HEADER TRANSPORT PROTEIN 06-JUN-10 3ND2 TITLE STRUCTURE OF YEAST IMPORTIN-BETA (KAP95P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT BETA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KARYOPHERIN-BETA, KARYOPHERIN SUBUNIT BETA-1, KARYOPHERIN- COMPND 5 95, IMPORTIN-95; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS IMPORTIN, KARYOPHERIN, NUCLEAR IMPORT, RECEPTOR, NUCLEAR TRANSPORT, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.K.FORWOOD,B.KOBE REVDAT 3 01-NOV-23 3ND2 1 REMARK REVDAT 2 29-DEC-10 3ND2 1 JRNL REVDAT 1 07-JUL-10 3ND2 0 JRNL AUTH J.K.FORWOOD,A.LANGE,U.ZACHARIAE,M.MARFORI,C.PREAST, JRNL AUTH 2 H.GRUBMULLER,M.STEWART,A.H.CORBETT,B.KOBE JRNL TITL QUANTITATIVE STRUCTURAL ANALYSIS OF IMPORTIN-BETA JRNL TITL 2 FLEXIBILITY: PARADIGM FOR SOLENOID PROTEIN STRUCTURES JRNL REF STRUCTURE V. 18 1171 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20826343 JRNL DOI 10.1016/J.STR.2010.06.015 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 35991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1901 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6767 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9200 ; 1.243 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 860 ; 5.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;39.526 ;25.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1162 ;18.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.706 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1075 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5096 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3277 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4806 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4431 ; 0.431 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6943 ; 0.783 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2638 ; 1.146 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2257 ; 1.846 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9740 -6.6520 34.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.4891 T22: 0.1001 REMARK 3 T33: -0.1857 T12: 0.0188 REMARK 3 T13: 0.0539 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.2007 L22: 5.5596 REMARK 3 L33: 3.3995 L12: 2.4600 REMARK 3 L13: -1.8342 L23: -0.9030 REMARK 3 S TENSOR REMARK 3 S11: -0.3696 S12: 0.2556 S13: -0.2607 REMARK 3 S21: -0.5869 S22: 0.2207 S23: -0.0594 REMARK 3 S31: 0.4675 S32: 0.0734 S33: 0.1489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7720 24.0460 29.7500 REMARK 3 T TENSOR REMARK 3 T11: 0.4812 T22: 0.0347 REMARK 3 T33: -0.1268 T12: -0.0357 REMARK 3 T13: 0.0201 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.0728 L22: 2.4438 REMARK 3 L33: 3.5957 L12: -0.7992 REMARK 3 L13: 0.1803 L23: -2.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.0496 S13: 0.0232 REMARK 3 S21: 0.2327 S22: -0.0333 S23: 0.1019 REMARK 3 S31: -0.4045 S32: 0.1012 S33: -0.0740 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6020 33.2690 0.6380 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.0029 REMARK 3 T33: -0.0864 T12: -0.0046 REMARK 3 T13: 0.0424 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.2800 L22: 2.7196 REMARK 3 L33: 3.7771 L12: -1.1746 REMARK 3 L13: 0.1426 L23: 0.6008 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.0579 S13: 0.0359 REMARK 3 S21: 0.0253 S22: 0.0697 S23: -0.1010 REMARK 3 S31: -0.1958 S32: 0.0398 S33: -0.0612 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 439 A 595 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4930 10.1180 -15.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.1284 REMARK 3 T33: -0.0572 T12: 0.0119 REMARK 3 T13: -0.0013 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.4558 L22: 4.2053 REMARK 3 L33: 1.5344 L12: -0.2792 REMARK 3 L13: -0.4811 L23: 0.2475 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.0810 S13: -0.0257 REMARK 3 S21: -0.1803 S22: 0.0072 S23: 0.3190 REMARK 3 S31: -0.0166 S32: -0.1246 S33: 0.0655 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 596 A 699 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5970 -12.8760 -3.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.3480 T22: 0.0554 REMARK 3 T33: -0.0972 T12: 0.0020 REMARK 3 T13: 0.0697 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 5.5474 L22: 3.3516 REMARK 3 L33: 5.7977 L12: 1.3332 REMARK 3 L13: -3.9355 L23: -0.9772 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: -0.5395 S13: -0.0579 REMARK 3 S21: -0.0204 S22: 0.0164 S23: -0.1238 REMARK 3 S31: 0.2500 S32: 0.4300 S33: 0.0580 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 700 A 764 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6210 -5.1430 10.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.3562 T22: 0.1281 REMARK 3 T33: -0.0377 T12: -0.0384 REMARK 3 T13: 0.0074 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 3.6308 L22: 3.5177 REMARK 3 L33: 3.3042 L12: -0.4982 REMARK 3 L13: -0.2593 L23: 1.4049 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: -0.2731 S13: 0.4495 REMARK 3 S21: 0.1033 S22: 0.2163 S23: -0.4222 REMARK 3 S31: -0.0057 S32: 0.3666 S33: -0.1638 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 765 A 861 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4810 5.3820 8.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.4199 T22: 0.0220 REMARK 3 T33: -0.1402 T12: 0.0401 REMARK 3 T13: -0.0150 T23: -0.0981 REMARK 3 L TENSOR REMARK 3 L11: 6.4433 L22: 6.8070 REMARK 3 L33: 4.1496 L12: -3.1539 REMARK 3 L13: 1.2094 L23: -0.5819 REMARK 3 S TENSOR REMARK 3 S11: -0.2749 S12: -0.3953 S13: 0.6572 REMARK 3 S21: -0.0957 S22: 0.0159 S23: -0.1721 REMARK 3 S31: -0.6313 S32: -0.3050 S33: 0.2590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ND2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BKU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1M MES PH 6.5, 20MM REMARK 280 MGCL2, 125MM NACL, 12% MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.13600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 19 CG GLN A 19 CD 0.388 REMARK 500 GLN A 19 CD GLN A 19 NE2 0.324 REMARK 500 LEU A 23 CG LEU A 23 CD2 0.289 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 19 CG - CD - OE1 ANGL. DEV. = 25.5 DEGREES REMARK 500 GLN A 19 CG - CD - NE2 ANGL. DEV. = -23.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 14 -38.82 -141.15 REMARK 500 ALA A 266 -38.24 -146.61 REMARK 500 ASP A 343 -29.90 60.75 REMARK 500 ASN A 512 40.67 -106.09 REMARK 500 PHE A 514 18.15 59.68 REMARK 500 PRO A 588 20.70 -72.25 REMARK 500 ASP A 610 49.61 -95.73 REMARK 500 GLU A 671 -52.49 15.61 REMARK 500 LEU A 792 -62.75 -104.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 3ND2 A 1 861 UNP Q06142 IMB1_YEAST 1 861 SEQRES 1 A 861 MET SER THR ALA GLU PHE ALA GLN LEU LEU GLU ASN SER SEQRES 2 A 861 ILE LEU SER PRO ASP GLN ASN ILE ARG LEU THR SER GLU SEQRES 3 A 861 THR GLN LEU LYS LYS LEU SER ASN ASP ASN PHE LEU GLN SEQRES 4 A 861 PHE ALA GLY LEU SER SER GLN VAL LEU ILE ASP GLU ASN SEQRES 5 A 861 THR LYS LEU GLU GLY ARG ILE LEU ALA ALA LEU THR LEU SEQRES 6 A 861 LYS ASN GLU LEU VAL SER LYS ASP SER VAL LYS THR GLN SEQRES 7 A 861 GLN PHE ALA GLN ARG TRP ILE THR GLN VAL SER PRO GLU SEQRES 8 A 861 ALA LYS ASN GLN ILE LYS THR ASN ALA LEU THR ALA LEU SEQRES 9 A 861 VAL SER ILE GLU PRO ARG ILE ALA ASN ALA ALA ALA GLN SEQRES 10 A 861 LEU ILE ALA ALA ILE ALA ASP ILE GLU LEU PRO HIS GLY SEQRES 11 A 861 ALA TRP PRO GLU LEU MET LYS ILE MET VAL ASP ASN THR SEQRES 12 A 861 GLY ALA GLU GLN PRO GLU ASN VAL LYS ARG ALA SER LEU SEQRES 13 A 861 LEU ALA LEU GLY TYR MET CYS GLU SER ALA ASP PRO GLN SEQRES 14 A 861 SER GLN ALA LEU VAL SER SER SER ASN ASN ILE LEU ILE SEQRES 15 A 861 ALA ILE VAL GLN GLY ALA GLN SER THR GLU THR SER LYS SEQRES 16 A 861 ALA VAL ARG LEU ALA ALA LEU ASN ALA LEU ALA ASP SER SEQRES 17 A 861 LEU ILE PHE ILE LYS ASN ASN MET GLU ARG GLU GLY GLU SEQRES 18 A 861 ARG ASN TYR LEU MET GLN VAL VAL CYS GLU ALA THR GLN SEQRES 19 A 861 ALA GLU ASP ILE GLU VAL GLN ALA ALA ALA PHE GLY CYS SEQRES 20 A 861 LEU CYS LYS ILE MET SER LEU TYR TYR THR PHE MET LYS SEQRES 21 A 861 PRO TYR MET GLU GLN ALA LEU TYR ALA LEU THR ILE ALA SEQRES 22 A 861 THR MET LYS SER PRO ASN ASP LYS VAL ALA SER MET THR SEQRES 23 A 861 VAL GLU PHE TRP SER THR ILE CYS GLU GLU GLU ILE ASP SEQRES 24 A 861 ILE ALA TYR GLU LEU ALA GLN PHE PRO GLN SER PRO LEU SEQRES 25 A 861 GLN SER TYR ASN PHE ALA LEU SER SER ILE LYS ASP VAL SEQRES 26 A 861 VAL PRO ASN LEU LEU ASN LEU LEU THR ARG GLN ASN GLU SEQRES 27 A 861 ASP PRO GLU ASP ASP ASP TRP ASN VAL SER MET SER ALA SEQRES 28 A 861 GLY ALA CYS LEU GLN LEU PHE ALA GLN ASN CYS GLY ASN SEQRES 29 A 861 HIS ILE LEU GLU PRO VAL LEU GLU PHE VAL GLU GLN ASN SEQRES 30 A 861 ILE THR ALA ASP ASN TRP ARG ASN ARG GLU ALA ALA VAL SEQRES 31 A 861 MET ALA PHE GLY SER ILE MET ASP GLY PRO ASP LYS VAL SEQRES 32 A 861 GLN ARG THR TYR TYR VAL HIS GLN ALA LEU PRO SER ILE SEQRES 33 A 861 LEU ASN LEU MET ASN ASP GLN SER LEU GLN VAL LYS GLU SEQRES 34 A 861 THR THR ALA TRP CYS ILE GLY ARG ILE ALA ASP SER VAL SEQRES 35 A 861 ALA GLU SER ILE ASP PRO GLN GLN HIS LEU PRO GLY VAL SEQRES 36 A 861 VAL GLN ALA CYS LEU ILE GLY LEU GLN ASP HIS PRO LYS SEQRES 37 A 861 VAL ALA THR ASN CYS SER TRP THR ILE ILE ASN LEU VAL SEQRES 38 A 861 GLU GLN LEU ALA GLU ALA THR PRO SER PRO ILE TYR ASN SEQRES 39 A 861 PHE TYR PRO ALA LEU VAL ASP GLY LEU ILE GLY ALA ALA SEQRES 40 A 861 ASN ARG ILE ASP ASN GLU PHE ASN ALA ARG ALA SER ALA SEQRES 41 A 861 PHE SER ALA LEU THR THR MET VAL GLU TYR ALA THR ASP SEQRES 42 A 861 THR VAL ALA GLU THR SER ALA SER ILE SER THR PHE VAL SEQRES 43 A 861 MET ASP LYS LEU GLY GLN THR MET SER VAL ASP GLU ASN SEQRES 44 A 861 GLN LEU THR LEU GLU ASP ALA GLN SER LEU GLN GLU LEU SEQRES 45 A 861 GLN SER ASN ILE LEU THR VAL LEU ALA ALA VAL ILE ARG SEQRES 46 A 861 LYS SER PRO SER SER VAL GLU PRO VAL ALA ASP MET LEU SEQRES 47 A 861 MET GLY LEU PHE PHE ARG LEU LEU GLU LYS LYS ASP SER SEQRES 48 A 861 ALA PHE ILE GLU ASP ASP VAL PHE TYR ALA ILE SER ALA SEQRES 49 A 861 LEU ALA ALA SER LEU GLY LYS GLY PHE GLU LYS TYR LEU SEQRES 50 A 861 GLU THR PHE SER PRO TYR LEU LEU LYS ALA LEU ASN GLN SEQRES 51 A 861 VAL ASP SER PRO VAL SER ILE THR ALA VAL GLY PHE ILE SEQRES 52 A 861 ALA ASP ILE SER ASN SER LEU GLU GLU ASP PHE ARG ARG SEQRES 53 A 861 TYR SER ASP ALA MET MET ASN VAL LEU ALA GLN MET ILE SEQRES 54 A 861 SER ASN PRO ASN ALA ARG ARG GLU LEU LYS PRO ALA VAL SEQRES 55 A 861 LEU SER VAL PHE GLY ASP ILE ALA SER ASN ILE GLY ALA SEQRES 56 A 861 ASP PHE ILE PRO TYR LEU ASN ASP ILE MET ALA LEU CYS SEQRES 57 A 861 VAL ALA ALA GLN ASN THR LYS PRO GLU ASN GLY THR LEU SEQRES 58 A 861 GLU ALA LEU ASP TYR GLN ILE LYS VAL LEU GLU ALA VAL SEQRES 59 A 861 LEU ASP ALA TYR VAL GLY ILE VAL ALA GLY LEU HIS ASP SEQRES 60 A 861 LYS PRO GLU ALA LEU PHE PRO TYR VAL GLY THR ILE PHE SEQRES 61 A 861 GLN PHE ILE ALA GLN VAL ALA GLU ASP PRO GLN LEU TYR SEQRES 62 A 861 SER GLU ASP ALA THR SER ARG ALA ALA VAL GLY LEU ILE SEQRES 63 A 861 GLY ASP ILE ALA ALA MET PHE PRO ASP GLY SER ILE LYS SEQRES 64 A 861 GLN PHE TYR GLY GLN ASP TRP VAL ILE ASP TYR ILE LYS SEQRES 65 A 861 ARG THR ARG SER GLY GLN LEU PHE SER GLN ALA THR LYS SEQRES 66 A 861 ASP THR ALA ARG TRP ALA ARG GLU GLN GLN LYS ARG GLN SEQRES 67 A 861 LEU SER LEU FORMUL 2 HOH *106(H2 O) HELIX 1 1 SER A 2 SER A 16 1 15 HELIX 2 2 ASP A 18 ASN A 36 1 19 HELIX 3 3 ASN A 36 ILE A 49 1 14 HELIX 4 4 LYS A 54 ASN A 67 1 14 HELIX 5 5 ASP A 73 VAL A 88 1 16 HELIX 6 6 SER A 89 VAL A 105 1 17 HELIX 7 7 GLU A 108 LEU A 127 1 20 HELIX 8 8 PRO A 128 GLY A 130 5 3 HELIX 9 9 PRO A 133 THR A 143 1 11 HELIX 10 10 PRO A 148 ALA A 166 1 19 HELIX 11 11 GLN A 171 SER A 176 1 6 HELIX 12 12 SER A 176 GLN A 189 1 14 HELIX 13 13 SER A 194 LEU A 209 1 16 HELIX 14 14 ILE A 212 GLU A 217 1 6 HELIX 15 15 ARG A 218 GLN A 234 1 17 HELIX 16 16 ASP A 237 TYR A 256 1 20 HELIX 17 17 MET A 259 ALA A 266 1 8 HELIX 18 18 ALA A 266 THR A 274 1 9 HELIX 19 19 MET A 275 SER A 277 5 3 HELIX 20 20 ASN A 279 PHE A 307 1 29 HELIX 21 21 ASN A 316 LEU A 333 1 18 HELIX 22 22 ASN A 346 GLY A 363 1 18 HELIX 23 23 ILE A 366 ILE A 378 1 13 HELIX 24 24 ASN A 382 ILE A 396 1 15 HELIX 25 25 ASP A 401 LEU A 419 1 19 HELIX 26 26 MET A 420 ASP A 422 5 3 HELIX 27 27 SER A 424 VAL A 442 1 19 HELIX 28 28 ALA A 443 ILE A 446 5 4 HELIX 29 29 HIS A 451 LEU A 463 1 13 HELIX 30 30 HIS A 466 ALA A 485 1 20 HELIX 31 31 PRO A 491 ASN A 494 5 4 HELIX 32 32 PHE A 495 ASN A 508 1 14 HELIX 33 33 ASN A 512 PHE A 514 5 3 HELIX 34 34 ASN A 515 ALA A 531 1 17 HELIX 35 35 THR A 532 THR A 534 5 3 HELIX 36 36 VAL A 535 MET A 554 1 20 HELIX 37 37 SER A 555 VAL A 556 5 2 HELIX 38 38 ASP A 557 LEU A 561 5 5 HELIX 39 39 THR A 562 SER A 587 1 26 HELIX 40 40 SER A 590 LYS A 608 1 19 HELIX 41 41 ASP A 610 GLY A 630 1 21 HELIX 42 42 LYS A 631 LYS A 635 5 5 HELIX 43 43 TYR A 636 ASN A 649 1 14 HELIX 44 44 PRO A 654 GLU A 671 1 18 HELIX 45 45 PHE A 674 ASN A 691 1 18 HELIX 46 46 GLU A 697 GLY A 714 1 18 HELIX 47 47 ALA A 715 PRO A 719 5 5 HELIX 48 48 TYR A 720 ASN A 733 1 14 HELIX 49 49 THR A 740 HIS A 766 1 27 HELIX 50 50 LYS A 768 PHE A 773 1 6 HELIX 51 51 TYR A 775 ASP A 789 1 15 HELIX 52 52 ASP A 789 SER A 794 1 6 HELIX 53 53 GLU A 795 PHE A 813 1 19 HELIX 54 54 ILE A 818 TYR A 822 5 5 HELIX 55 55 GLN A 824 GLY A 837 1 14 HELIX 56 56 SER A 841 LEU A 861 1 21 CRYST1 58.835 128.272 69.050 90.00 102.68 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016997 0.000000 0.003823 0.00000 SCALE2 0.000000 0.007796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014844 0.00000