HEADER LIGASE 10-JUN-10 3NG0 TITLE CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SYNECHOCYSTIS SP. PCC TITLE 2 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMATE--AMMONIA LIGASE; COMPND 5 EC: 6.3.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: GLNA, SLR1756; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5-ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBS-SK+ KEYWDS GLUTAMINE SYNTHETASE TYPE I, GSI, NITROGEN METABOLISM, SYNECHOCYSTIS, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SAELICES,D.CASCIO,F.J.FLORENCIO,M.I.MURO-PASTOR REVDAT 2 21-FEB-24 3NG0 1 REMARK SEQADV LINK REVDAT 1 15-JUN-11 3NG0 0 JRNL AUTH L.SAELICES,D.CASCIO,F.J.FLORENCIO,M.I.MURO-PASTOR JRNL TITL CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SYNECHOCYSTIS JRNL TITL 2 SP. PCC 6803 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.287 REMARK 3 R VALUE (WORKING SET) : 0.285 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2817 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3048 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2693 REMARK 3 BIN R VALUE (WORKING SET) : 0.3031 REMARK 3 BIN FREE R VALUE : 0.3443 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.64650 REMARK 3 B22 (A**2) : 6.64650 REMARK 3 B33 (A**2) : -13.29300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.546 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.818 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.776 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3811 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5180 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1299 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 546 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3778 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 485 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4473 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.48 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.21300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE,0.1M CALCIUM REMARK 280 ACETATE, 10% PEG 4000, PH 4.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 99130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 173520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -761.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 7 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 202.13000 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 202.13000 REMARK 350 BIOMT1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 -1.000000 202.13000 REMARK 350 BIOMT1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 202.13000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 202.13000 REMARK 350 BIOMT1 12 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 202.13000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS CRYSTAL CONTAINS 2 MOLECULES PER ASYMMETRIC UNIT. P622 CRYSTAL REMARK 400 SYMMETRY GENERATES TWO DODECAMERS (BIOLOGICAL UNITS) IN THE UNIT REMARK 400 CELL, ONE DODECAMER FROM EACH MONOMER. UNIT CELL TRANSLATIONS ALONG REMARK 400 A AND B GENERATE LAYERS IN THE CRYSTAL COMPOSED OF DODECAMER 1 REMARK 400 WHICH ARE INTERLEAVED BY SIMILAR LAYERS COMPOSED OF DODECAMER 2. REMARK 400 TRANSLOCATION LATTICE DEFECTS (TLD) COMPLICATE THE INTERPRETATION REMARK 400 OF THE ELECTRON DENSITY FOR DODECAMER 2. THIS DODECAMER IS REMARK 400 DISTRIBUTED RANDOMLY OVER 6 DIFFERENT POSITIONS (DIFFERING IN X,Y REMARK 400 COORDINATES) WITHIN THE LAYER. TO FACILITATE INTERPRETATION OF THE REMARK 400 ELECTRON DENSITY MAP, THE CONTRIBUTION FROM DODECAMER 2 HAS BEEN REMARK 400 REMOVED FROM THE STRUCTURE FACTORS BY APPLYING A LATTICE REMARK 400 TRANSLOCATION CORRECTION. ACCORDINGLY, THE COORDINATES FOR THE REMARK 400 SECOND MOLECULE ARE NOT INCLUDED IN THIS PDB ENTRY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 401 REMARK 465 ASP A 402 REMARK 465 LEU A 403 REMARK 465 SER A 404 REMARK 465 PRO A 405 REMARK 465 GLU A 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 399 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 -67.55 -126.13 REMARK 500 TRP A 60 -130.96 -110.90 REMARK 500 PRO A 86 107.43 -47.37 REMARK 500 GLN A 145 113.73 -161.91 REMARK 500 THR A 146 -167.96 -106.98 REMARK 500 GLU A 210 -62.20 -125.24 REMARK 500 LEU A 231 -73.18 -27.47 REMARK 500 LYS A 289 -152.33 -88.27 REMARK 500 PRO A 317 33.39 -91.93 REMARK 500 ALA A 331 -175.94 92.45 REMARK 500 GLN A 389 71.95 -119.04 REMARK 500 ILE A 390 113.86 -32.42 REMARK 500 ASP A 397 62.82 -100.68 REMARK 500 ASP A 399 -98.91 -88.46 REMARK 500 GLU A 454 -58.71 -130.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 475 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE2 REMARK 620 2 GLU A 215 OE2 89.1 REMARK 620 3 GLU A 223 OE1 118.8 100.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 477 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 361 OE2 REMARK 620 2 ANP A 474 O1G 81.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 477 DBREF 3NG0 A 1 473 UNP P77961 GLNA_SYNY3 1 473 SEQADV 3NG0 ALA A 115 UNP P77961 VAL 115 VARIANT SEQADV 3NG0 ALA A 204 UNP P77961 GLY 204 VARIANT SEQADV 3NG0 PHE A 205 UNP P77961 LEU 205 VARIANT SEQADV 3NG0 GLY A 206 UNP P77961 CYS 206 VARIANT SEQRES 1 A 473 MET ALA ARG THR PRO GLN GLU VAL LEU LYS TRP ILE GLN SEQRES 2 A 473 ASP GLU ASN ILE LYS ILE ILE ASP LEU LYS PHE ILE ASP SEQRES 3 A 473 THR PRO GLY ILE TRP GLN HIS CYS SER PHE TYR TYR ASP SEQRES 4 A 473 GLN LEU ASP GLU ASN SER PHE THR GLU GLY ILE PRO PHE SEQRES 5 A 473 ASP GLY SER SER ILE ARG GLY TRP LYS ALA ILE ASN GLU SEQRES 6 A 473 SER ASP MET CYS MET VAL PRO ASP PRO ASN THR ALA THR SEQRES 7 A 473 ILE ASP PRO PHE CYS LYS GLU PRO THR LEU SER MET ILE SEQRES 8 A 473 CYS SER ILE LYS GLU PRO ARG THR GLY GLU TRP TYR ASN SEQRES 9 A 473 ARG ASP PRO ARG THR ILE ALA ALA LYS ALA ALA GLU TYR SEQRES 10 A 473 LEU ARG GLY THR GLY ILE ALA ASP THR VAL TYR PHE GLY SEQRES 11 A 473 PRO GLU ALA GLU PHE PHE LEU PHE ASP ASP ILE ARG PHE SEQRES 12 A 473 GLY GLN THR GLU ASN SER SER TYR TYR PHE ALA ASP SER SEQRES 13 A 473 VAL GLU GLY ARG TRP ASN THR GLY ARG GLU GLU GLU GLY SEQRES 14 A 473 GLY ASN LEU GLY TYR LYS PRO GLY TYR LYS GLN GLY TYR SEQRES 15 A 473 PHE PRO VAL ALA PRO THR ASP THR ALA GLN ASP ILE ARG SEQRES 16 A 473 THR GLU MET LEU LEU THR MET ALA ALA PHE GLY VAL PRO SEQRES 17 A 473 ILE GLU LYS HIS HIS HIS GLU VAL ALA SER GLY GLY GLN SEQRES 18 A 473 ASN GLU LEU GLY ILE LYS PHE ASP LYS LEU VAL ASN SER SEQRES 19 A 473 ALA ASP ASN LEU MET ILE TYR LYS TYR VAL ILE LYS ASN SEQRES 20 A 473 VAL ALA LYS LYS TYR GLY LYS THR VAL THR PHE MET PRO SEQRES 21 A 473 LYS PRO ILE PHE ASN ASP ASN GLY SER GLY MET HIS VAL SEQRES 22 A 473 HIS GLN SER LEU TRP LYS ASP GLY GLN PRO LEU PHE ALA SEQRES 23 A 473 GLY ASP LYS TYR ALA GLY PHE SER GLN MET GLY LEU TRP SEQRES 24 A 473 TYR ILE GLY GLY ILE LEU LYS HIS ALA PRO ALA LEU LEU SEQRES 25 A 473 ALA PHE THR ASN PRO THR THR ASN SER TYR LYS ARG LEU SEQRES 26 A 473 VAL PRO GLY PHE GLU ALA PRO VAL ASN LEU ALA TYR SER SEQRES 27 A 473 GLN GLY ASN ARG SER ALA SER VAL ARG ILE PRO LEU SER SEQRES 28 A 473 GLY GLY ASN PRO LYS ALA LYS ARG LEU GLU PHE ARG CYS SEQRES 29 A 473 PRO ASP ALA THR SER ASN PRO TYR LEU ALA PHE ALA ALA SEQRES 30 A 473 MET LEU CYS ALA GLY ILE ASP GLY ILE LYS ASN GLN ILE SEQRES 31 A 473 ASP PRO GLY GLU PRO LEU ASP VAL ASP ILE TYR ASP LEU SEQRES 32 A 473 SER PRO GLU GLU LEU ALA LYS ILE PRO SER THR PRO GLY SEQRES 33 A 473 SER LEU GLU ALA ALA LEU GLU ALA LEU GLU LYS ASP HIS SEQRES 34 A 473 GLU PHE LEU THR GLY THR GLY VAL PHE SER PRO ASP PHE SEQRES 35 A 473 VAL GLU SER TRP ILE GLU TYR LYS LEU ASP ASN GLU VAL SEQRES 36 A 473 ASN PRO MET ARG LEU ARG PRO HIS PRO TYR GLU PHE SER SEQRES 37 A 473 LEU TYR TYR ASP CYS HET ANP A 474 31 HET MN A 475 1 HET MN A 476 1 HET MN A 477 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MN MANGANESE (II) ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MN 3(MN 2+) FORMUL 6 HOH *24(H2 O) HELIX 1 1 THR A 4 GLU A 15 1 12 HELIX 2 2 ASP A 39 LEU A 41 5 3 HELIX 3 3 ASP A 42 THR A 47 5 6 HELIX 4 4 ALA A 62 GLU A 65 5 4 HELIX 5 5 PRO A 74 ALA A 77 5 4 HELIX 6 6 ASP A 106 THR A 121 1 16 HELIX 7 7 GLY A 159 THR A 163 5 5 HELIX 8 8 ALA A 191 PHE A 205 1 15 HELIX 9 9 LEU A 231 TYR A 252 1 22 HELIX 10 10 LYS A 289 PHE A 293 5 5 HELIX 11 11 SER A 294 ASN A 316 1 23 HELIX 12 12 ASN A 320 LEU A 325 1 6 HELIX 13 13 ASN A 354 LYS A 358 5 5 HELIX 14 14 ASN A 370 GLN A 389 1 20 HELIX 15 15 SER A 417 ASP A 428 1 12 HELIX 16 16 HIS A 429 GLY A 434 1 6 HELIX 17 17 SER A 439 GLU A 454 1 16 HELIX 18 18 GLU A 454 ARG A 461 1 8 HELIX 19 19 PRO A 464 TYR A 471 1 8 SHEET 1 A 5 TRP A 31 TYR A 37 0 SHEET 2 A 5 ILE A 19 ILE A 25 -1 N PHE A 24 O GLN A 32 SHEET 3 A 5 THR A 87 LYS A 95 1 O LEU A 88 N ASP A 21 SHEET 4 A 5 ASP A 67 PRO A 72 -1 N VAL A 71 O SER A 93 SHEET 5 A 5 ILE A 50 ASP A 53 -1 N ILE A 50 O MET A 70 SHEET 1 B 4 TRP A 31 TYR A 37 0 SHEET 2 B 4 ILE A 19 ILE A 25 -1 N PHE A 24 O GLN A 32 SHEET 3 B 4 THR A 87 LYS A 95 1 O LEU A 88 N ASP A 21 SHEET 4 B 4 THR A 78 ILE A 79 -1 N THR A 78 O SER A 89 SHEET 1 C 4 ASP A 229 LYS A 230 0 SHEET 2 C 4 THR A 126 ALA A 133 -1 N PHE A 129 O ASP A 229 SHEET 3 C 4 MET A 271 LYS A 279 -1 O TRP A 278 N THR A 126 SHEET 4 C 4 GLN A 282 PRO A 283 -1 O GLN A 282 N LYS A 279 SHEET 1 D 6 ASP A 229 LYS A 230 0 SHEET 2 D 6 THR A 126 ALA A 133 -1 N PHE A 129 O ASP A 229 SHEET 3 D 6 MET A 271 LYS A 279 -1 O TRP A 278 N THR A 126 SHEET 4 D 6 LEU A 360 PHE A 362 -1 O PHE A 362 N VAL A 273 SHEET 5 D 6 VAL A 346 ILE A 348 -1 N ARG A 347 O GLU A 361 SHEET 6 D 6 TYR A 337 GLN A 339 1 N SER A 338 O ILE A 348 SHEET 1 E 4 ILE A 209 HIS A 214 0 SHEET 2 E 4 GLN A 221 ILE A 226 -1 O GLY A 225 N LYS A 211 SHEET 3 E 4 PHE A 135 PHE A 138 -1 N PHE A 135 O ASN A 222 SHEET 4 E 4 THR A 255 THR A 257 -1 O THR A 255 N PHE A 138 SHEET 1 F 2 ASP A 140 GLN A 145 0 SHEET 2 F 2 SER A 150 ASP A 155 -1 O TYR A 151 N GLY A 144 LINK OE2 GLU A 134 MN MN A 475 1555 1555 2.63 LINK OE2 GLU A 215 MN MN A 475 1555 1555 2.68 LINK OE1 GLU A 223 MN MN A 475 1555 1555 2.54 LINK OE2 GLU A 361 MN MN A 477 1555 1555 2.07 LINK O2G ANP A 474 MN MN A 476 1555 1555 2.65 LINK O1G ANP A 474 MN MN A 477 1555 1555 2.02 CISPEP 1 GLY A 169 GLY A 170 0 -14.23 CISPEP 2 TYR A 182 PHE A 183 0 -6.71 CISPEP 3 ALA A 186 PRO A 187 0 8.10 CISPEP 4 PHE A 329 GLU A 330 0 -4.75 CISPEP 5 ALA A 331 PRO A 332 0 5.23 CISPEP 6 ASN A 388 GLN A 389 0 -12.95 SITE 1 AC1 17 TYR A 128 GLU A 132 GLU A 210 LYS A 211 SITE 2 AC1 17 ILE A 226 LYS A 227 PHE A 228 HIS A 274 SITE 3 AC1 17 SER A 276 ARG A 342 ARG A 347 LYS A 356 SITE 4 AC1 17 ARG A 359 GLU A 361 MN A 475 MN A 476 SITE 5 AC1 17 MN A 477 SITE 1 AC2 4 GLU A 134 GLU A 215 GLU A 223 ANP A 474 SITE 1 AC3 2 GLU A 132 ANP A 474 SITE 1 AC4 5 GLU A 132 HIS A 272 GLU A 361 ARG A 363 SITE 2 AC4 5 ANP A 474 CRYST1 132.016 132.016 202.130 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007575 0.004373 0.000000 0.00000 SCALE2 0.000000 0.008747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004947 0.00000