41.912 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2qfb _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1978 _refine_hist.pdbx_number_atoms_nucleic_acid 522 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 2604 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 39.034 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 2622 'X-RAY DIFFRACTION' ? f_angle_d 0.785 ? ? 3654 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.521 ? ? 1086 'X-RAY DIFFRACTION' ? f_chiral_restr 0.057 ? ? 406 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 368 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.55 2.7492 2661 0.2377 100.00 0.2859 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.7492 3.0257 2699 0.2264 100.00 0.2885 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.0257 3.4633 2692 0.2122 100.00 0.2719 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.4633 4.3625 2695 0.1804 100.00 0.2047 . . 138 . . . . 'X-RAY DIFFRACTION' . 4.3625 39.0383 2745 0.1561 100.00 0.1701 . . 129 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3NCU _struct.title 'Structural and functional insights into pattern recognition by the innate immune receptor RIG-I' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NCU _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'innate immune receptor, RIG-I c-terminal domain, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 44 ? GLU A 49 ? GLY A 835 GLU A 840 1 ? 6 HELX_P HELX_P2 2 LYS A 116 ? PHE A 120 ? LYS A 907 PHE A 911 5 ? 5 HELX_P HELX_P3 3 ASP A 128 ? MET A 132 ? ASP A 919 MET A 923 5 ? 5 HELX_P HELX_P4 4 GLY B 44 ? GLU B 49 ? GLY B 835 GLU B 840 1 ? 6 HELX_P HELX_P5 5 LYS B 116 ? PHE B 120 ? LYS B 907 PHE B 911 5 ? 5 HELX_P HELX_P6 6 ASP B 128 ? MET B 132 ? ASP B 919 MET B 923 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C GDP 1 "O3'" ? ? ? 1_555 C A 2 P ? ? C GDP 1 C A 2 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? D GDP 1 "O3'" ? ? ? 1_555 D A 2 P ? ? D GDP 1 D A 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 19 SG ? ? A ZN 1 A CYS 810 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc2 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 22 SG ? ? A ZN 1 A CYS 813 1_555 ? ? ? ? ? ? ? 2.309 ? ? metalc3 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 73 SG ? ? A ZN 1 A CYS 864 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 78 SG ? ? A ZN 1 A CYS 869 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc5 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 19 SG ? ? B ZN 2 B CYS 810 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 22 SG ? ? B ZN 2 B CYS 813 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 73 SG ? ? B ZN 2 B CYS 864 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 78 SG ? ? B ZN 2 B CYS 869 1_555 ? ? ? ? ? ? ? 2.400 ? ? hydrog1 hydrog ? ? C GDP 1 N1 ? ? ? 1_555 D C 12 N3 ? ? C GDP 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C GDP 1 N2 ? ? ? 1_555 D C 12 O2 ? ? C GDP 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C GDP 1 O6 ? ? ? 1_555 D C 12 N4 ? ? C GDP 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C A 2 N1 ? ? ? 1_555 D U 11 N3 ? ? C A 2 D U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C A 2 N6 ? ? ? 1_555 D U 11 O4 ? ? C A 2 D U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 10 N1 ? ? C C 3 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 10 O6 ? ? C C 3 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 10 N2 ? ? C C 3 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 4 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 4 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 4 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 7 N1 ? ? C U 6 D A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 7 N6 ? ? C U 6 D A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C A 7 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 7 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C A 7 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 7 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 9 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 9 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 9 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 10 O6 ? ? ? 1_555 D A 2 N6 ? ? C G 10 D A 2 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog26 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 10 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 10 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 10 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C U 11 N3 ? ? ? 1_555 D A 2 N1 ? ? C U 11 D A 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C U 11 O4 ? ? ? 1_555 D A 2 N6 ? ? C U 11 D A 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 12 N3 ? ? ? 1_555 D GDP 1 N1 ? ? C C 12 D GDP 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 12 N4 ? ? ? 1_555 D GDP 1 O6 ? ? C C 12 D GDP 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 12 O2 ? ? ? 1_555 D GDP 1 N2 ? ? C C 12 D GDP 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? D ? 4 ? E ? 2 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 25 ? TYR A 28 ? LEU A 816 TYR A 819 A 2 LYS A 15 ? CYS A 19 ? LYS A 806 CYS A 810 A 3 PHE A 101 ? ASP A 105 ? PHE A 892 ASP A 896 A 4 GLN A 111 ? THR A 112 ? GLN A 902 THR A 903 B 1 VAL A 32 ? ILE A 35 ? VAL A 823 ILE A 826 B 2 HIS A 39 ? VAL A 42 ? HIS A 830 VAL A 833 C 1 PHE A 51 ? PHE A 62 ? PHE A 842 PHE A 853 C 2 PHE A 65 ? CYS A 73 ? PHE A 856 CYS A 864 C 3 ASP A 81 ? TYR A 88 ? ASP A 872 TYR A 879 C 4 PHE A 91 ? ILE A 96 ? PHE A 882 ILE A 887 D 1 LEU B 25 ? TYR B 28 ? LEU B 816 TYR B 819 D 2 LYS B 15 ? CYS B 19 ? LYS B 806 CYS B 810 D 3 PHE B 101 ? ASP B 105 ? PHE B 892 ASP B 896 D 4 GLN B 111 ? THR B 112 ? GLN B 902 THR B 903 E 1 VAL B 32 ? ILE B 35 ? VAL B 823 ILE B 826 E 2 HIS B 39 ? VAL B 42 ? HIS B 830 VAL B 833 F 1 PHE B 51 ? PHE B 62 ? PHE B 842 PHE B 853 F 2 PHE B 65 ? CYS B 73 ? PHE B 856 CYS B 864 F 3 ASP B 81 ? TYR B 88 ? ASP B 872 TYR B 879 F 4 PHE B 91 ? ILE B 96 ? PHE B 882 ILE B 887 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 26 ? O ALA A 817 N LEU A 17 ? N LEU A 808 A 2 3 N LEU A 18 ? N LEU A 809 O VAL A 102 ? O VAL A 893 A 3 4 N VAL A 103 ? N VAL A 894 O THR A 112 ? O THR A 903 B 1 2 N ILE A 35 ? N ILE A 826 O HIS A 39 ? O HIS A 830 C 1 2 N HIS A 56 ? N HIS A 847 O ARG A 68 ? O ARG A 859 C 2 3 N ILE A 71 ? N ILE A 862 O TRP A 82 ? O TRP A 873 C 3 4 N VAL A 86 ? N VAL A 877 O ILE A 93 ? O ILE A 884 D 1 2 O ALA B 26 ? O ALA B 817 N LEU B 17 ? N LEU B 808 D 2 3 N LEU B 18 ? N LEU B 809 O VAL B 102 ? O VAL B 893 D 3 4 N VAL B 103 ? N VAL B 894 O THR B 112 ? O THR B 903 E 1 2 N ILE B 35 ? N ILE B 826 O HIS B 39 ? O HIS B 830 F 1 2 N LYS B 60 ? N LYS B 851 O LYS B 67 ? O LYS B 858 F 2 3 N ALA B 69 ? N ALA B 860 O HIS B 85 ? O HIS B 876 F 3 4 N ILE B 84 ? N ILE B 875 O VAL B 95 ? O VAL B 886 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1 ? 4 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software B ZN 2 ? 4 'BINDING SITE FOR RESIDUE ZN B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 19 ? CYS A 810 . ? 1_555 ? 2 AC1 4 CYS A 22 ? CYS A 813 . ? 1_555 ? 3 AC1 4 CYS A 73 ? CYS A 864 . ? 1_555 ? 4 AC1 4 CYS A 78 ? CYS A 869 . ? 1_555 ? 5 AC2 4 CYS B 19 ? CYS B 810 . ? 1_555 ? 6 AC2 4 CYS B 22 ? CYS B 813 . ? 1_555 ? 7 AC2 4 CYS B 73 ? CYS B 864 . ? 1_555 ? 8 AC2 4 CYS B 78 ? CYS B 869 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NCU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NCU _atom_sites.fract_transf_matrix[1][1] 0.011982 _atom_sites.fract_transf_matrix[1][2] 0.006918 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013835 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009061 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 792 ? ? ? A . n A 1 2 SER 2 793 ? ? ? A . n A 1 3 GLN 3 794 ? ? ? A . n A 1 4 GLU 4 795 ? ? ? A . n A 1 5 LYS 5 796 ? ? ? A . n A 1 6 PRO 6 797 ? ? ? A . n A 1 7 LYS 7 798 ? ? ? A . n A 1 8 PRO 8 799 ? ? ? A . n A 1 9 VAL 9 800 ? ? ? A . n A 1 10 PRO 10 801 ? ? ? A . n A 1 11 ASP 11 802 ? ? ? A . n A 1 12 LYS 12 803 ? ? ? A . n A 1 13 GLU 13 804 804 GLU GLU A . n A 1 14 ASN 14 805 805 ASN ASN A . n A 1 15 LYS 15 806 806 LYS LYS A . n A 1 16 LYS 16 807 807 LYS LYS A . n A 1 17 LEU 17 808 808 LEU LEU A . n A 1 18 LEU 18 809 809 LEU LEU A . n A 1 19 CYS 19 810 810 CYS CYS A . n A 1 20 ARG 20 811 811 ARG ARG A . n A 1 21 LYS 21 812 812 LYS LYS A . n A 1 22 CYS 22 813 813 CYS CYS A . n A 1 23 LYS 23 814 814 LYS LYS A . n A 1 24 ALA 24 815 815 ALA ALA A . n A 1 25 LEU 25 816 816 LEU LEU A . n A 1 26 ALA 26 817 817 ALA ALA A . n A 1 27 CYS 27 818 818 CYS CYS A . n A 1 28 TYR 28 819 819 TYR TYR A . n A 1 29 THR 29 820 820 THR THR A . n A 1 30 ALA 30 821 821 ALA ALA A . n A 1 31 ASP 31 822 822 ASP ASP A . n A 1 32 VAL 32 823 823 VAL VAL A . n A 1 33 ARG 33 824 824 ARG ARG A . n A 1 34 VAL 34 825 825 VAL VAL A . n A 1 35 ILE 35 826 826 ILE ILE A . n A 1 36 GLU 36 827 827 GLU GLU A . n A 1 37 GLU 37 828 828 GLU GLU A . n A 1 38 CYS 38 829 829 CYS CYS A . n A 1 39 HIS 39 830 830 HIS HIS A . n A 1 40 TYR 40 831 831 TYR TYR A . n A 1 41 THR 41 832 832 THR THR A . n A 1 42 VAL 42 833 833 VAL VAL A . n A 1 43 LEU 43 834 834 LEU LEU A . n A 1 44 GLY 44 835 835 GLY GLY A . n A 1 45 ASP 45 836 836 ASP ASP A . n A 1 46 ALA 46 837 837 ALA ALA A . n A 1 47 PHE 47 838 838 PHE PHE A . n A 1 48 LYS 48 839 839 LYS LYS A . n A 1 49 GLU 49 840 840 GLU GLU A . n A 1 50 CYS 50 841 841 CYS CYS A . n A 1 51 PHE 51 842 842 PHE PHE A . n A 1 52 VAL 52 843 843 VAL VAL A . n A 1 53 SER 53 844 844 SER SER A . n A 1 54 ARG 54 845 845 ARG ARG A . n A 1 55 PRO 55 846 846 PRO PRO A . n A 1 56 HIS 56 847 847 HIS HIS A . n A 1 57 PRO 57 848 848 PRO PRO A . n A 1 58 LYS 58 849 849 LYS LYS A . n A 1 59 PRO 59 850 850 PRO PRO A . n A 1 60 LYS 60 851 851 LYS LYS A . n A 1 61 GLN 61 852 852 GLN GLN A . n A 1 62 PHE 62 853 853 PHE PHE A . n A 1 63 SER 63 854 854 SER SER A . n A 1 64 SER 64 855 855 SER SER A . n A 1 65 PHE 65 856 856 PHE PHE A . n A 1 66 GLU 66 857 857 GLU GLU A . n A 1 67 LYS 67 858 858 LYS LYS A . n A 1 68 ARG 68 859 859 ARG ARG A . n A 1 69 ALA 69 860 860 ALA ALA A . n A 1 70 LYS 70 861 861 LYS LYS A . n A 1 71 ILE 71 862 862 ILE ILE A . n A 1 72 PHE 72 863 863 PHE PHE A . n A 1 73 CYS 73 864 864 CYS CYS A . n A 1 74 ALA 74 865 865 ALA ALA A . n A 1 75 ARG 75 866 866 ARG ARG A . n A 1 76 GLN 76 867 867 GLN GLN A . n A 1 77 ASN 77 868 868 ASN ASN A . n A 1 78 CYS 78 869 869 CYS CYS A . n A 1 79 SER 79 870 870 SER SER A . n A 1 80 HIS 80 871 871 HIS HIS A . n A 1 81 ASP 81 872 872 ASP ASP A . n A 1 82 TRP 82 873 873 TRP TRP A . n A 1 83 GLY 83 874 874 GLY GLY A . n A 1 84 ILE 84 875 875 ILE ILE A . n A 1 85 HIS 85 876 876 HIS HIS A . n A 1 86 VAL 86 877 877 VAL VAL A . n A 1 87 LYS 87 878 878 LYS LYS A . n A 1 88 TYR 88 879 879 TYR TYR A . n A 1 89 LYS 89 880 880 LYS LYS A . n A 1 90 THR 90 881 881 THR THR A . n A 1 91 PHE 91 882 882 PHE PHE A . n A 1 92 GLU 92 883 883 GLU GLU A . n A 1 93 ILE 93 884 884 ILE ILE A . n A 1 94 PRO 94 885 885 PRO PRO A . n A 1 95 VAL 95 886 886 VAL VAL A . n A 1 96 ILE 96 887 887 ILE ILE A . n A 1 97 LYS 97 888 888 LYS LYS A . n A 1 98 ILE 98 889 889 ILE ILE A . n A 1 99 GLU 99 890 890 GLU GLU A . n A 1 100 SER 100 891 891 SER SER A . n A 1 101 PHE 101 892 892 PHE PHE A . n A 1 102 VAL 102 893 893 VAL VAL A . n A 1 103 VAL 103 894 894 VAL VAL A . n A 1 104 GLU 104 895 895 GLU GLU A . n A 1 105 ASP 105 896 896 ASP ASP A . n A 1 106 ILE 106 897 897 ILE ILE A . n A 1 107 ALA 107 898 898 ALA ALA A . n A 1 108 THR 108 899 899 THR THR A . n A 1 109 GLY 109 900 900 GLY GLY A . n A 1 110 VAL 110 901 901 VAL VAL A . n A 1 111 GLN 111 902 902 GLN GLN A . n A 1 112 THR 112 903 903 THR THR A . n A 1 113 LEU 113 904 904 LEU LEU A . n A 1 114 TYR 114 905 905 TYR TYR A . n A 1 115 SER 115 906 906 SER SER A . n A 1 116 LYS 116 907 907 LYS LYS A . n A 1 117 TRP 117 908 908 TRP TRP A . n A 1 118 LYS 118 909 909 LYS LYS A . n A 1 119 ASP 119 910 910 ASP ASP A . n A 1 120 PHE 120 911 911 PHE PHE A . n A 1 121 HIS 121 912 912 HIS HIS A . n A 1 122 PHE 122 913 913 PHE PHE A . n A 1 123 GLU 123 914 914 GLU GLU A . n A 1 124 LYS 124 915 915 LYS LYS A . n A 1 125 ILE 125 916 916 ILE ILE A . n A 1 126 PRO 126 917 917 PRO PRO A . n A 1 127 PHE 127 918 918 PHE PHE A . n A 1 128 ASP 128 919 919 ASP ASP A . n A 1 129 PRO 129 920 920 PRO PRO A . n A 1 130 ALA 130 921 921 ALA ALA A . n A 1 131 GLU 131 922 922 GLU GLU A . n A 1 132 MET 132 923 923 MET MET A . n A 1 133 SER 133 924 ? ? ? A . n A 1 134 LYS 134 925 ? ? ? A . n B 1 1 ASP 1 792 ? ? ? B . n B 1 2 SER 2 793 ? ? ? B . n B 1 3 GLN 3 794 ? ? ? B . n B 1 4 GLU 4 795 ? ? ? B . n B 1 5 LYS 5 796 ? ? ? B . n B 1 6 PRO 6 797 ? ? ? B . n B 1 7 LYS 7 798 ? ? ? B . n B 1 8 PRO 8 799 ? ? ? B . n B 1 9 VAL 9 800 ? ? ? B . n B 1 10 PRO 10 801 ? ? ? B . n B 1 11 ASP 11 802 ? ? ? B . n B 1 12 LYS 12 803 ? ? ? B . n B 1 13 GLU 13 804 804 GLU GLU B . n B 1 14 ASN 14 805 805 ASN ASN B . n B 1 15 LYS 15 806 806 LYS LYS B . n B 1 16 LYS 16 807 807 LYS LYS B . n B 1 17 LEU 17 808 808 LEU LEU B . n B 1 18 LEU 18 809 809 LEU LEU B . n B 1 19 CYS 19 810 810 CYS CYS B . n B 1 20 ARG 20 811 811 ARG ARG B . n B 1 21 LYS 21 812 812 LYS LYS B . n B 1 22 CYS 22 813 813 CYS CYS B . n B 1 23 LYS 23 814 814 LYS LYS B . n B 1 24 ALA 24 815 815 ALA ALA B . n B 1 25 LEU 25 816 816 LEU LEU B . n B 1 26 ALA 26 817 817 ALA ALA B . n B 1 27 CYS 27 818 818 CYS CYS B . n B 1 28 TYR 28 819 819 TYR TYR B . n B 1 29 THR 29 820 820 THR THR B . n B 1 30 ALA 30 821 821 ALA ALA B . n B 1 31 ASP 31 822 822 ASP ASP B . n B 1 32 VAL 32 823 823 VAL VAL B . n B 1 33 ARG 33 824 824 ARG ARG B . n B 1 34 VAL 34 825 825 VAL VAL B . n B 1 35 ILE 35 826 826 ILE ILE B . n B 1 36 GLU 36 827 827 GLU GLU B . n B 1 37 GLU 37 828 828 GLU GLU B . n B 1 38 CYS 38 829 829 CYS CYS B . n B 1 39 HIS 39 830 830 HIS HIS B . n B 1 40 TYR 40 831 831 TYR TYR B . n B 1 41 THR 41 832 832 THR THR B . n B 1 42 VAL 42 833 833 VAL VAL B . n B 1 43 LEU 43 834 834 LEU LEU B . n B 1 44 GLY 44 835 835 GLY GLY B . n B 1 45 ASP 45 836 836 ASP ASP B . n B 1 46 ALA 46 837 837 ALA ALA B . n B 1 47 PHE 47 838 838 PHE PHE B . n B 1 48 LYS 48 839 839 LYS LYS B . n B 1 49 GLU 49 840 840 GLU GLU B . n B 1 50 CYS 50 841 841 CYS CYS B . n B 1 51 PHE 51 842 842 PHE PHE B . n B 1 52 VAL 52 843 843 VAL VAL B . n B 1 53 SER 53 844 844 SER SER B . n B 1 54 ARG 54 845 845 ARG ARG B . n B 1 55 PRO 55 846 846 PRO PRO B . n B 1 56 HIS 56 847 847 HIS HIS B . n B 1 57 PRO 57 848 848 PRO PRO B . n B 1 58 LYS 58 849 849 LYS LYS B . n B 1 59 PRO 59 850 850 PRO PRO B . n B 1 60 LYS 60 851 851 LYS LYS B . n B 1 61 GLN 61 852 852 GLN GLN B . n B 1 62 PHE 62 853 853 PHE PHE B . n B 1 63 SER 63 854 854 SER SER B . n B 1 64 SER 64 855 855 SER SER B . n B 1 65 PHE 65 856 856 PHE PHE B . n B 1 66 GLU 66 857 857 GLU GLU B . n B 1 67 LYS 67 858 858 LYS LYS B . n B 1 68 ARG 68 859 859 ARG ARG B . n B 1 69 ALA 69 860 860 ALA ALA B . n B 1 70 LYS 70 861 861 LYS LYS B . n B 1 71 ILE 71 862 862 ILE ILE B . n B 1 72 PHE 72 863 863 PHE PHE B . n B 1 73 CYS 73 864 864 CYS CYS B . n B 1 74 ALA 74 865 865 ALA ALA B . n B 1 75 ARG 75 866 866 ARG ARG B . n B 1 76 GLN 76 867 867 GLN GLN B . n B 1 77 ASN 77 868 868 ASN ASN B . n B 1 78 CYS 78 869 869 CYS CYS B . n B 1 79 SER 79 870 870 SER SER B . n B 1 80 HIS 80 871 871 HIS HIS B . n B 1 81 ASP 81 872 872 ASP ASP B . n B 1 82 TRP 82 873 873 TRP TRP B . n B 1 83 GLY 83 874 874 GLY GLY B . n B 1 84 ILE 84 875 875 ILE ILE B . n B 1 85 HIS 85 876 876 HIS HIS B . n B 1 86 VAL 86 877 877 VAL VAL B . n B 1 87 LYS 87 878 878 LYS LYS B . n B 1 88 TYR 88 879 879 TYR TYR B . n B 1 89 LYS 89 880 880 LYS LYS B . n B 1 90 THR 90 881 881 THR THR B . n B 1 91 PHE 91 882 882 PHE PHE B . n B 1 92 GLU 92 883 883 GLU GLU B . n B 1 93 ILE 93 884 884 ILE ILE B . n B 1 94 PRO 94 885 885 PRO PRO B . n B 1 95 VAL 95 886 886 VAL VAL B . n B 1 96 ILE 96 887 887 ILE ILE B . n B 1 97 LYS 97 888 888 LYS LYS B . n B 1 98 ILE 98 889 889 ILE ILE B . n B 1 99 GLU 99 890 890 GLU GLU B . n B 1 100 SER 100 891 891 SER SER B . n B 1 101 PHE 101 892 892 PHE PHE B . n B 1 102 VAL 102 893 893 VAL VAL B . n B 1 103 VAL 103 894 894 VAL VAL B . n B 1 104 GLU 104 895 895 GLU GLU B . n B 1 105 ASP 105 896 896 ASP ASP B . n B 1 106 ILE 106 897 897 ILE ILE B . n B 1 107 ALA 107 898 898 ALA ALA B . n B 1 108 THR 108 899 899 THR THR B . n B 1 109 GLY 109 900 900 GLY GLY B . n B 1 110 VAL 110 901 901 VAL VAL B . n B 1 111 GLN 111 902 902 GLN GLN B . n B 1 112 THR 112 903 903 THR THR B . n B 1 113 LEU 113 904 904 LEU LEU B . n B 1 114 TYR 114 905 905 TYR TYR B . n B 1 115 SER 115 906 906 SER SER B . n B 1 116 LYS 116 907 907 LYS LYS B . n B 1 117 TRP 117 908 908 TRP TRP B . n B 1 118 LYS 118 909 909 LYS LYS B . n B 1 119 ASP 119 910 910 ASP ASP B . n B 1 120 PHE 120 911 911 PHE PHE B . n B 1 121 HIS 121 912 912 HIS HIS B . n B 1 122 PHE 122 913 913 PHE PHE B . n B 1 123 GLU 123 914 914 GLU GLU B . n B 1 124 LYS 124 915 915 LYS LYS B . n B 1 125 ILE 125 916 916 ILE ILE B . n B 1 126 PRO 126 917 917 PRO PRO B . n B 1 127 PHE 127 918 918 PHE PHE B . n B 1 128 ASP 128 919 919 ASP ASP B . n B 1 129 PRO 129 920 920 PRO PRO B . n B 1 130 ALA 130 921 921 ALA ALA B . n B 1 131 GLU 131 922 922 GLU GLU B . n B 1 132 MET 132 923 923 MET MET B . n B 1 133 SER 133 924 ? ? ? B . n B 1 134 LYS 134 925 ? ? ? B . n C 2 1 GDP 1 1 1 GDP GDP C . n C 2 2 A 2 2 2 A A C . n C 2 3 C 3 3 3 C C C . n C 2 4 G 4 4 4 G G C . n C 2 5 C 5 5 5 C C C . n C 2 6 U 6 6 6 U U C . n C 2 7 A 7 7 7 A A C . n C 2 8 G 8 8 8 G G C . n C 2 9 C 9 9 9 C C C . n C 2 10 G 10 10 10 G G C . n C 2 11 U 11 11 11 U U C . n C 2 12 C 12 12 12 C C C . n D 2 1 GDP 1 1 1 GDP GDP D . n D 2 2 A 2 2 2 A A D . n D 2 3 C 3 3 3 C C D . n D 2 4 G 4 4 4 G G D . n D 2 5 C 5 5 5 C C D . n D 2 6 U 6 6 6 U U D . n D 2 7 A 7 7 7 A A D . n D 2 8 G 8 8 8 G G D . n D 2 9 C 9 9 9 C C D . n D 2 10 G 10 10 10 G G D . n D 2 11 U 11 11 11 U U D . n D 2 12 C 12 12 12 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 1 1 ZN ZN A . F 3 ZN 1 2 2 ZN ZN B . G 4 HOH 1 2 2 HOH HOH A . G 4 HOH 2 3 3 HOH HOH A . G 4 HOH 3 4 4 HOH HOH A . G 4 HOH 4 6 6 HOH HOH A . G 4 HOH 5 8 8 HOH HOH A . G 4 HOH 6 9 9 HOH HOH A . G 4 HOH 7 11 11 HOH HOH A . G 4 HOH 8 15 15 HOH HOH A . G 4 HOH 9 17 17 HOH HOH A . G 4 HOH 10 23 23 HOH HOH A . G 4 HOH 11 24 24 HOH HOH A . G 4 HOH 12 25 25 HOH HOH A . G 4 HOH 13 27 27 HOH HOH A . G 4 HOH 14 29 29 HOH HOH A . G 4 HOH 15 32 32 HOH HOH A . G 4 HOH 16 35 35 HOH HOH A . G 4 HOH 17 36 36 HOH HOH A . G 4 HOH 18 37 37 HOH HOH A . G 4 HOH 19 38 38 HOH HOH A . G 4 HOH 20 39 39 HOH HOH A . G 4 HOH 21 41 41 HOH HOH A . G 4 HOH 22 43 43 HOH HOH A . G 4 HOH 23 49 49 HOH HOH A . G 4 HOH 24 51 51 HOH HOH A . G 4 HOH 25 53 53 HOH HOH A . G 4 HOH 26 54 54 HOH HOH A . G 4 HOH 27 55 55 HOH HOH A . G 4 HOH 28 56 56 HOH HOH A . G 4 HOH 29 59 59 HOH HOH A . G 4 HOH 30 63 63 HOH HOH A . G 4 HOH 31 66 66 HOH HOH A . G 4 HOH 32 70 70 HOH HOH A . G 4 HOH 33 72 72 HOH HOH A . G 4 HOH 34 75 75 HOH HOH A . G 4 HOH 35 78 78 HOH HOH A . G 4 HOH 36 80 80 HOH HOH A . G 4 HOH 37 81 81 HOH HOH A . G 4 HOH 38 84 84 HOH HOH A . G 4 HOH 39 86 86 HOH HOH A . G 4 HOH 40 94 94 HOH HOH A . G 4 HOH 41 96 96 HOH HOH A . G 4 HOH 42 99 99 HOH HOH A . G 4 HOH 43 100 100 HOH HOH A . G 4 HOH 44 101 101 HOH HOH A . G 4 HOH 45 105 105 HOH HOH A . G 4 HOH 46 107 107 HOH HOH A . G 4 HOH 47 108 108 HOH HOH A . G 4 HOH 48 109 109 HOH HOH A . G 4 HOH 49 926 1 HOH HOH A . H 4 HOH 1 7 7 HOH HOH B . H 4 HOH 2 10 10 HOH HOH B . H 4 HOH 3 12 12 HOH HOH B . H 4 HOH 4 14 14 HOH HOH B . H 4 HOH 5 16 16 HOH HOH B . H 4 HOH 6 19 19 HOH HOH B . H 4 HOH 7 21 21 HOH HOH B . H 4 HOH 8 22 22 HOH HOH B . H 4 HOH 9 26 26 HOH HOH B . H 4 HOH 10 28 28 HOH HOH B . H 4 HOH 11 30 30 HOH HOH B . H 4 HOH 12 31 31 HOH HOH B . H 4 HOH 13 33 33 HOH HOH B . H 4 HOH 14 34 34 HOH HOH B . H 4 HOH 15 42 42 HOH HOH B . H 4 HOH 16 44 44 HOH HOH B . H 4 HOH 17 45 45 HOH HOH B . H 4 HOH 18 46 46 HOH HOH B . H 4 HOH 19 47 47 HOH HOH B . H 4 HOH 20 48 48 HOH HOH B . H 4 HOH 21 50 50 HOH HOH B . H 4 HOH 22 52 52 HOH HOH B . H 4 HOH 23 58 58 HOH HOH B . H 4 HOH 24 60 60 HOH HOH B . H 4 HOH 25 61 61 HOH HOH B . H 4 HOH 26 62 62 HOH HOH B . H 4 HOH 27 64 64 HOH HOH B . H 4 HOH 28 65 65 HOH HOH B . H 4 HOH 29 69 69 HOH HOH B . H 4 HOH 30 71 71 HOH HOH B . H 4 HOH 31 73 73 HOH HOH B . H 4 HOH 32 74 74 HOH HOH B . H 4 HOH 33 76 76 HOH HOH B . H 4 HOH 34 79 79 HOH HOH B . H 4 HOH 35 83 83 HOH HOH B . H 4 HOH 36 85 85 HOH HOH B . H 4 HOH 37 87 87 HOH HOH B . H 4 HOH 38 88 88 HOH HOH B . H 4 HOH 39 89 89 HOH HOH B . H 4 HOH 40 90 90 HOH HOH B . H 4 HOH 41 91 91 HOH HOH B . H 4 HOH 42 92 92 HOH HOH B . H 4 HOH 43 93 93 HOH HOH B . H 4 HOH 44 95 95 HOH HOH B . H 4 HOH 45 97 97 HOH HOH B . I 4 HOH 1 13 5 HOH HOH C . I 4 HOH 2 68 68 HOH HOH C . I 4 HOH 3 82 82 HOH HOH C . I 4 HOH 4 98 98 HOH HOH C . J 4 HOH 1 20 20 HOH HOH D . J 4 HOH 2 40 40 HOH HOH D . J 4 HOH 3 57 57 HOH HOH D . J 4 HOH 4 106 106 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C GDP 1 C GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" 2 D GDP 1 D GDP 1 ? G "GUANOSINE-5'-DIPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4290 ? 1 MORE -24 ? 1 'SSA (A^2)' 16080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 19 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 22 ? A CYS 813 ? 1_555 114.1 ? 2 SG ? A CYS 19 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 73 ? A CYS 864 ? 1_555 114.8 ? 3 SG ? A CYS 22 ? A CYS 813 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 73 ? A CYS 864 ? 1_555 103.2 ? 4 SG ? A CYS 19 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 78 ? A CYS 869 ? 1_555 107.5 ? 5 SG ? A CYS 22 ? A CYS 813 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 78 ? A CYS 869 ? 1_555 109.8 ? 6 SG ? A CYS 73 ? A CYS 864 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 78 ? A CYS 869 ? 1_555 107.2 ? 7 SG ? B CYS 19 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 22 ? B CYS 813 ? 1_555 113.6 ? 8 SG ? B CYS 19 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 73 ? B CYS 864 ? 1_555 109.3 ? 9 SG ? B CYS 22 ? B CYS 813 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 73 ? B CYS 864 ? 1_555 113.7 ? 10 SG ? B CYS 19 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 78 ? B CYS 869 ? 1_555 101.2 ? 11 SG ? B CYS 22 ? B CYS 813 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 78 ? B CYS 869 ? 1_555 111.3 ? 12 SG ? B CYS 73 ? B CYS 864 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 78 ? B CYS 869 ? 1_555 106.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.value' 8 3 'Structure model' '_struct_conn.pdbx_dist_value' 9 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 818 ? ? -171.00 -174.74 2 1 CYS A 829 ? ? -144.85 -31.63 3 1 SER A 854 ? ? 50.39 -128.52 4 1 ASN A 868 ? ? 80.71 -9.12 5 1 CYS A 869 ? ? -103.77 -74.67 6 1 LYS A 880 ? ? 55.47 -120.45 7 1 GLU A 914 ? ? -63.86 97.59 8 1 CYS B 818 ? ? -164.17 -168.79 9 1 CYS B 829 ? ? -138.06 -34.92 10 1 LYS B 851 ? ? 174.63 161.48 11 1 SER B 854 ? ? 48.89 -117.92 12 1 CYS B 869 ? ? -121.90 -79.81 13 1 LYS B 880 ? ? 57.76 -115.67 14 1 GLU B 914 ? ? -66.42 97.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 807 ? NZ ? A LYS 16 NZ 2 1 Y 0 A LYS 878 ? NZ ? A LYS 87 NZ 3 1 Y 0 A GLU 914 ? CD ? A GLU 123 CD 4 1 Y 0 A GLU 914 ? OE1 ? A GLU 123 OE1 5 1 Y 0 A GLU 914 ? OE2 ? A GLU 123 OE2 6 1 Y 0 B LYS 806 ? NZ ? B LYS 15 NZ 7 1 Y 0 B LYS 807 ? NZ ? B LYS 16 NZ 8 1 Y 0 B GLU 914 ? CD ? B GLU 123 CD 9 1 Y 0 B GLU 914 ? OE1 ? B GLU 123 OE1 10 1 Y 0 B GLU 914 ? OE2 ? B GLU 123 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 792 ? A ASP 1 2 1 Y 1 A SER 793 ? A SER 2 3 1 Y 1 A GLN 794 ? A GLN 3 4 1 Y 1 A GLU 795 ? A GLU 4 5 1 Y 1 A LYS 796 ? A LYS 5 6 1 Y 1 A PRO 797 ? A PRO 6 7 1 Y 1 A LYS 798 ? A LYS 7 8 1 Y 1 A PRO 799 ? A PRO 8 9 1 Y 1 A VAL 800 ? A VAL 9 10 1 Y 1 A PRO 801 ? A PRO 10 11 1 Y 1 A ASP 802 ? A ASP 11 12 1 Y 1 A LYS 803 ? A LYS 12 13 1 Y 1 A SER 924 ? A SER 133 14 1 Y 1 A LYS 925 ? A LYS 134 15 1 Y 1 B ASP 792 ? B ASP 1 16 1 Y 1 B SER 793 ? B SER 2 17 1 Y 1 B GLN 794 ? B GLN 3 18 1 Y 1 B GLU 795 ? B GLU 4 19 1 Y 1 B LYS 796 ? B LYS 5 20 1 Y 1 B PRO 797 ? B PRO 6 21 1 Y 1 B LYS 798 ? B LYS 7 22 1 Y 1 B PRO 799 ? B PRO 8 23 1 Y 1 B VAL 800 ? B VAL 9 24 1 Y 1 B PRO 801 ? B PRO 10 25 1 Y 1 B ASP 802 ? B ASP 11 26 1 Y 1 B LYS 803 ? B LYS 12 27 1 Y 1 B SER 924 ? B SER 133 28 1 Y 1 B LYS 925 ? B LYS 134 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GDP PB P N N 198 GDP O1B O N N 199 GDP O2B O N N 200 GDP O3B O N N 201 GDP O3A O N N 202 GDP PA P N N 203 GDP O1A O N N 204 GDP O2A O N N 205 GDP "O5'" O N N 206 GDP "C5'" C N N 207 GDP "C4'" C N R 208 GDP "O4'" O N N 209 GDP "C3'" C N S 210 GDP "O3'" O N N 211 GDP "C2'" C N R 212 GDP "O2'" O N N 213 GDP "C1'" C N R 214 GDP N9 N Y N 215 GDP C8 C Y N 216 GDP N7 N Y N 217 GDP C5 C Y N 218 GDP C6 C N N 219 GDP O6 O N N 220 GDP N1 N N N 221 GDP C2 C N N 222 GDP N2 N N N 223 GDP N3 N N N 224 GDP C4 C Y N 225 GDP HOB2 H N N 226 GDP HOB3 H N N 227 GDP HOA2 H N N 228 GDP "H5'" H N N 229 GDP "H5''" H N N 230 GDP "H4'" H N N 231 GDP "H3'" H N N 232 GDP "HO3'" H N N 233 GDP "H2'" H N N 234 GDP "HO2'" H N N 235 GDP "H1'" H N N 236 GDP H8 H N N 237 GDP HN1 H N N 238 GDP HN21 H N N 239 GDP HN22 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 PRO N N N N 426 PRO CA C N S 427 PRO C C N N 428 PRO O O N N 429 PRO CB C N N 430 PRO CG C N N 431 PRO CD C N N 432 PRO OXT O N N 433 PRO H H N N 434 PRO HA H N N 435 PRO HB2 H N N 436 PRO HB3 H N N 437 PRO HG2 H N N 438 PRO HG3 H N N 439 PRO HD2 H N N 440 PRO HD3 H N N 441 PRO HXT H N N 442 SER N N N N 443 SER CA C N S 444 SER C C N N 445 SER O O N N 446 SER CB C N N 447 SER OG O N N 448 SER OXT O N N 449 SER H H N N 450 SER H2 H N N 451 SER HA H N N 452 SER HB2 H N N 453 SER HB3 H N N 454 SER HG H N N 455 SER HXT H N N 456 THR N N N N 457 THR CA C N S 458 THR C C N N 459 THR O O N N 460 THR CB C N R 461 THR OG1 O N N 462 THR CG2 C N N 463 THR OXT O N N 464 THR H H N N 465 THR H2 H N N 466 THR HA H N N 467 THR HB H N N 468 THR HG1 H N N 469 THR HG21 H N N 470 THR HG22 H N N 471 THR HG23 H N N 472 THR HXT H N N 473 TRP N N N N 474 TRP CA C N S 475 TRP C C N N 476 TRP O O N N 477 TRP CB C N N 478 TRP CG C Y N 479 TRP CD1 C Y N 480 TRP CD2 C Y N 481 TRP NE1 N Y N 482 TRP CE2 C Y N 483 TRP CE3 C Y N 484 TRP CZ2 C Y N 485 TRP CZ3 C Y N 486 TRP CH2 C Y N 487 TRP OXT O N N 488 TRP H H N N 489 TRP H2 H N N 490 TRP HA H N N 491 TRP HB2 H N N 492 TRP HB3 H N N 493 TRP HD1 H N N 494 TRP HE1 H N N 495 TRP HE3 H N N 496 TRP HZ2 H N N 497 TRP HZ3 H N N 498 TRP HH2 H N N 499 TRP HXT H N N 500 TYR N N N N 501 TYR CA C N S 502 TYR C C N N 503 TYR O O N N 504 TYR CB C N N 505 TYR CG C Y N 506 TYR CD1 C Y N 507 TYR CD2 C Y N 508 TYR CE1 C Y N 509 TYR CE2 C Y N 510 TYR CZ C Y N 511 TYR OH O N N 512 TYR OXT O N N 513 TYR H H N N 514 TYR H2 H N N 515 TYR HA H N N 516 TYR HB2 H N N 517 TYR HB3 H N N 518 TYR HD1 H N N 519 TYR HD2 H N N 520 TYR HE1 H N N 521 TYR HE2 H N N 522 TYR HH H N N 523 TYR HXT H N N 524 U OP3 O N N 525 U P P N N 526 U OP1 O N N 527 U OP2 O N N 528 U "O5'" O N N 529 U "C5'" C N N 530 U "C4'" C N R 531 U "O4'" O N N 532 U "C3'" C N S 533 U "O3'" O N N 534 U "C2'" C N R 535 U "O2'" O N N 536 U "C1'" C N R 537 U N1 N N N 538 U C2 C N N 539 U O2 O N N 540 U N3 N N N 541 U C4 C N N 542 U O4 O N N 543 U C5 C N N 544 U C6 C N N 545 U HOP3 H N N 546 U HOP2 H N N 547 U "H5'" H N N 548 U "H5''" H N N 549 U "H4'" H N N 550 U "H3'" H N N 551 U "HO3'" H N N 552 U "H2'" H N N 553 U "HO2'" H N N 554 U "H1'" H N N 555 U H3 H N N 556 U H5 H N N 557 U H6 H N N 558 VAL N N N N 559 VAL CA C N S 560 VAL C C N N 561 VAL O O N N 562 VAL CB C N N 563 VAL CG1 C N N 564 VAL CG2 C N N 565 VAL OXT O N N 566 VAL H H N N 567 VAL H2 H N N 568 VAL HA H N N 569 VAL HB H N N 570 VAL HG11 H N N 571 VAL HG12 H N N 572 VAL HG13 H N N 573 VAL HG21 H N N 574 VAL HG22 H N N 575 VAL HG23 H N N 576 VAL HXT H N N 577 ZN ZN ZN N N 578 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GDP PB O1B doub N N 198 GDP PB O2B sing N N 199 GDP PB O3B sing N N 200 GDP PB O3A sing N N 201 GDP O2B HOB2 sing N N 202 GDP O3B HOB3 sing N N 203 GDP O3A PA sing N N 204 GDP PA O1A doub N N 205 GDP PA O2A sing N N 206 GDP PA "O5'" sing N N 207 GDP O2A HOA2 sing N N 208 GDP "O5'" "C5'" sing N N 209 GDP "C5'" "C4'" sing N N 210 GDP "C5'" "H5'" sing N N 211 GDP "C5'" "H5''" sing N N 212 GDP "C4'" "O4'" sing N N 213 GDP "C4'" "C3'" sing N N 214 GDP "C4'" "H4'" sing N N 215 GDP "O4'" "C1'" sing N N 216 GDP "C3'" "O3'" sing N N 217 GDP "C3'" "C2'" sing N N 218 GDP "C3'" "H3'" sing N N 219 GDP "O3'" "HO3'" sing N N 220 GDP "C2'" "O2'" sing N N 221 GDP "C2'" "C1'" sing N N 222 GDP "C2'" "H2'" sing N N 223 GDP "O2'" "HO2'" sing N N 224 GDP "C1'" N9 sing N N 225 GDP "C1'" "H1'" sing N N 226 GDP N9 C8 sing Y N 227 GDP N9 C4 sing Y N 228 GDP C8 N7 doub Y N 229 GDP C8 H8 sing N N 230 GDP N7 C5 sing Y N 231 GDP C5 C6 sing N N 232 GDP C5 C4 doub Y N 233 GDP C6 O6 doub N N 234 GDP C6 N1 sing N N 235 GDP N1 C2 sing N N 236 GDP N1 HN1 sing N N 237 GDP C2 N2 sing N N 238 GDP C2 N3 doub N N 239 GDP N2 HN21 sing N N 240 GDP N2 HN22 sing N N 241 GDP N3 C4 sing N N 242 GLN N CA sing N N 243 GLN N H sing N N 244 GLN N H2 sing N N 245 GLN CA C sing N N 246 GLN CA CB sing N N 247 GLN CA HA sing N N 248 GLN C O doub N N 249 GLN C OXT sing N N 250 GLN CB CG sing N N 251 GLN CB HB2 sing N N 252 GLN CB HB3 sing N N 253 GLN CG CD sing N N 254 GLN CG HG2 sing N N 255 GLN CG HG3 sing N N 256 GLN CD OE1 doub N N 257 GLN CD NE2 sing N N 258 GLN NE2 HE21 sing N N 259 GLN NE2 HE22 sing N N 260 GLN OXT HXT sing N N 261 GLU N CA sing N N 262 GLU N H sing N N 263 GLU N H2 sing N N 264 GLU CA C sing N N 265 GLU CA CB sing N N 266 GLU CA HA sing N N 267 GLU C O doub N N 268 GLU C OXT sing N N 269 GLU CB CG sing N N 270 GLU CB HB2 sing N N 271 GLU CB HB3 sing N N 272 GLU CG CD sing N N 273 GLU CG HG2 sing N N 274 GLU CG HG3 sing N N 275 GLU CD OE1 doub N N 276 GLU CD OE2 sing N N 277 GLU OE2 HE2 sing N N 278 GLU OXT HXT sing N N 279 GLY N CA sing N N 280 GLY N H sing N N 281 GLY N H2 sing N N 282 GLY CA C sing N N 283 GLY CA HA2 sing N N 284 GLY CA HA3 sing N N 285 GLY C O doub N N 286 GLY C OXT sing N N 287 GLY OXT HXT sing N N 288 HIS N CA sing N N 289 HIS N H sing N N 290 HIS N H2 sing N N 291 HIS CA C sing N N 292 HIS CA CB sing N N 293 HIS CA HA sing N N 294 HIS C O doub N N 295 HIS C OXT sing N N 296 HIS CB CG sing N N 297 HIS CB HB2 sing N N 298 HIS CB HB3 sing N N 299 HIS CG ND1 sing Y N 300 HIS CG CD2 doub Y N 301 HIS ND1 CE1 doub Y N 302 HIS ND1 HD1 sing N N 303 HIS CD2 NE2 sing Y N 304 HIS CD2 HD2 sing N N 305 HIS CE1 NE2 sing Y N 306 HIS CE1 HE1 sing N N 307 HIS NE2 HE2 sing N N 308 HIS OXT HXT sing N N 309 HOH O H1 sing N N 310 HOH O H2 sing N N 311 ILE N CA sing N N 312 ILE N H sing N N 313 ILE N H2 sing N N 314 ILE CA C sing N N 315 ILE CA CB sing N N 316 ILE CA HA sing N N 317 ILE C O doub N N 318 ILE C OXT sing N N 319 ILE CB CG1 sing N N 320 ILE CB CG2 sing N N 321 ILE CB HB sing N N 322 ILE CG1 CD1 sing N N 323 ILE CG1 HG12 sing N N 324 ILE CG1 HG13 sing N N 325 ILE CG2 HG21 sing N N 326 ILE CG2 HG22 sing N N 327 ILE CG2 HG23 sing N N 328 ILE CD1 HD11 sing N N 329 ILE CD1 HD12 sing N N 330 ILE CD1 HD13 sing N N 331 ILE OXT HXT sing N N 332 LEU N CA sing N N 333 LEU N H sing N N 334 LEU N H2 sing N N 335 LEU CA C sing N N 336 LEU CA CB sing N N 337 LEU CA HA sing N N 338 LEU C O doub N N 339 LEU C OXT sing N N 340 LEU CB CG sing N N 341 LEU CB HB2 sing N N 342 LEU CB HB3 sing N N 343 LEU CG CD1 sing N N 344 LEU CG CD2 sing N N 345 LEU CG HG sing N N 346 LEU CD1 HD11 sing N N 347 LEU CD1 HD12 sing N N 348 LEU CD1 HD13 sing N N 349 LEU CD2 HD21 sing N N 350 LEU CD2 HD22 sing N N 351 LEU CD2 HD23 sing N N 352 LEU OXT HXT sing N N 353 LYS N CA sing N N 354 LYS N H sing N N 355 LYS N H2 sing N N 356 LYS CA C sing N N 357 LYS CA CB sing N N 358 LYS CA HA sing N N 359 LYS C O doub N N 360 LYS C OXT sing N N 361 LYS CB CG sing N N 362 LYS CB HB2 sing N N 363 LYS CB HB3 sing N N 364 LYS CG CD sing N N 365 LYS CG HG2 sing N N 366 LYS CG HG3 sing N N 367 LYS CD CE sing N N 368 LYS CD HD2 sing N N 369 LYS CD HD3 sing N N 370 LYS CE NZ sing N N 371 LYS CE HE2 sing N N 372 LYS CE HE3 sing N N 373 LYS NZ HZ1 sing N N 374 LYS NZ HZ2 sing N N 375 LYS NZ HZ3 sing N N 376 LYS OXT HXT sing N N 377 MET N CA sing N N 378 MET N H sing N N 379 MET N H2 sing N N 380 MET CA C sing N N 381 MET CA CB sing N N 382 MET CA HA sing N N 383 MET C O doub N N 384 MET C OXT sing N N 385 MET CB CG sing N N 386 MET CB HB2 sing N N 387 MET CB HB3 sing N N 388 MET CG SD sing N N 389 MET CG HG2 sing N N 390 MET CG HG3 sing N N 391 MET SD CE sing N N 392 MET CE HE1 sing N N 393 MET CE HE2 sing N N 394 MET CE HE3 sing N N 395 MET OXT HXT sing N N 396 PHE N CA sing N N 397 PHE N H sing N N 398 PHE N H2 sing N N 399 PHE CA C sing N N 400 PHE CA CB sing N N 401 PHE CA HA sing N N 402 PHE C O doub N N 403 PHE C OXT sing N N 404 PHE CB CG sing N N 405 PHE CB HB2 sing N N 406 PHE CB HB3 sing N N 407 PHE CG CD1 doub Y N 408 PHE CG CD2 sing Y N 409 PHE CD1 CE1 sing Y N 410 PHE CD1 HD1 sing N N 411 PHE CD2 CE2 doub Y N 412 PHE CD2 HD2 sing N N 413 PHE CE1 CZ doub Y N 414 PHE CE1 HE1 sing N N 415 PHE CE2 CZ sing Y N 416 PHE CE2 HE2 sing N N 417 PHE CZ HZ sing N N 418 PHE OXT HXT sing N N 419 PRO N CA sing N N 420 PRO N CD sing N N 421 PRO N H sing N N 422 PRO CA C sing N N 423 PRO CA CB sing N N 424 PRO CA HA sing N N 425 PRO C O doub N N 426 PRO C OXT sing N N 427 PRO CB CG sing N N 428 PRO CB HB2 sing N N 429 PRO CB HB3 sing N N 430 PRO CG CD sing N N 431 PRO CG HG2 sing N N 432 PRO CG HG3 sing N N 433 PRO CD HD2 sing N N 434 PRO CD HD3 sing N N 435 PRO OXT HXT sing N N 436 SER N CA sing N N 437 SER N H sing N N 438 SER N H2 sing N N 439 SER CA C sing N N 440 SER CA CB sing N N 441 SER CA HA sing N N 442 SER C O doub N N 443 SER C OXT sing N N 444 SER CB OG sing N N 445 SER CB HB2 sing N N 446 SER CB HB3 sing N N 447 SER OG HG sing N N 448 SER OXT HXT sing N N 449 THR N CA sing N N 450 THR N H sing N N 451 THR N H2 sing N N 452 THR CA C sing N N 453 THR CA CB sing N N 454 THR CA HA sing N N 455 THR C O doub N N 456 THR C OXT sing N N 457 THR CB OG1 sing N N 458 THR CB CG2 sing N N 459 THR CB HB sing N N 460 THR OG1 HG1 sing N N 461 THR CG2 HG21 sing N N 462 THR CG2 HG22 sing N N 463 THR CG2 HG23 sing N N 464 THR OXT HXT sing N N 465 TRP N CA sing N N 466 TRP N H sing N N 467 TRP N H2 sing N N 468 TRP CA C sing N N 469 TRP CA CB sing N N 470 TRP CA HA sing N N 471 TRP C O doub N N 472 TRP C OXT sing N N 473 TRP CB CG sing N N 474 TRP CB HB2 sing N N 475 TRP CB HB3 sing N N 476 TRP CG CD1 doub Y N 477 TRP CG CD2 sing Y N 478 TRP CD1 NE1 sing Y N 479 TRP CD1 HD1 sing N N 480 TRP CD2 CE2 doub Y N 481 TRP CD2 CE3 sing Y N 482 TRP NE1 CE2 sing Y N 483 TRP NE1 HE1 sing N N 484 TRP CE2 CZ2 sing Y N 485 TRP CE3 CZ3 doub Y N 486 TRP CE3 HE3 sing N N 487 TRP CZ2 CH2 doub Y N 488 TRP CZ2 HZ2 sing N N 489 TRP CZ3 CH2 sing Y N 490 TRP CZ3 HZ3 sing N N 491 TRP CH2 HH2 sing N N 492 TRP OXT HXT sing N N 493 TYR N CA sing N N 494 TYR N H sing N N 495 TYR N H2 sing N N 496 TYR CA C sing N N 497 TYR CA CB sing N N 498 TYR CA HA sing N N 499 TYR C O doub N N 500 TYR C OXT sing N N 501 TYR CB CG sing N N 502 TYR CB HB2 sing N N 503 TYR CB HB3 sing N N 504 TYR CG CD1 doub Y N 505 TYR CG CD2 sing Y N 506 TYR CD1 CE1 sing Y N 507 TYR CD1 HD1 sing N N 508 TYR CD2 CE2 doub Y N 509 TYR CD2 HD2 sing N N 510 TYR CE1 CZ doub Y N 511 TYR CE1 HE1 sing N N 512 TYR CE2 CZ sing Y N 513 TYR CE2 HE2 sing N N 514 TYR CZ OH sing N N 515 TYR OH HH sing N N 516 TYR OXT HXT sing N N 517 U OP3 P sing N N 518 U OP3 HOP3 sing N N 519 U P OP1 doub N N 520 U P OP2 sing N N 521 U P "O5'" sing N N 522 U OP2 HOP2 sing N N 523 U "O5'" "C5'" sing N N 524 U "C5'" "C4'" sing N N 525 U "C5'" "H5'" sing N N 526 U "C5'" "H5''" sing N N 527 U "C4'" "O4'" sing N N 528 U "C4'" "C3'" sing N N 529 U "C4'" "H4'" sing N N 530 U "O4'" "C1'" sing N N 531 U "C3'" "O3'" sing N N 532 U "C3'" "C2'" sing N N 533 U "C3'" "H3'" sing N N 534 U "O3'" "HO3'" sing N N 535 U "C2'" "O2'" sing N N 536 U "C2'" "C1'" sing N N 537 U "C2'" "H2'" sing N N 538 U "O2'" "HO2'" sing N N 539 U "C1'" N1 sing N N 540 U "C1'" "H1'" sing N N 541 U N1 C2 sing N N 542 U N1 C6 sing N N 543 U C2 O2 doub N N 544 U C2 N3 sing N N 545 U N3 C4 sing N N 546 U N3 H3 sing N N 547 U C4 O4 doub N N 548 U C4 C5 sing N N 549 U C5 C6 doub N N 550 U C5 H5 sing N N 551 U C6 H6 sing N N 552 VAL N CA sing N N 553 VAL N H sing N N 554 VAL N H2 sing N N 555 VAL CA C sing N N 556 VAL CA CB sing N N 557 VAL CA HA sing N N 558 VAL C O doub N N 559 VAL C OXT sing N N 560 VAL CB CG1 sing N N 561 VAL CB CG2 sing N N 562 VAL CB HB sing N N 563 VAL CG1 HG11 sing N N 564 VAL CG1 HG12 sing N N 565 VAL CG1 HG13 sing N N 566 VAL CG2 HG21 sing N N 567 VAL CG2 HG22 sing N N 568 VAL CG2 HG23 sing N N 569 VAL OXT HXT sing N N 570 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3NCU 'a-form double helix' 3NCU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C GDP 1 1_555 D C 12 1_555 0.001 -0.095 -0.169 -12.571 -2.982 -7.657 1 C_GDP1:C12_D C 1 ? D 12 ? 19 1 1 C A 2 1_555 D U 11 1_555 -0.140 -0.066 0.868 8.213 -18.487 4.995 2 C_A2:U11_D C 2 ? D 11 ? 20 1 1 C C 3 1_555 D G 10 1_555 0.587 -0.010 0.258 3.221 -17.232 1.053 3 C_C3:G10_D C 3 ? D 10 ? 19 1 1 C G 4 1_555 D C 9 1_555 -0.029 -0.018 0.327 1.010 -9.605 1.808 4 C_G4:C9_D C 4 ? D 9 ? 19 1 1 C C 5 1_555 D G 8 1_555 0.987 -0.130 0.669 -3.997 1.416 5.224 5 C_C5:G8_D C 5 ? D 8 ? 19 1 1 C U 6 1_555 D A 7 1_555 -0.165 -0.200 -0.362 12.303 -11.346 -0.499 6 C_U6:A7_D C 6 ? D 7 ? 20 1 1 C A 7 1_555 D U 6 1_555 0.896 -0.284 0.552 11.435 -3.610 -5.365 7 C_A7:U6_D C 7 ? D 6 ? 20 1 1 C G 8 1_555 D C 5 1_555 0.211 0.030 0.589 7.223 4.762 5.253 8 C_G8:C5_D C 8 ? D 5 ? 19 1 1 C C 9 1_555 D G 4 1_555 -0.167 -0.032 0.044 10.107 -11.256 6.731 9 C_C9:G4_D C 9 ? D 4 ? 19 1 1 C G 10 1_555 D C 3 1_555 0.298 -0.129 0.341 -10.434 -17.699 1.295 10 C_G10:C3_D C 10 ? D 3 ? 19 1 1 C U 11 1_555 D A 2 1_555 -0.025 -0.080 0.488 -7.936 -13.332 3.201 11 C_U11:A2_D C 11 ? D 2 ? 20 1 1 C C 12 1_555 D GDP 1 1_555 -0.280 0.251 0.112 4.693 -4.505 -3.320 12 C_C12:GDP1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C GDP 1 1_555 D C 12 1_555 C A 2 1_555 D U 11 1_555 0.346 -0.987 2.670 -5.882 3.926 33.284 -2.183 -1.335 2.446 6.760 10.127 34.006 1 CC_GDP1A2:U11C12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C A 2 1_555 D U 11 1_555 C C 3 1_555 D G 10 1_555 0.538 -1.368 3.189 5.970 7.638 34.560 -3.259 -0.065 2.882 12.554 -9.812 35.854 2 CC_A2C3:G10U11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C C 3 1_555 D G 10 1_555 C G 4 1_555 D C 9 1_555 0.176 -1.913 3.108 0.135 3.303 27.394 -4.750 -0.339 2.863 6.942 -0.285 27.589 3 CC_C3G4:C9G10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C G 4 1_555 D C 9 1_555 C C 5 1_555 D G 8 1_555 0.444 -1.906 3.295 -1.236 0.593 37.034 -3.079 -0.864 3.250 0.933 1.945 37.059 4 CC_G4C5:G8C9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C C 5 1_555 D G 8 1_555 C U 6 1_555 D A 7 1_555 -0.697 -1.449 2.677 11.185 0.621 26.976 -2.982 3.271 2.187 1.264 -22.769 29.169 5 CC_C5U6:A7G8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C U 6 1_555 D A 7 1_555 C A 7 1_555 D U 6 1_555 -0.133 -1.472 3.237 -5.571 8.543 38.575 -3.095 -0.414 2.851 12.664 8.258 39.851 6 CC_U6A7:U6A7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C A 7 1_555 D U 6 1_555 C G 8 1_555 D C 5 1_555 0.466 -2.036 3.257 -1.811 1.017 25.484 -4.883 -1.556 3.135 2.300 4.096 25.567 7 CC_A7G8:C5U6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C G 8 1_555 D C 5 1_555 C C 9 1_555 D G 4 1_555 0.054 -1.984 3.155 3.598 -0.342 28.969 -3.865 0.652 3.161 -0.681 -7.156 29.189 8 CC_G8C9:G4C5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C C 9 1_555 D G 4 1_555 C G 10 1_555 D C 3 1_555 -0.576 -1.748 3.538 -3.728 10.427 34.292 -4.339 0.392 2.944 17.139 6.127 35.984 9 CC_C9G10:C3G4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C G 10 1_555 D C 3 1_555 C U 11 1_555 D A 2 1_555 -1.148 -1.579 2.967 -5.987 7.581 29.360 -4.268 1.129 2.663 14.471 11.429 30.876 10 CC_G10U11:A2C3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C U 11 1_555 D A 2 1_555 C C 12 1_555 D GDP 1 1_555 -0.292 -1.114 2.793 0.318 5.453 34.721 -2.520 0.523 2.591 9.067 -0.529 35.135 11 CC_U11C12:GDP1A2_DD C 11 ? D 2 ? C 12 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2QFB _pdbx_initial_refinement_model.details ? #