HEADER PROTEIN TRANSPORT 09-JUN-10 3NF5 TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF NUCLEAR PORE COMPLEX TITLE 2 COMPONENT NUP116 FROM CANDIDA GLABRATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP116; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN RESIDUES 881-1034; COMPND 5 SYNONYM: STRAIN CBS138 CHROMOSOME F COMPLETE SEQUENCE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5478; SOURCE 5 STRAIN: CBS 138; SOURCE 6 GENE: CAGL0F06171G, NUP116 (GI50287617); SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC); MODIFIED PET26B KEYWDS NUCLEAR PORE COMPLEX, NUP116, GLEBS DOMAIN, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX KEYWDS 3 RESEARCH CONSORTIUM, NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,D.MANGLICMOT,K.BAIN,J.GILMORE,T.GHEYI,M.ROUT,A.SALI, AUTHOR 2 S.ATWELL,D.A.THOMPSON,J.S.EMTAGE,S.WASSERMAN,J.M.SAUDER,S.K.BURLEY, AUTHOR 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 16-OCT-24 3NF5 1 REMARK REVDAT 8 22-NOV-23 3NF5 1 REMARK REVDAT 7 06-SEP-23 3NF5 1 REMARK REVDAT 6 10-FEB-21 3NF5 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 LINK REVDAT 5 21-NOV-18 3NF5 1 AUTHOR REVDAT 4 10-OCT-12 3NF5 1 JRNL REVDAT 3 20-JUN-12 3NF5 1 JRNL REVDAT 2 21-DEC-11 3NF5 1 COMPND JRNL SOURCE TITLE REVDAT 2 2 1 VERSN REVDAT 1 04-AUG-10 3NF5 0 JRNL AUTH P.SAMPATHKUMAR,S.J.KIM,D.MANGLICMOT,K.T.BAIN,J.GILMORE, JRNL AUTH 2 T.GHEYI,J.PHILLIPS,U.PIEPER,J.FERNANDEZ-MARTINEZ,J.D.FRANKE, JRNL AUTH 3 T.MATSUI,H.TSURUTA,S.ATWELL,D.A.THOMPSON,J.S.EMTAGE, JRNL AUTH 4 S.R.WASSERMAN,M.P.ROUT,A.SALI,J.M.SAUDER,S.C.ALMO,S.K.BURLEY JRNL TITL ATOMIC STRUCTURE OF THE NUCLEAR PORE COMPLEX TARGETING JRNL TITL 2 DOMAIN OF A NUP116 HOMOLOGUE FROM THE YEAST, CANDIDA JRNL TITL 3 GLABRATA. JRNL REF PROTEINS V. 80 2110 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22544723 JRNL DOI 10.1002/PROT.24102 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2471 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1643 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3365 ; 1.781 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4041 ; 1.015 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;38.464 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 402 ;13.318 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2728 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 470 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1552 ; 1.117 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 611 ; 0.301 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2520 ; 1.998 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 919 ; 2.926 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 842 ; 4.504 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 34.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47100 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: POLY-ALANINE MODEL OF YEAST NUP145 PDB ID: 3KEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 25% PEGMME 2000, 200MM REMARK 280 SODIUM POTASSIUM TARTARAE, 0.4MICROL OF 5% ETHYLACETATE USED REMARK 280 ADDITIVE INTO 2MICROL DROP, PH 6.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.83400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 879 REMARK 465 GLY A 1036 REMARK 465 HIS A 1037 REMARK 465 HIS A 1038 REMARK 465 HIS A 1039 REMARK 465 HIS A 1040 REMARK 465 HIS A 1041 REMARK 465 HIS A 1042 REMARK 465 MSE B 879 REMARK 465 ASN B 960 REMARK 465 SER B 961 REMARK 465 THR B 962 REMARK 465 ASN B 963 REMARK 465 GLY B 1036 REMARK 465 HIS B 1037 REMARK 465 HIS B 1038 REMARK 465 HIS B 1039 REMARK 465 HIS B 1040 REMARK 465 HIS B 1041 REMARK 465 HIS B 1042 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 892 CG CD OE1 OE2 REMARK 470 GLU A 915 CG CD OE1 OE2 REMARK 470 ASP A 937 CG OD1 OD2 REMARK 470 GLU A 966 CG CD OE1 OE2 REMARK 470 ASP A 986 CG OD1 OD2 REMARK 470 LYS A 991 CG CD CE NZ REMARK 470 GLU A1002 CG CD OE1 OE2 REMARK 470 GLU A1035 CG CD OE1 OE2 REMARK 470 LYS B 908 CG CD CE NZ REMARK 470 TYR B 909 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 923 CG CD OE1 NE2 REMARK 470 ASP B 937 CG OD1 OD2 REMARK 470 GLU B 966 CG CD OE1 OE2 REMARK 470 LYS B 967 CG CD CE NZ REMARK 470 LYS B 969 CG CD CE NZ REMARK 470 LYS B 991 CG CD CE NZ REMARK 470 ASP B 995 CG OD1 OD2 REMARK 470 LYS B1010 CG CD CE NZ REMARK 470 GLU B1035 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 880 O HOH B 150 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 933 CB VAL A 933 CG1 -0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 893 -51.80 82.46 REMARK 500 LYS A 913 52.99 -148.94 REMARK 500 ASP A 937 -16.24 75.45 REMARK 500 ASP A 946 -70.16 -145.99 REMARK 500 LYS B 913 51.29 -145.96 REMARK 500 ASP B 937 31.62 -92.75 REMARK 500 ASP B 946 -78.26 -148.28 REMARK 500 HIS B1013 30.20 70.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-15100C RELATED DB: TARGETTRACK DBREF 3NF5 A 881 1034 UNP Q6FU56 Q6FU56_CANGA 881 1034 DBREF 3NF5 B 881 1034 UNP Q6FU56 Q6FU56_CANGA 881 1034 SEQADV 3NF5 MSE A 879 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 SER A 880 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 GLU A 1035 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 GLY A 1036 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS A 1037 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS A 1038 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS A 1039 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS A 1040 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS A 1041 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS A 1042 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 MSE B 879 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 SER B 880 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 GLU B 1035 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 GLY B 1036 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS B 1037 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS B 1038 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS B 1039 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS B 1040 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS B 1041 UNP Q6FU56 EXPRESSION TAG SEQADV 3NF5 HIS B 1042 UNP Q6FU56 EXPRESSION TAG SEQRES 1 A 164 MSE SER LEU ASP GLY ILE ASP ASP LEU GLU PHE VAL ASP SEQRES 2 A 164 GLU ASN TYR TYR ILE SER PRO SER LEU ASP THR LEU ALA SEQRES 3 A 164 THR LEU SER LYS TYR GLU ILE GLN LYS VAL GLU ASN LEU SEQRES 4 A 164 VAL VAL GLY ASN LYS GLN TYR GLY LYS ILE GLU PHE LEU SEQRES 5 A 164 ASP PRO VAL ASP LEU SER ASP ILE PRO LEU GLY SER ILE SEQRES 6 A 164 CYS ASP ASP LEU VAL VAL PHE GLN PRO MSE SER VAL LEU SEQRES 7 A 164 LEU TYR ASN ASN SER THR ASN VAL PRO GLU LYS GLY LYS SEQRES 8 A 164 GLY LEU ASN VAL ARG ALA ARG ILE SER CYS TYR ASN CYS SEQRES 9 A 164 TYR PRO LEU ASP LYS SER THR ARG LYS PRO ILE LYS ASP SEQRES 10 A 164 PRO ASN HIS ARG ILE MSE GLU ARG TYR SER GLU LYS LEU SEQRES 11 A 164 LYS LYS ILE PRO HIS THR HIS PHE GLU SER TYR ASP PRO SEQRES 12 A 164 ALA SER GLY THR TYR CYS PHE THR VAL ASP HIS ALA LEU SEQRES 13 A 164 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 164 MSE SER LEU ASP GLY ILE ASP ASP LEU GLU PHE VAL ASP SEQRES 2 B 164 GLU ASN TYR TYR ILE SER PRO SER LEU ASP THR LEU ALA SEQRES 3 B 164 THR LEU SER LYS TYR GLU ILE GLN LYS VAL GLU ASN LEU SEQRES 4 B 164 VAL VAL GLY ASN LYS GLN TYR GLY LYS ILE GLU PHE LEU SEQRES 5 B 164 ASP PRO VAL ASP LEU SER ASP ILE PRO LEU GLY SER ILE SEQRES 6 B 164 CYS ASP ASP LEU VAL VAL PHE GLN PRO MSE SER VAL LEU SEQRES 7 B 164 LEU TYR ASN ASN SER THR ASN VAL PRO GLU LYS GLY LYS SEQRES 8 B 164 GLY LEU ASN VAL ARG ALA ARG ILE SER CYS TYR ASN CYS SEQRES 9 B 164 TYR PRO LEU ASP LYS SER THR ARG LYS PRO ILE LYS ASP SEQRES 10 B 164 PRO ASN HIS ARG ILE MSE GLU ARG TYR SER GLU LYS LEU SEQRES 11 B 164 LYS LYS ILE PRO HIS THR HIS PHE GLU SER TYR ASP PRO SEQRES 12 B 164 ALA SER GLY THR TYR CYS PHE THR VAL ASP HIS ALA LEU SEQRES 13 B 164 GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3NF5 MSE A 953 MET SELENOMETHIONINE MODRES 3NF5 MSE A 1001 MET SELENOMETHIONINE MODRES 3NF5 MSE B 953 MET SELENOMETHIONINE MODRES 3NF5 MSE B 1001 MET SELENOMETHIONINE HET MSE A 953 8 HET MSE A1001 8 HET MSE B 953 8 HET MSE B1001 8 HET GOL A 1 6 HET GOL B 2 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *150(H2 O) HELIX 1 1 SER A 899 LEU A 906 1 8 HELIX 2 2 SER A 907 GLN A 912 1 6 HELIX 3 3 PRO A 939 ILE A 943 5 5 HELIX 4 4 ARG A 999 ILE A 1011 1 13 HELIX 5 5 SER B 899 ALA B 904 1 6 HELIX 6 6 TYR B 909 VAL B 914 5 6 HELIX 7 7 PRO B 939 ILE B 943 5 5 HELIX 8 8 ARG B 999 LYS B 1009 1 11 SHEET 1 A 6 TYR A 894 SER A 897 0 SHEET 2 A 6 VAL A 918 ASN A 921 -1 O VAL A 918 N SER A 897 SHEET 3 A 6 GLY A 925 PHE A 929 -1 O GLY A 925 N ASN A 921 SHEET 4 A 6 ALA A 975 CYS A 979 -1 O ARG A 976 N GLU A 928 SHEET 5 A 6 THR A1025 VAL A1030 -1 O PHE A1028 N ILE A 977 SHEET 6 A 6 HIS A1015 ASP A1020 -1 N SER A1018 O CYS A1027 SHEET 1 B 2 VAL A 948 GLN A 951 0 SHEET 2 B 2 SER A 954 LEU A 957 -1 O SER A 954 N GLN A 951 SHEET 1 C 6 TYR B 894 SER B 897 0 SHEET 2 C 6 VAL B 918 ASN B 921 -1 O VAL B 918 N SER B 897 SHEET 3 C 6 GLY B 925 PHE B 929 -1 O GLY B 925 N ASN B 921 SHEET 4 C 6 ALA B 975 CYS B 979 -1 O SER B 978 N LYS B 926 SHEET 5 C 6 TYR B1026 VAL B1030 -1 O TYR B1026 N CYS B 979 SHEET 6 C 6 HIS B1015 TYR B1019 -1 N SER B1018 O CYS B1027 SHEET 1 D 2 VAL B 948 GLN B 951 0 SHEET 2 D 2 SER B 954 LEU B 957 -1 O LEU B 956 N VAL B 949 LINK C PRO A 952 N MSE A 953 1555 1555 1.36 LINK C MSE A 953 N SER A 954 1555 1555 1.34 LINK C ILE A1000 N MSE A1001 1555 1555 1.32 LINK C MSE A1001 N GLU A1002 1555 1555 1.34 LINK C PRO B 952 N MSE B 953 1555 1555 1.35 LINK C MSE B 953 N SER B 954 1555 1555 1.33 LINK C ILE B1000 N MSE B1001 1555 1555 1.32 LINK C MSE B1001 N GLU B1002 1555 1555 1.33 CISPEP 1 SER A 897 PRO A 898 0 -9.11 CISPEP 2 SER B 897 PRO B 898 0 -8.13 SITE 1 AC1 5 PRO A 898 GLU A 910 LYS A 913 VAL A 914 SITE 2 AC1 5 GLU A 915 SITE 1 AC2 5 TYR A 980 THR A1025 HOH B 141 TYR B 980 SITE 2 AC2 5 THR B1025 CRYST1 48.703 67.668 55.119 90.00 101.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020533 0.000000 0.004129 0.00000 SCALE2 0.000000 0.014778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018506 0.00000