HEADER TRANSFERASE 08-JUN-10 3NEI TITLE CRYSTAL STRUCTURE OF PRECORRIN-4 C11-METHYLTRANSFERASE FROM TITLE 2 RHODOBACTER CAPSULATUS (NO SAH BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRECORRIN-4 C(11)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PRECORRIN-3 METHYLASE; COMPND 5 EC: 2.1.1.133; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_COMMON: RHODOPSEUDOMONAS CAPSULATA; SOURCE 4 ORGANISM_TAXID: 272942; SOURCE 5 STRAIN: SB1003; SOURCE 6 GENE: COBM; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SEYEDARABI,R.W.PICKERSGILL REVDAT 2 01-NOV-23 3NEI 1 REMARK SEQADV REVDAT 1 15-JUN-11 3NEI 0 JRNL AUTH A.SEYEDARABI,R.W.PICKERSGILL JRNL TITL CRYSTAL STRUCTURE OF PRECORRIN-4 C11-METHYLTRANSFERASE FROM JRNL TITL 2 RHODOBACTER CAPSULATUS (NO SAH BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.280 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3381 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4628 ; 1.418 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 6.044 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;34.801 ;22.735 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;17.099 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.199 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2494 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2236 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3594 ; 1.264 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 1.978 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1034 ; 3.429 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17755 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 87.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDN ENTRY 3NDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 TRIS PH 8.5, 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.52300 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.92500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.52300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 SER A 139 REMARK 465 GLY A 140 REMARK 465 ARG A 141 REMARK 465 ALA A 142 REMARK 465 SER A 143 REMARK 465 GLU A 231 REMARK 465 ASP A 232 REMARK 465 PHE A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 SER A 236 REMARK 465 ARG A 237 REMARK 465 LEU A 238 REMARK 465 TYR A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 ASP A 242 REMARK 465 TYR A 243 REMARK 465 ASP A 244 REMARK 465 ARG A 245 REMARK 465 ARG A 246 REMARK 465 TYR A 247 REMARK 465 ARG A 248 REMARK 465 PRO A 249 REMARK 465 LEU A 250 REMARK 465 GLY A 251 REMARK 465 THR A 252 REMARK 465 HIS A 253 REMARK 465 PRO A 254 REMARK 465 ARG A 255 REMARK 465 PHE A 256 REMARK 465 PRO A 257 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 465 SER A 260 REMARK 465 GLU A 261 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 SER B 139 REMARK 465 GLY B 140 REMARK 465 ARG B 141 REMARK 465 ALA B 142 REMARK 465 SER B 143 REMARK 465 ALA B 144 REMARK 465 GLU B 231 REMARK 465 ASP B 232 REMARK 465 PHE B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 SER B 236 REMARK 465 ARG B 237 REMARK 465 LEU B 238 REMARK 465 TYR B 239 REMARK 465 ALA B 240 REMARK 465 GLY B 241 REMARK 465 ASP B 242 REMARK 465 TYR B 243 REMARK 465 ASP B 244 REMARK 465 ARG B 245 REMARK 465 ARG B 246 REMARK 465 TYR B 247 REMARK 465 ARG B 248 REMARK 465 PRO B 249 REMARK 465 LEU B 250 REMARK 465 GLY B 251 REMARK 465 THR B 252 REMARK 465 HIS B 253 REMARK 465 PRO B 254 REMARK 465 ARG B 255 REMARK 465 PHE B 256 REMARK 465 PRO B 257 REMARK 465 GLU B 258 REMARK 465 GLY B 259 REMARK 465 SER B 260 REMARK 465 GLU B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 147 -72.90 -28.19 REMARK 500 SER A 194 -20.43 82.10 REMARK 500 ALA A 214 -34.54 74.18 REMARK 500 VAL B 129 -57.00 -129.82 REMARK 500 SER B 194 -14.72 77.57 REMARK 500 ALA B 203 -147.93 -159.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NDC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PRECORRIN-4 C11-METHYLTRANSFERASE FROM REMARK 900 RHODOBACTER CAPSULATUS DBREF 3NEI A 1 261 UNP O68100 COBM_RHOCA 1 261 DBREF 3NEI B 1 261 UNP O68100 COBM_RHOCA 1 261 SEQADV 3NEI MET A -19 UNP O68100 EXPRESSION TAG SEQADV 3NEI GLY A -18 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER A -17 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER A -16 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A -15 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A -14 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A -13 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A -12 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A -11 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A -10 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER A -9 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER A -8 UNP O68100 EXPRESSION TAG SEQADV 3NEI GLY A -7 UNP O68100 EXPRESSION TAG SEQADV 3NEI LEU A -6 UNP O68100 EXPRESSION TAG SEQADV 3NEI VAL A -5 UNP O68100 EXPRESSION TAG SEQADV 3NEI PRO A -4 UNP O68100 EXPRESSION TAG SEQADV 3NEI ARG A -3 UNP O68100 EXPRESSION TAG SEQADV 3NEI GLY A -2 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER A -1 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS A 0 UNP O68100 EXPRESSION TAG SEQADV 3NEI MET B -19 UNP O68100 EXPRESSION TAG SEQADV 3NEI GLY B -18 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER B -17 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER B -16 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B -15 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B -14 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B -13 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B -12 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B -11 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B -10 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER B -9 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER B -8 UNP O68100 EXPRESSION TAG SEQADV 3NEI GLY B -7 UNP O68100 EXPRESSION TAG SEQADV 3NEI LEU B -6 UNP O68100 EXPRESSION TAG SEQADV 3NEI VAL B -5 UNP O68100 EXPRESSION TAG SEQADV 3NEI PRO B -4 UNP O68100 EXPRESSION TAG SEQADV 3NEI ARG B -3 UNP O68100 EXPRESSION TAG SEQADV 3NEI GLY B -2 UNP O68100 EXPRESSION TAG SEQADV 3NEI SER B -1 UNP O68100 EXPRESSION TAG SEQADV 3NEI HIS B 0 UNP O68100 EXPRESSION TAG SEQRES 1 A 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 281 LEU VAL PRO ARG GLY SER HIS MET THR VAL HIS PHE ILE SEQRES 3 A 281 GLY ALA GLY PRO GLY ALA ALA ASP LEU ILE THR ILE ARG SEQRES 4 A 281 GLY ARG ASP LEU ILE ALA SER CYS PRO VAL CYS LEU TYR SEQRES 5 A 281 ALA GLY SER LEU VAL PRO GLU ALA LEU LEU ALA HIS CYS SEQRES 6 A 281 PRO PRO GLY ALA LYS ILE VAL ASN THR ALA PRO MET SER SEQRES 7 A 281 LEU ASP ALA ILE ILE ASP THR ILE ALA GLU ALA HIS ALA SEQRES 8 A 281 ALA GLY GLN ASP VAL ALA ARG LEU HIS SER GLY ASP LEU SEQRES 9 A 281 SER ILE TRP SER ALA MET GLY GLU GLN LEU ARG ARG LEU SEQRES 10 A 281 ARG ALA LEU ASN ILE PRO TYR ASP VAL THR PRO GLY VAL SEQRES 11 A 281 PRO SER PHE ALA ALA ALA ALA ALA THR LEU GLY ALA GLU SEQRES 12 A 281 LEU THR LEU PRO GLY VAL ALA GLN SER VAL ILE LEU THR SEQRES 13 A 281 ARG THR SER GLY ARG ALA SER ALA MET PRO ALA GLY GLU SEQRES 14 A 281 THR LEU GLU ASN PHE ALA ARG THR GLY ALA VAL LEU ALA SEQRES 15 A 281 ILE HIS LEU SER VAL HIS VAL LEU ASP GLU VAL VAL GLN SEQRES 16 A 281 LYS LEU VAL PRO HIS TYR GLY GLU ASP CYS PRO VAL ALA SEQRES 17 A 281 ILE VAL TRP ARG ALA SER TRP PRO ASP GLN ARG VAL VAL SEQRES 18 A 281 ARG ALA THR LEU ALA THR LEU GLN THR SER LEU GLY ALA SEQRES 19 A 281 GLU LEU GLU ARG THR ALA LEU ILE LEU VAL GLY ARG SER SEQRES 20 A 281 LEU ALA THR GLU ASP PHE ASP GLU SER ARG LEU TYR ALA SEQRES 21 A 281 GLY ASP TYR ASP ARG ARG TYR ARG PRO LEU GLY THR HIS SEQRES 22 A 281 PRO ARG PHE PRO GLU GLY SER GLU SEQRES 1 B 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 281 LEU VAL PRO ARG GLY SER HIS MET THR VAL HIS PHE ILE SEQRES 3 B 281 GLY ALA GLY PRO GLY ALA ALA ASP LEU ILE THR ILE ARG SEQRES 4 B 281 GLY ARG ASP LEU ILE ALA SER CYS PRO VAL CYS LEU TYR SEQRES 5 B 281 ALA GLY SER LEU VAL PRO GLU ALA LEU LEU ALA HIS CYS SEQRES 6 B 281 PRO PRO GLY ALA LYS ILE VAL ASN THR ALA PRO MET SER SEQRES 7 B 281 LEU ASP ALA ILE ILE ASP THR ILE ALA GLU ALA HIS ALA SEQRES 8 B 281 ALA GLY GLN ASP VAL ALA ARG LEU HIS SER GLY ASP LEU SEQRES 9 B 281 SER ILE TRP SER ALA MET GLY GLU GLN LEU ARG ARG LEU SEQRES 10 B 281 ARG ALA LEU ASN ILE PRO TYR ASP VAL THR PRO GLY VAL SEQRES 11 B 281 PRO SER PHE ALA ALA ALA ALA ALA THR LEU GLY ALA GLU SEQRES 12 B 281 LEU THR LEU PRO GLY VAL ALA GLN SER VAL ILE LEU THR SEQRES 13 B 281 ARG THR SER GLY ARG ALA SER ALA MET PRO ALA GLY GLU SEQRES 14 B 281 THR LEU GLU ASN PHE ALA ARG THR GLY ALA VAL LEU ALA SEQRES 15 B 281 ILE HIS LEU SER VAL HIS VAL LEU ASP GLU VAL VAL GLN SEQRES 16 B 281 LYS LEU VAL PRO HIS TYR GLY GLU ASP CYS PRO VAL ALA SEQRES 17 B 281 ILE VAL TRP ARG ALA SER TRP PRO ASP GLN ARG VAL VAL SEQRES 18 B 281 ARG ALA THR LEU ALA THR LEU GLN THR SER LEU GLY ALA SEQRES 19 B 281 GLU LEU GLU ARG THR ALA LEU ILE LEU VAL GLY ARG SER SEQRES 20 B 281 LEU ALA THR GLU ASP PHE ASP GLU SER ARG LEU TYR ALA SEQRES 21 B 281 GLY ASP TYR ASP ARG ARG TYR ARG PRO LEU GLY THR HIS SEQRES 22 B 281 PRO ARG PHE PRO GLU GLY SER GLU HET SO4 A 300 5 HET SO4 B 300 5 HET GOL B 500 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *138(H2 O) HELIX 1 1 ALA A 12 ILE A 16 5 5 HELIX 2 2 THR A 17 CYS A 27 1 11 HELIX 3 3 GLY A 34 VAL A 37 5 4 HELIX 4 4 PRO A 38 CYS A 45 5 8 HELIX 5 5 SER A 58 ALA A 72 1 15 HELIX 6 6 MET A 90 ALA A 99 1 10 HELIX 7 7 PRO A 111 GLY A 121 1 11 HELIX 8 8 THR A 150 ARG A 156 1 7 HELIX 9 9 VAL A 169 GLY A 182 1 14 HELIX 10 10 ARG A 226 ALA A 229 5 4 HELIX 11 11 ALA B 12 ILE B 16 5 5 HELIX 12 12 THR B 17 CYS B 27 1 11 HELIX 13 13 PRO B 38 ALA B 43 1 6 HELIX 14 14 SER B 58 GLY B 73 1 16 HELIX 15 15 ALA B 89 LEU B 100 1 12 HELIX 16 16 PRO B 111 GLY B 121 1 11 HELIX 17 17 THR B 150 ARG B 156 1 7 HELIX 18 18 VAL B 169 GLY B 182 1 14 HELIX 19 19 THR B 207 LEU B 212 1 6 SHEET 1 A 5 LYS A 50 ASN A 53 0 SHEET 2 A 5 VAL A 29 TYR A 32 1 N CYS A 30 O VAL A 52 SHEET 3 A 5 VAL A 76 HIS A 80 1 O ALA A 77 N VAL A 29 SHEET 4 A 5 VAL A 3 GLY A 7 1 N HIS A 4 O VAL A 76 SHEET 5 A 5 TYR A 104 THR A 107 1 O ASP A 105 N PHE A 5 SHEET 1 B10 ARG A 199 THR A 204 0 SHEET 2 B10 PRO A 186 TRP A 191 -1 N VAL A 187 O ALA A 203 SHEET 3 B10 THR A 219 VAL A 224 -1 O LEU A 223 N ALA A 188 SHEET 4 B10 VAL A 160 SER A 166 -1 N ILE A 163 O ILE A 222 SHEET 5 B10 VAL A 133 ARG A 137 1 N ILE A 134 O ALA A 162 SHEET 6 B10 VAL B 133 ARG B 137 -1 O LEU B 135 N VAL A 133 SHEET 7 B10 VAL B 160 SER B 166 1 O ALA B 162 N ILE B 134 SHEET 8 B10 THR B 219 VAL B 224 -1 O ILE B 222 N ILE B 163 SHEET 9 B10 PRO B 186 TRP B 191 -1 N ALA B 188 O LEU B 223 SHEET 10 B10 ARG B 199 THR B 204 -1 O ALA B 203 N VAL B 187 SHEET 1 C 5 LYS B 50 ASN B 53 0 SHEET 2 C 5 VAL B 29 TYR B 32 1 N CYS B 30 O LYS B 50 SHEET 3 C 5 VAL B 76 HIS B 80 1 O ALA B 77 N VAL B 29 SHEET 4 C 5 VAL B 3 GLY B 7 1 N HIS B 4 O VAL B 76 SHEET 5 C 5 TYR B 104 THR B 107 1 O THR B 107 N PHE B 5 SITE 1 AC1 9 GLY A 82 ASP A 83 ILE A 86 TRP A 87 SITE 2 AC1 9 PRO A 111 SER A 112 HOH A 296 HOH A 298 SITE 3 AC1 9 HOH A 306 SITE 1 AC2 7 GLY B 82 ASP B 83 ILE B 86 TRP B 87 SITE 2 AC2 7 PRO B 111 SER B 112 HOH B 294 SITE 1 AC3 8 VAL B 129 ALA B 130 GLY B 158 ALA B 159 SITE 2 AC3 8 VAL B 160 GLY B 225 ARG B 226 SER B 227 CRYST1 51.046 54.499 175.850 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005687 0.00000