HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JUN-10 3NEK TITLE CRYSTAL STRUCTURE OF A NITROGEN REPRESSOR-LIKE PROTEIN MJ0159 FROM TITLE 2 METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REPRESSOR-LIKE PROTEIN MJ0159; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 GENE: MJ0159; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,Y.PATSKOVSKY,V.MALASHKEVICH,S.OZYURT,M.DICKEY,B.WU, AUTHOR 2 M.MALETIC,L.RODGERS,J.KOSS,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK AUTHOR 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3NEK 1 AUTHOR JRNL REMARK LINK REVDAT 4 21-NOV-18 3NEK 1 AUTHOR REVDAT 3 08-NOV-17 3NEK 1 REMARK REVDAT 2 05-JAN-11 3NEK 1 JRNL REVDAT 1 23-JUN-10 3NEK 0 SPRSDE 23-JUN-10 3NEK 2QYX JRNL AUTH G.WISEDCHAISRI,D.M.DRANOW,T.J.LIE,J.B.BONANNO,Y.PATSKOVSKY, JRNL AUTH 2 S.A.OZYURT,J.M.SAUDER,S.C.ALMO,S.R.WASSERMAN,S.K.BURLEY, JRNL AUTH 3 J.A.LEIGH,T.GONEN JRNL TITL STRUCTURAL UNDERPINNINGS OF NITROGEN REGULATION BY THE JRNL TITL 2 PROTOTYPICAL NITROGEN-RESPONSIVE TRANSCRIPTIONAL FACTOR JRNL TITL 3 NRPR. JRNL REF STRUCTURE V. 18 1512 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21070950 JRNL DOI 10.1016/J.STR.2010.08.014 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 15303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3580 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4814 ; 1.116 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 5.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;39.919 ;25.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;19.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2634 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2181 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3529 ; 0.955 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1399 ; 1.343 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 2.247 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 321 A 539 6 REMARK 3 1 B 321 B 539 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1741 ; 0.500 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1741 ; 1.950 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 540 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7090 -19.5580 -13.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0263 REMARK 3 T33: 0.2191 T12: 0.0339 REMARK 3 T13: -0.0532 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.6418 L22: 1.6964 REMARK 3 L33: 3.3975 L12: -0.4923 REMARK 3 L13: -1.1941 L23: -0.1881 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: -0.1428 S13: 0.0344 REMARK 3 S21: 0.0136 S22: 0.0937 S23: 0.1400 REMARK 3 S31: 0.1534 S32: 0.1517 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 319 B 539 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1780 -28.4600 -44.8110 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: 0.0479 REMARK 3 T33: 0.2294 T12: -0.0236 REMARK 3 T13: 0.0180 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.2163 L22: 2.7040 REMARK 3 L33: 2.0329 L12: 0.1227 REMARK 3 L13: -0.0054 L23: 0.5681 REMARK 3 S TENSOR REMARK 3 S11: -0.0976 S12: 0.2161 S13: -0.1822 REMARK 3 S21: -0.1367 S22: -0.0018 S23: -0.1553 REMARK 3 S31: -0.0149 S32: 0.0364 S33: 0.0993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM MES PH 7.0, 40% MPD, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.80700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.61400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.61400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.80700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 LYS A 307 REMARK 465 LYS A 308 REMARK 465 ASN A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 ASP A 312 REMARK 465 ILE A 313 REMARK 465 VAL A 314 REMARK 465 THR A 315 REMARK 465 LYS A 316 REMARK 465 LYS A 317 REMARK 465 ALA A 318 REMARK 465 ASN A 319 REMARK 465 ILE A 320 REMARK 465 GLU A 541 REMARK 465 ILE A 542 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 LYS B 307 REMARK 465 LYS B 308 REMARK 465 ASN B 309 REMARK 465 PRO B 310 REMARK 465 ARG B 311 REMARK 465 ASP B 312 REMARK 465 ILE B 313 REMARK 465 VAL B 314 REMARK 465 THR B 315 REMARK 465 LYS B 316 REMARK 465 LYS B 317 REMARK 465 ALA B 318 REMARK 465 LYS B 540 REMARK 465 GLU B 541 REMARK 465 ILE B 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 377 171.63 67.62 REMARK 500 ASP A 387 -25.46 -145.49 REMARK 500 GLU A 451 -46.21 -137.49 REMARK 500 SER B 377 -172.17 74.72 REMARK 500 THR B 421 -159.74 -115.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10196A RELATED DB: TARGETDB DBREF 3NEK A 306 542 UNP Q57623 Y159_METJA 306 542 DBREF 3NEK B 306 542 UNP Q57623 Y159_METJA 306 542 SEQADV 3NEK SER A 305 UNP Q57623 EXPRESSION TAG SEQADV 3NEK SER B 305 UNP Q57623 EXPRESSION TAG SEQRES 1 A 238 SER LEU LYS LYS ASN PRO ARG ASP ILE VAL THR LYS LYS SEQRES 2 A 238 ALA ASN ILE ARG ILE LYS THR ALA LEU SER LYS MSE PHE SEQRES 3 A 238 ASN ALA MSE ALA LYS VAL THR TYR ASP ILE ASP GLU ALA SEQRES 4 A 238 ASP GLY ASP VAL ILE VAL ASN THR ALA PHE ILE ASP LYS SEQRES 5 A 238 LYS TYR LEU ASP GLU ALA PHE ASP ILE LEU LYS GLU ALA SEQRES 6 A 238 TYR LYS LYS GLY LEU GLY ILE SER ASP ARG PHE GLY ILE SEQRES 7 A 238 VAL GLU GLU ASN ASP ARG ILE LYS ILE GLN THR ILE CYS SEQRES 8 A 238 ALA VAL THR LEU ASP GLY ILE PHE LEU ARG ASN SER VAL SEQRES 9 A 238 PRO LEU ILE PRO LYS TYR GLY GLY ILE LEU GLU ILE THR SEQRES 10 A 238 GLU ASP LYS GLU ARG PHE ILE ASP ILE ILE GLY TYR ASP SEQRES 11 A 238 GLY SER SER LEU ASP PRO HIS GLU VAL PHE PHE ASN PHE SEQRES 12 A 238 VAL ASP CYS GLU LYS THR PHE LEU ALA GLY PHE ARG GLU SEQRES 13 A 238 VAL HIS ARG VAL ALA ARG GLU LYS LEU GLU GLU VAL LEU SEQRES 14 A 238 LYS LYS LEU ASN TRP ASN GLY ILE LYS ALA ILE GLY GLU SEQRES 15 A 238 PRO ASN ASN GLU LEU TYR GLY ILE GLY VAL ASN LYS ASP SEQRES 16 A 238 MSE CYS GLY VAL VAL THR MSE GLY GLY ILE ASN PRO LEU SEQRES 17 A 238 VAL LEU LEU LYS GLU ASN GLU ILE PRO ILE GLU LEU LYS SEQRES 18 A 238 ALA MSE HIS GLU VAL VAL ARG PHE SER ASP LEU LYS SER SEQRES 19 A 238 TYR LYS GLU ILE SEQRES 1 B 238 SER LEU LYS LYS ASN PRO ARG ASP ILE VAL THR LYS LYS SEQRES 2 B 238 ALA ASN ILE ARG ILE LYS THR ALA LEU SER LYS MSE PHE SEQRES 3 B 238 ASN ALA MSE ALA LYS VAL THR TYR ASP ILE ASP GLU ALA SEQRES 4 B 238 ASP GLY ASP VAL ILE VAL ASN THR ALA PHE ILE ASP LYS SEQRES 5 B 238 LYS TYR LEU ASP GLU ALA PHE ASP ILE LEU LYS GLU ALA SEQRES 6 B 238 TYR LYS LYS GLY LEU GLY ILE SER ASP ARG PHE GLY ILE SEQRES 7 B 238 VAL GLU GLU ASN ASP ARG ILE LYS ILE GLN THR ILE CYS SEQRES 8 B 238 ALA VAL THR LEU ASP GLY ILE PHE LEU ARG ASN SER VAL SEQRES 9 B 238 PRO LEU ILE PRO LYS TYR GLY GLY ILE LEU GLU ILE THR SEQRES 10 B 238 GLU ASP LYS GLU ARG PHE ILE ASP ILE ILE GLY TYR ASP SEQRES 11 B 238 GLY SER SER LEU ASP PRO HIS GLU VAL PHE PHE ASN PHE SEQRES 12 B 238 VAL ASP CYS GLU LYS THR PHE LEU ALA GLY PHE ARG GLU SEQRES 13 B 238 VAL HIS ARG VAL ALA ARG GLU LYS LEU GLU GLU VAL LEU SEQRES 14 B 238 LYS LYS LEU ASN TRP ASN GLY ILE LYS ALA ILE GLY GLU SEQRES 15 B 238 PRO ASN ASN GLU LEU TYR GLY ILE GLY VAL ASN LYS ASP SEQRES 16 B 238 MSE CYS GLY VAL VAL THR MSE GLY GLY ILE ASN PRO LEU SEQRES 17 B 238 VAL LEU LEU LYS GLU ASN GLU ILE PRO ILE GLU LEU LYS SEQRES 18 B 238 ALA MSE HIS GLU VAL VAL ARG PHE SER ASP LEU LYS SER SEQRES 19 B 238 TYR LYS GLU ILE MODRES 3NEK MSE A 329 MET SELENOMETHIONINE MODRES 3NEK MSE A 333 MET SELENOMETHIONINE MODRES 3NEK MSE A 500 MET SELENOMETHIONINE MODRES 3NEK MSE A 506 MET SELENOMETHIONINE MODRES 3NEK MSE A 527 MET SELENOMETHIONINE MODRES 3NEK MSE B 329 MET SELENOMETHIONINE MODRES 3NEK MSE B 333 MET SELENOMETHIONINE MODRES 3NEK MSE B 500 MET SELENOMETHIONINE MODRES 3NEK MSE B 506 MET SELENOMETHIONINE MODRES 3NEK MSE B 527 MET SELENOMETHIONINE HET MSE A 329 8 HET MSE A 333 8 HET MSE A 500 8 HET MSE A 506 8 HET MSE A 527 8 HET MSE B 329 8 HET MSE B 333 8 HET MSE B 500 8 HET MSE B 506 8 HET MSE B 527 8 HET GOL A 1 6 HET GOL A 3 6 HET GOL B 2 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *14(H2 O) HELIX 1 1 THR A 324 ALA A 334 1 11 HELIX 2 2 TYR A 358 LYS A 372 1 15 HELIX 3 3 ALA A 396 ASN A 406 1 11 HELIX 4 4 ASP A 439 PHE A 444 1 6 HELIX 5 5 PHE A 445 VAL A 448 5 4 HELIX 6 6 ALA A 465 ASN A 477 1 13 HELIX 7 7 ILE A 509 ASN A 518 1 10 HELIX 8 8 SER A 534 LEU A 536 5 3 HELIX 9 9 THR B 324 VAL B 336 1 13 HELIX 10 10 TYR B 358 LYS B 372 1 15 HELIX 11 11 CYS B 395 ARG B 405 1 11 HELIX 12 12 ASP B 439 PHE B 445 1 7 HELIX 13 13 ASN B 446 VAL B 448 5 3 HELIX 14 14 ALA B 465 ASN B 477 1 13 HELIX 15 15 ILE B 509 ASN B 518 1 10 HELIX 16 16 SER B 534 LEU B 536 5 3 SHEET 1 A 5 GLU A 523 ARG A 532 0 SHEET 2 A 5 ASP A 346 ASP A 355 -1 N VAL A 347 O VAL A 531 SHEET 3 A 5 ARG A 388 ILE A 394 -1 O THR A 393 N ASN A 350 SHEET 4 A 5 ARG A 379 GLU A 384 -1 N GLY A 381 O GLN A 392 SHEET 5 A 5 LYS A 537 SER A 538 -1 O LYS A 537 N PHE A 380 SHEET 1 B 5 GLU A 425 GLY A 432 0 SHEET 2 B 5 LEU A 410 ILE A 420 -1 N GLU A 419 O ARG A 426 SHEET 3 B 5 THR A 453 HIS A 462 -1 O PHE A 454 N LEU A 418 SHEET 4 B 5 MSE A 500 MSE A 506 -1 O VAL A 503 N ARG A 459 SHEET 5 B 5 ILE A 481 ILE A 484 -1 N LYS A 482 O VAL A 504 SHEET 1 C 5 GLU B 523 ARG B 532 0 SHEET 2 C 5 ASP B 346 ASP B 355 -1 N PHE B 353 O GLU B 523 SHEET 3 C 5 ARG B 388 ILE B 394 -1 O THR B 393 N ASN B 350 SHEET 4 C 5 ARG B 379 GLU B 384 -1 N GLY B 381 O GLN B 392 SHEET 5 C 5 LYS B 537 SER B 538 -1 O LYS B 537 N PHE B 380 SHEET 1 D 5 GLU B 425 GLY B 432 0 SHEET 2 D 5 LEU B 410 ILE B 420 -1 N GLU B 419 O ARG B 426 SHEET 3 D 5 THR B 453 HIS B 462 -1 O PHE B 454 N LEU B 418 SHEET 4 D 5 MSE B 500 MSE B 506 -1 O CYS B 501 N VAL B 461 SHEET 5 D 5 ILE B 481 ILE B 484 -1 N LYS B 482 O VAL B 504 LINK C LYS A 328 N MSE A 329 1555 1555 1.33 LINK C MSE A 329 N PHE A 330 1555 1555 1.33 LINK C ALA A 332 N MSE A 333 1555 1555 1.33 LINK C MSE A 333 N ALA A 334 1555 1555 1.33 LINK C ASP A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N CYS A 501 1555 1555 1.33 LINK C THR A 505 N MSE A 506 1555 1555 1.33 LINK C MSE A 506 N GLY A 507 1555 1555 1.33 LINK C ALA A 526 N MSE A 527 1555 1555 1.34 LINK C MSE A 527 N HIS A 528 1555 1555 1.33 LINK C LYS B 328 N MSE B 329 1555 1555 1.33 LINK C MSE B 329 N PHE B 330 1555 1555 1.34 LINK C ALA B 332 N MSE B 333 1555 1555 1.34 LINK C MSE B 333 N ALA B 334 1555 1555 1.34 LINK C ASP B 499 N MSE B 500 1555 1555 1.33 LINK C MSE B 500 N CYS B 501 1555 1555 1.33 LINK C THR B 505 N MSE B 506 1555 1555 1.32 LINK C MSE B 506 N GLY B 507 1555 1555 1.32 LINK C ALA B 526 N MSE B 527 1555 1555 1.34 LINK C MSE B 527 N HIS B 528 1555 1555 1.33 SITE 1 AC1 6 ASN A 350 ALA A 396 TYR A 433 HIS A 441 SITE 2 AC1 6 ARG A 459 GLY A 508 SITE 1 AC2 3 LYS A 482 MSE A 506 TYR A 539 SITE 1 AC3 6 ASN B 350 ALA B 396 TYR B 433 HIS B 441 SITE 2 AC3 6 GLY B 508 ILE B 509 CRYST1 80.009 80.009 116.421 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012499 0.007216 0.000000 0.00000 SCALE2 0.000000 0.014432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008590 0.00000