HEADER FLUORESCENT PROTEIN 08-JUN-10 3NED TITLE MROUGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAMCHERRY1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DISCOSOMA SP.; SOURCE 3 ORGANISM_COMMON: SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 86600; SOURCE 5 GENE: PAMCHERRY, PAMCHERRY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS RFP, MCHERRY, BETA BARREL, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.L.MAYO,R.A.CHICA,M.M.MOORE REVDAT 6 15-NOV-23 3NED 1 REMARK SEQADV LINK ATOM REVDAT 5 15-NOV-17 3NED 1 JRNL REVDAT 4 08-NOV-17 3NED 1 REMARK REVDAT 3 04-MAR-15 3NED 1 LINK REVDAT 2 08-JAN-14 3NED 1 JRNL VERSN REVDAT 1 24-NOV-10 3NED 0 JRNL AUTH R.A.CHICA,M.M.MOORE,B.D.ALLEN,S.L.MAYO JRNL TITL GENERATION OF LONGER EMISSION WAVELENGTH RED FLUORESCENT JRNL TITL 2 PROTEINS USING COMPUTATIONALLY DESIGNED LIBRARIES. JRNL REF PROC. NATL. ACAD. SCI. V. 107 20257 2010 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 21059931 JRNL DOI 10.1073/PNAS.1013910107 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 135356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 290 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.017 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2217 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2089 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3044 ; 2.431 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4846 ; 3.500 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 7.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;31.837 ;24.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;13.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2608 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 1.706 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 525 ; 1.045 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2147 ; 2.496 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 906 ; 3.588 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 4.979 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4306 ; 1.861 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 473 ;12.295 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4204 ; 6.829 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000059723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : ACORN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135356 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ACORN REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM ACETATE, 100 MM BIS REMARK 280 -TRIS, PH 6.5, AND 25% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.38000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 GLY A -4 REMARK 465 VAL A -3 REMARK 465 SER A -2 REMARK 465 LYS A -1 REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 NRQ A 67 SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 2 CG CD OE1 OE2 REMARK 480 LYS A 168 CE NZ REMARK 480 LYS A 185 CG CD CE NZ REMARK 480 LYS A 231 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C3 EYG A 67 N SER A 69 1.34 REMARK 500 O13 EYG A 67 O HOH A 279 1.66 REMARK 500 ND2 ASN A 128 O HOH A 261 1.69 REMARK 500 OG1 THR A 180 O HOH A 370 1.87 REMARK 500 OH TYR A 151 O HOH A 593 1.95 REMARK 500 OD1 ASP A 132 O HOH A 402 2.06 REMARK 500 CD LYS A 168 O HOH A 425 2.06 REMARK 500 NH1 ARG A 164 O HOH A 421 2.06 REMARK 500 O HOH A 347 O HOH A 375 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 65 CA PHE A 65 C 0.353 REMARK 500 PHE A 65 CA PHE A 65 C -0.259 REMARK 500 GLU A 89 CD GLU A 89 OE1 0.071 REMARK 500 CYS A 146 CB CYS A 146 SG 0.138 REMARK 500 CYS A 146 CB CYS A 146 SG -0.173 REMARK 500 SER A 147 CB SER A 147 OG -0.081 REMARK 500 TYR A 181 CB TYR A 181 CG -0.094 REMARK 500 LYS A 231 CE LYS A 231 NZ 0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLY A 90 C - N - CA ANGL. DEV. = 13.6 DEGREES REMARK 500 LYS A 92 CD - CE - NZ ANGL. DEV. = -17.4 DEGREES REMARK 500 LYS A 121 CD - CE - NZ ANGL. DEV. = 24.3 DEGREES REMARK 500 ARG A 125 CG - CD - NE ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU A 165 CB - CG - CD2 ANGL. DEV. = -20.7 DEGREES REMARK 500 ASP A 174 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 181 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 37.94 -94.32 REMARK 500 TYR A 72 41.26 -105.02 REMARK 500 MET A 141 51.57 -147.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 234 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 O REMARK 620 2 HOH A 489 O 108.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 235 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 41 OG1 REMARK 620 2 HOH A 631 O 77.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 232 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 244 O REMARK 620 2 HOH A 600 O 118.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 235 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MET 66, TYR 68, AND GLY 69 CIRCULARIZED INTO ONE CHROMOPHORE DBREF 3NED A -3 231 UNP D1MPT3 D1MPT3_DISSP 2 236 SEQADV 3NED MET A -12 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED GLY A -11 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED HIS A -10 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED HIS A -9 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED HIS A -8 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED HIS A -7 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED HIS A -6 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED HIS A -5 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED GLY A -4 UNP D1MPT3 EXPRESSION TAG SEQADV 3NED THR A 16 UNP D1MPT3 VAL 21 ENGINEERED MUTATION SEQADV 3NED GLU A 26 UNP D1MPT3 VAL 31 ENGINEERED MUTATION SEQADV 3NED ALA A 57 UNP D1MPT3 THR 62 ENGINEERED MUTATION SEQADV 3NED NRQ A 67 UNP D1MPT3 MET 71 CHROMOPHORE SEQADV 3NED NRQ A 67 UNP D1MPT3 TYR 72 CHROMOPHORE SEQADV 3NED NRQ A 67 UNP D1MPT3 GLY 73 CHROMOPHORE SEQADV 3NED LYS A 70 UNP D1MPT3 ASN 75 ENGINEERED MUTATION SEQADV 3NED LEU A 83 UNP D1MPT3 PHE 88 ENGINEERED MUTATION SEQADV 3NED ASN A 98 UNP D1MPT3 LYS 103 ENGINEERED MUTATION SEQADV 3NED CYS A 146 UNP D1MPT3 LEU 151 ENGINEERED MUTATION SEQADV 3NED MET A 161 UNP D1MPT3 VAL 166 ENGINEERED MUTATION SEQADV 3NED MET A 163 UNP D1MPT3 PRO 168 ENGINEERED MUTATION SEQADV 3NED LEU A 165 UNP D1MPT3 VAL 170 ENGINEERED MUTATION SEQADV 3NED THR A 195 UNP D1MPT3 VAL 200 ENGINEERED MUTATION SEQADV 3NED THR A 197 UNP D1MPT3 ARG 202 ENGINEERED MUTATION SEQADV 3NED ASN A 217 UNP D1MPT3 ALA 222 ENGINEERED MUTATION SEQRES 1 A 242 MET GLY HIS HIS HIS HIS HIS HIS GLY VAL SER LYS GLY SEQRES 2 A 242 GLU GLU ASP ASN MET ALA ILE ILE LYS GLU PHE MET ARG SEQRES 3 A 242 PHE LYS THR HIS MET GLU GLY SER VAL ASN GLY HIS GLU SEQRES 4 A 242 PHE GLU ILE GLU GLY GLU GLY GLU GLY ARG PRO TYR GLU SEQRES 5 A 242 GLY THR GLN THR ALA LYS LEU LYS VAL THR LYS GLY GLY SEQRES 6 A 242 PRO LEU PRO PHE ALA TRP ASP ILE LEU SER PRO GLN PHE SEQRES 7 A 242 NRQ SER LYS ALA TYR VAL LYS HIS PRO ALA ASP ILE PRO SEQRES 8 A 242 ASP TYR LEU LYS LEU SER PHE PRO GLU GLY PHE LYS TRP SEQRES 9 A 242 GLU ARG VAL MET ASN PHE GLU ASP GLY GLY VAL VAL THR SEQRES 10 A 242 VAL THR GLN ASP SER SER LEU GLN ASP GLY GLU PHE ILE SEQRES 11 A 242 TYR LYS VAL LYS LEU ARG GLY THR ASN PHE PRO SER ASP SEQRES 12 A 242 GLY PRO VAL MET GLN LYS LYS THR MET GLY TRP GLU ALA SEQRES 13 A 242 CYS SER GLU ARG MET TYR PRO GLU ASP GLY ALA LEU LYS SEQRES 14 A 242 GLY GLU MET LYS MET ARG LEU LYS LEU LYS ASP GLY GLY SEQRES 15 A 242 HIS TYR ASP ALA GLU VAL LYS THR THR TYR LYS ALA LYS SEQRES 16 A 242 LYS PRO VAL GLN LEU PRO GLY ALA TYR ASN THR ASN THR SEQRES 17 A 242 LYS LEU ASP ILE THR SER HIS ASN GLU ASP TYR THR ILE SEQRES 18 A 242 VAL GLU GLN TYR GLU ARG ASN GLU GLY ARG HIS SER THR SEQRES 19 A 242 GLY GLY MET ASP GLU LEU TYR LYS MODRES 3NED NRQ A 67 MET CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED NRQ A 67 TYR CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED NRQ A 67 GLY CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED CH6 A 67 MET CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED CH6 A 67 TYR CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED CH6 A 67 GLY CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED EYG A 67 MET CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED EYG A 67 TYR CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3NED EYG A 67 GLY CIRCULARIZED TRI-PEPTIDE CHROMOPHORE HET NRQ A 67 23 HET CH6 A 67 23 HET EYG A 67 22 HET NA A 232 1 HET ACT A 233 4 HET NA A 234 1 HET NA A 235 1 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM CH6 {(4Z)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-4-[(4- HETNAM 2 CH6 HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H- HETNAM 3 CH6 IMIDAZOL-1-YL}ACETIC ACID HETNAM EYG {(2R,4Z)-2-[(1R)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-2- HETNAM 2 EYG HYDROXY-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5- HETNAM 3 EYG OXOIMIDAZOLIDIN-1-YL}ACETIC ACID HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) HETSYN CH6 CHROMOPHORE (MET-TYR-GLY) HETSYN EYG CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ C16 H17 N3 O4 S FORMUL 1 CH6 C16 H19 N3 O4 S FORMUL 1 EYG C16 H21 N3 O5 S FORMUL 2 NA 3(NA 1+) FORMUL 3 ACT C2 H3 O2 1- FORMUL 6 HOH *414(H2 O) HELIX 1 1 GLU A 1 ILE A 8 1 8 HELIX 2 2 ALA A 57 PHE A 65 5 9 HELIX 3 3 SER A 69 VAL A 73 5 5 HELIX 4 4 ASP A 81 SER A 86 1 6 HELIX 5 5 GLY A 224 GLU A 228 5 5 SHEET 1 A13 THR A 140 TRP A 143 0 SHEET 2 A13 ALA A 156 LEU A 167 -1 O LYS A 166 N GLY A 142 SHEET 3 A13 HIS A 172 ALA A 183 -1 O TYR A 181 N LEU A 157 SHEET 4 A13 PHE A 91 PHE A 99 -1 N LYS A 92 O LYS A 182 SHEET 5 A13 VAL A 104 GLN A 114 -1 O SER A 111 N PHE A 91 SHEET 6 A13 GLU A 117 THR A 127 -1 O LYS A 123 N THR A 108 SHEET 7 A13 MET A 12 VAL A 22 1 N HIS A 17 O VAL A 122 SHEET 8 A13 HIS A 25 ARG A 36 -1 O ILE A 29 N MET A 18 SHEET 9 A13 THR A 41 LYS A 50 -1 O LYS A 45 N GLU A 32 SHEET 10 A13 ILE A 210 HIS A 221 -1 O VAL A 211 N LEU A 46 SHEET 11 A13 TYR A 193 HIS A 204 -1 N ASP A 200 O TYR A 214 SHEET 12 A13 CYS A 146 GLU A 153 -1 N MET A 150 O TYR A 193 SHEET 13 A13 ALA A 156 LEU A 167 -1 O LYS A 158 N TYR A 151 LINK C APHE A 65 N1 ANRQ A 67 1555 1555 1.30 LINK C BPHE A 65 N1 BCH6 A 67 1555 1555 1.31 LINK C CPHE A 65 N1 CEYG A 67 1555 1555 1.28 LINK C3 ANRQ A 67 N SER A 69 1555 1555 1.34 LINK C3 BCH6 A 67 N SER A 69 1555 1555 1.34 LINK O GLU A 10 NA NA A 234 1555 1555 2.76 LINK OG1 THR A 41 NA NA A 235 1555 1555 3.07 LINK NA NA A 232 O HOH A 244 1555 1555 3.19 LINK NA NA A 232 O HOH A 600 1555 1555 2.64 LINK NA NA A 234 O HOH A 489 1555 1555 2.75 LINK NA NA A 235 O HOH A 631 1555 1555 3.03 CISPEP 1 GLY A 52 PRO A 53 0 -10.51 CISPEP 2 PHE A 87 PRO A 88 0 12.41 CISPEP 3 PHE A 87 PRO A 88 0 18.75 SITE 1 AC1 3 THR A 127 ASN A 128 HOH A 600 SITE 1 AC2 6 GLY A 191 ALA A 192 HOH A 533 HOH A 599 SITE 2 AC2 6 HOH A 602 HOH A 613 SITE 1 AC3 6 GLU A 10 ARG A 36 PRO A 37 TYR A 38 SITE 2 AC3 6 GLU A 39 HOH A 489 SITE 1 AC4 5 GLY A 35 ARG A 36 THR A 41 GLN A 42 SITE 2 AC4 5 HOH A 631 CRYST1 48.807 42.760 61.203 90.00 112.35 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020489 0.000000 0.008424 0.00000 SCALE2 0.000000 0.023386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017666 0.00000