data_3NGD # _entry.id 3NGD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NGD pdb_00003ngd 10.2210/pdb3ngd/pdb NDB NA0605 ? ? RCSB RCSB059794 ? ? WWPDB D_1000059794 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ALZ 'Ternary Complex of hPoli with DNA and dCTP' unspecified PDB 3EPG 'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine' unspecified PDB 3EPI 'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTP' unspecified PDB 2FLL 'Ternary complex of human DNA polymerase iota with DNA and dTTP' unspecified PDB 3NGE 'Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NGD _pdbx_database_status.recvd_initial_deposition_date 2010-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Pence, M.G.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase {iota}.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 40666 _citation.page_last 40672 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20961860 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.183665 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pence, M.G.' 1 ? primary 'Choi, J.Y.' 2 ? primary 'Egli, M.' 3 ? primary 'Guengerich, F.P.' 4 ? # _cell.entry_id 3NGD _cell.length_a 97.999 _cell.length_b 97.999 _cell.length_c 202.552 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NGD _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'" 5506.581 2 ? ? ? ? 2 polymer man 'DNA polymerase iota' 47027.344 1 2.7.7.7 ? 'Catalytic Fragment, 1-420' ? 3 non-polymer syn "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" 467.157 1 ? ? ? ? 4 water nat water 18.015 64 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RAD30 homolog B, Eta2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DC)(DT)(6OG)(DG)(DG)(DG)(DT)(DC)(DC)(DT)(DA)(DG)(DG)(DA)(DC)(DC)(DOC)' TCTGGGGTCCTAGGACCC C,D ? 2 'polypeptide(L)' no no ;MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP FHLTLLSVCFCNLKALNTAK ; ;MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP FHLTLLSVCFCNLKALNTAK ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DT n 1 4 6OG n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DA n 1 16 DC n 1 17 DC n 1 18 DOC n 2 1 MET n 2 2 GLU n 2 3 LEU n 2 4 ALA n 2 5 ASP n 2 6 VAL n 2 7 GLY n 2 8 ALA n 2 9 ALA n 2 10 ALA n 2 11 SER n 2 12 SER n 2 13 GLN n 2 14 GLY n 2 15 VAL n 2 16 HIS n 2 17 ASP n 2 18 GLN n 2 19 VAL n 2 20 LEU n 2 21 PRO n 2 22 THR n 2 23 PRO n 2 24 ASN n 2 25 ALA n 2 26 SER n 2 27 SER n 2 28 ARG n 2 29 VAL n 2 30 ILE n 2 31 VAL n 2 32 HIS n 2 33 VAL n 2 34 ASP n 2 35 LEU n 2 36 ASP n 2 37 CYS n 2 38 PHE n 2 39 TYR n 2 40 ALA n 2 41 GLN n 2 42 VAL n 2 43 GLU n 2 44 MET n 2 45 ILE n 2 46 SER n 2 47 ASN n 2 48 PRO n 2 49 GLU n 2 50 LEU n 2 51 LYS n 2 52 ASP n 2 53 LYS n 2 54 PRO n 2 55 LEU n 2 56 GLY n 2 57 VAL n 2 58 GLN n 2 59 GLN n 2 60 LYS n 2 61 TYR n 2 62 LEU n 2 63 VAL n 2 64 VAL n 2 65 THR n 2 66 CYS n 2 67 ASN n 2 68 TYR n 2 69 GLU n 2 70 ALA n 2 71 ARG n 2 72 LYS n 2 73 LEU n 2 74 GLY n 2 75 VAL n 2 76 LYS n 2 77 LYS n 2 78 LEU n 2 79 MET n 2 80 ASN n 2 81 VAL n 2 82 ARG n 2 83 ASP n 2 84 ALA n 2 85 LYS n 2 86 GLU n 2 87 LYS n 2 88 CYS n 2 89 PRO n 2 90 GLN n 2 91 LEU n 2 92 VAL n 2 93 LEU n 2 94 VAL n 2 95 ASN n 2 96 GLY n 2 97 GLU n 2 98 ASP n 2 99 LEU n 2 100 THR n 2 101 ARG n 2 102 TYR n 2 103 ARG n 2 104 GLU n 2 105 MET n 2 106 SER n 2 107 TYR n 2 108 LYS n 2 109 VAL n 2 110 THR n 2 111 GLU n 2 112 LEU n 2 113 LEU n 2 114 GLU n 2 115 GLU n 2 116 PHE n 2 117 SER n 2 118 PRO n 2 119 VAL n 2 120 VAL n 2 121 GLU n 2 122 ARG n 2 123 LEU n 2 124 GLY n 2 125 PHE n 2 126 ASP n 2 127 GLU n 2 128 ASN n 2 129 PHE n 2 130 VAL n 2 131 ASP n 2 132 LEU n 2 133 THR n 2 134 GLU n 2 135 MET n 2 136 VAL n 2 137 GLU n 2 138 LYS n 2 139 ARG n 2 140 LEU n 2 141 GLN n 2 142 GLN n 2 143 LEU n 2 144 GLN n 2 145 SER n 2 146 ASP n 2 147 GLU n 2 148 LEU n 2 149 SER n 2 150 ALA n 2 151 VAL n 2 152 THR n 2 153 VAL n 2 154 SER n 2 155 GLY n 2 156 HIS n 2 157 VAL n 2 158 TYR n 2 159 ASN n 2 160 ASN n 2 161 GLN n 2 162 SER n 2 163 ILE n 2 164 ASN n 2 165 LEU n 2 166 LEU n 2 167 ASP n 2 168 VAL n 2 169 LEU n 2 170 HIS n 2 171 ILE n 2 172 ARG n 2 173 LEU n 2 174 LEU n 2 175 VAL n 2 176 GLY n 2 177 SER n 2 178 GLN n 2 179 ILE n 2 180 ALA n 2 181 ALA n 2 182 GLU n 2 183 MET n 2 184 ARG n 2 185 GLU n 2 186 ALA n 2 187 MET n 2 188 TYR n 2 189 ASN n 2 190 GLN n 2 191 LEU n 2 192 GLY n 2 193 LEU n 2 194 THR n 2 195 GLY n 2 196 CYS n 2 197 ALA n 2 198 GLY n 2 199 VAL n 2 200 ALA n 2 201 SER n 2 202 ASN n 2 203 LYS n 2 204 LEU n 2 205 LEU n 2 206 ALA n 2 207 LYS n 2 208 LEU n 2 209 VAL n 2 210 SER n 2 211 GLY n 2 212 VAL n 2 213 PHE n 2 214 LYS n 2 215 PRO n 2 216 ASN n 2 217 GLN n 2 218 GLN n 2 219 THR n 2 220 VAL n 2 221 LEU n 2 222 LEU n 2 223 PRO n 2 224 GLU n 2 225 SER n 2 226 CYS n 2 227 GLN n 2 228 HIS n 2 229 LEU n 2 230 ILE n 2 231 HIS n 2 232 SER n 2 233 LEU n 2 234 ASN n 2 235 HIS n 2 236 ILE n 2 237 LYS n 2 238 GLU n 2 239 ILE n 2 240 PRO n 2 241 GLY n 2 242 ILE n 2 243 GLY n 2 244 TYR n 2 245 LYS n 2 246 THR n 2 247 ALA n 2 248 LYS n 2 249 CYS n 2 250 LEU n 2 251 GLU n 2 252 ALA n 2 253 LEU n 2 254 GLY n 2 255 ILE n 2 256 ASN n 2 257 SER n 2 258 VAL n 2 259 ARG n 2 260 ASP n 2 261 LEU n 2 262 GLN n 2 263 THR n 2 264 PHE n 2 265 SER n 2 266 PRO n 2 267 LYS n 2 268 ILE n 2 269 LEU n 2 270 GLU n 2 271 LYS n 2 272 GLU n 2 273 LEU n 2 274 GLY n 2 275 ILE n 2 276 SER n 2 277 VAL n 2 278 ALA n 2 279 GLN n 2 280 ARG n 2 281 ILE n 2 282 GLN n 2 283 LYS n 2 284 LEU n 2 285 SER n 2 286 PHE n 2 287 GLY n 2 288 GLU n 2 289 ASP n 2 290 ASN n 2 291 SER n 2 292 PRO n 2 293 VAL n 2 294 ILE n 2 295 LEU n 2 296 SER n 2 297 GLY n 2 298 PRO n 2 299 PRO n 2 300 GLN n 2 301 SER n 2 302 PHE n 2 303 SER n 2 304 GLU n 2 305 GLU n 2 306 ASP n 2 307 SER n 2 308 PHE n 2 309 LYS n 2 310 LYS n 2 311 CYS n 2 312 SER n 2 313 SER n 2 314 GLU n 2 315 VAL n 2 316 GLU n 2 317 ALA n 2 318 LYS n 2 319 ASN n 2 320 LYS n 2 321 ILE n 2 322 GLU n 2 323 GLU n 2 324 LEU n 2 325 LEU n 2 326 ALA n 2 327 SER n 2 328 LEU n 2 329 LEU n 2 330 ASN n 2 331 ARG n 2 332 VAL n 2 333 CYS n 2 334 GLN n 2 335 ASP n 2 336 GLY n 2 337 ARG n 2 338 LYS n 2 339 PRO n 2 340 HIS n 2 341 THR n 2 342 VAL n 2 343 ARG n 2 344 LEU n 2 345 ILE n 2 346 ILE n 2 347 ARG n 2 348 ARG n 2 349 TYR n 2 350 SER n 2 351 SER n 2 352 GLU n 2 353 LYS n 2 354 HIS n 2 355 TYR n 2 356 GLY n 2 357 ARG n 2 358 GLU n 2 359 SER n 2 360 ARG n 2 361 GLN n 2 362 CYS n 2 363 PRO n 2 364 ILE n 2 365 PRO n 2 366 SER n 2 367 HIS n 2 368 VAL n 2 369 ILE n 2 370 GLN n 2 371 LYS n 2 372 LEU n 2 373 GLY n 2 374 THR n 2 375 GLY n 2 376 ASN n 2 377 TYR n 2 378 ASP n 2 379 VAL n 2 380 MET n 2 381 THR n 2 382 PRO n 2 383 MET n 2 384 VAL n 2 385 ASP n 2 386 ILE n 2 387 LEU n 2 388 MET n 2 389 LYS n 2 390 LEU n 2 391 PHE n 2 392 ARG n 2 393 ASN n 2 394 MET n 2 395 VAL n 2 396 ASN n 2 397 VAL n 2 398 LYS n 2 399 MET n 2 400 PRO n 2 401 PHE n 2 402 HIS n 2 403 LEU n 2 404 THR n 2 405 LEU n 2 406 LEU n 2 407 SER n 2 408 VAL n 2 409 CYS n 2 410 PHE n 2 411 CYS n 2 412 ASN n 2 413 LEU n 2 414 LYS n 2 415 ALA n 2 416 LEU n 2 417 ASN n 2 418 THR n 2 419 ALA n 2 420 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'POLI, RAD30B' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'Kanamycin resistant' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Gold (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pBG-Poli(bi)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POLI_HUMAN Q9UNA4 2 ;MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP FHLTLLSVCFCNLKALNTAK ; 1 ? 2 PDB 3NGD 3NGD 1 TCTGGGGTCCTAGGACCC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NGD A 1 ? 420 ? Q9UNA4 1 ? 420 ? 1 420 2 2 3NGD C 1 ? 18 ? 3NGD -4 ? 13 ? -4 13 3 2 3NGD D 1 ? 18 ? 3NGD 837 ? 854 ? 837 854 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6OG 'DNA linking' n ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; ? 'C11 H16 N5 O7 P' 361.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCP non-polymer . "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O13 P3' 467.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NGD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.2 M ammonium sulfate, 12.5% PEG 5000 monomethylether, 0.1 M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker Platinum 135' _diffrn_detector.pdbx_collection_date 2009-09-03 _diffrn_detector.details 'Bruker Montel Confocal Multilayer Mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Bruker Montel Confocal Multilayer Mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3NGD _reflns.observed_criterion_sigma_I 0.00 _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 80 _reflns.d_resolution_high 2.8 _reflns.number_obs 14304 _reflns.number_all ? _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.174 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 86.7 _reflns_shell.Rmerge_I_obs 0.872 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.1 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 627 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NGD _refine.ls_number_reflns_obs 13705 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.00 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 80.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 96.89 _refine.ls_R_factor_obs 0.21836 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21504 _refine.ls_R_factor_R_free 0.28377 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 704 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.922 _refine.correlation_coeff_Fo_to_Fc_free 0.856 _refine.B_iso_mean 46.048 _refine.aniso_B[1][1] 1.03 _refine.aniso_B[2][2] 1.03 _refine.aniso_B[3][3] -1.54 _refine.aniso_B[1][2] 0.51 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '2ALZ minus DNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.401 _refine.overall_SU_ML 0.320 _refine.overall_SU_B 34.522 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2898 _refine_hist.pdbx_number_atoms_nucleic_acid 309 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 3299 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 80.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 3312 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.695 2.121 ? 4534 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.744 5.000 ? 366 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.534 24.922 ? 128 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.725 15.000 ? 565 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.919 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 529 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 2310 'X-RAY DIFFRACTION' ? r_mcbond_it 0.464 1.500 ? 1844 'X-RAY DIFFRACTION' ? r_mcangle_it 0.928 2.000 ? 2987 'X-RAY DIFFRACTION' ? r_scbond_it 1.607 3.000 ? 1468 'X-RAY DIFFRACTION' ? r_scangle_it 2.689 4.500 ? 1547 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 905 _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.percent_reflns_obs 88.58 _refine_ls_shell.R_factor_R_free 0.340 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NGD _struct.title 'Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase Iota' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NGD _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'Hoogsteen Base Pair, Nucleoside Triphosphate, Y-family DNA polymerase, Translesion Synthesis, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 37 ? ASN C 47 ? CYS A 37 ASN A 47 1 ? 11 HELX_P HELX_P2 2 PRO C 48 ? LYS C 51 ? PRO A 48 LYS A 51 5 ? 4 HELX_P HELX_P3 3 ASN C 67 ? LYS C 72 ? ASN A 67 LYS A 72 1 ? 6 HELX_P HELX_P4 4 VAL C 81 ? CYS C 88 ? VAL A 81 CYS A 88 1 ? 8 HELX_P HELX_P5 5 LEU C 99 ? SER C 117 ? LEU A 99 SER A 117 1 ? 19 HELX_P HELX_P6 6 LEU C 132 ? LEU C 143 ? LEU A 132 LEU A 143 1 ? 12 HELX_P HELX_P7 7 SER C 145 ? SER C 149 ? SER A 145 SER A 149 5 ? 5 HELX_P HELX_P8 8 ASN C 159 ? GLN C 161 ? ASN A 159 GLN A 161 5 ? 3 HELX_P HELX_P9 9 ASP C 167 ? GLY C 192 ? ASP A 167 GLY A 192 1 ? 26 HELX_P HELX_P10 10 ASN C 202 ? GLY C 211 ? ASN A 202 GLY A 211 1 ? 10 HELX_P HELX_P11 11 LEU C 222 ? GLU C 224 ? LEU A 222 GLU A 224 5 ? 3 HELX_P HELX_P12 12 SER C 225 ? LEU C 233 ? SER A 225 LEU A 233 1 ? 9 HELX_P HELX_P13 13 HIS C 235 ? ILE C 239 ? HIS A 235 ILE A 239 5 ? 5 HELX_P HELX_P14 14 GLY C 243 ? ALA C 252 ? GLY A 243 ALA A 252 1 ? 10 HELX_P HELX_P15 15 SER C 257 ? THR C 263 ? SER A 257 THR A 263 1 ? 7 HELX_P HELX_P16 16 SER C 265 ? GLY C 274 ? SER A 265 GLY A 274 1 ? 10 HELX_P HELX_P17 17 GLY C 274 ? PHE C 286 ? GLY A 274 PHE A 286 1 ? 13 HELX_P HELX_P18 18 VAL C 315 ? GLY C 336 ? VAL A 315 GLY A 336 1 ? 22 HELX_P HELX_P19 19 PRO C 365 ? ILE C 369 ? PRO A 365 ILE A 369 5 ? 5 HELX_P HELX_P20 20 PRO C 382 ? ASN C 393 ? PRO A 382 ASN A 393 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 17 "O3'" ? ? ? 1_555 A DOC 18 P ? ? C DC 12 C DOC 13 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale2 covale one ? B 6OG 4 "O3'" ? ? ? 1_555 B DG 5 P ? ? D 6OG 840 D DG 841 1_555 ? ? ? ? ? ? ? 1.576 ? ? hydrog1 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 7 D DT 847 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 7 D DT 847 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 10 N3 ? ? C DG 8 D DC 846 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 10 O2 ? ? C DG 8 D DC 846 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 10 N4 ? ? C DG 8 D DC 846 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 9 N3 ? ? C DG 9 D DC 845 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 9 O2 ? ? C DG 9 D DC 845 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 9 N4 ? ? C DG 9 D DC 845 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 8 N3 ? ? C DA 10 D DT 844 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 8 O4 ? ? C DA 10 D DT 844 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 11 D DG 843 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 11 D DG 843 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 11 D DG 843 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 12 D DG 842 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 12 D DG 842 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 12 D DG 842 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DOC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DOC 13 D DG 841 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DOC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DOC 13 D DG 841 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DOC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DOC 13 D DG 841 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 214 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 214 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 215 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 215 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.37 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 120 ? LEU C 123 ? VAL A 120 LEU A 123 A 2 GLU C 127 ? ASP C 131 ? GLU A 127 ASP A 131 A 3 ILE C 30 ? LEU C 35 ? ILE A 30 LEU A 35 A 4 GLY C 195 ? ALA C 200 ? GLY A 195 ALA A 200 A 5 GLN C 218 ? VAL C 220 ? GLN A 218 VAL A 220 A 6 HIS C 156 ? VAL C 157 ? HIS A 156 VAL A 157 B 1 MET C 79 ? ASN C 80 ? MET A 79 ASN A 80 B 2 LEU C 62 ? CYS C 66 ? LEU A 62 CYS A 66 B 3 LEU C 55 ? GLN C 59 ? LEU A 55 GLN A 59 B 4 VAL C 92 ? ASN C 95 ? VAL A 92 ASN A 95 C 1 SER C 301 ? SER C 307 ? SER A 301 SER A 307 C 2 LEU C 405 ? LYS C 414 ? LEU A 405 LYS A 414 C 3 LYS C 338 ? ARG C 347 ? LYS A 338 ARG A 347 C 4 ARG C 357 ? PRO C 363 ? ARG A 357 PRO A 363 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU C 121 ? N GLU A 121 O PHE C 129 ? O PHE A 129 A 2 3 O ASN C 128 ? O ASN A 128 N VAL C 33 ? N VAL A 33 A 3 4 N ASP C 34 ? N ASP A 34 O CYS C 196 ? O CYS A 196 A 4 5 N VAL C 199 ? N VAL A 199 O THR C 219 ? O THR A 219 A 5 6 O GLN C 218 ? O GLN A 218 N HIS C 156 ? N HIS A 156 B 1 2 O MET C 79 ? O MET A 79 N VAL C 63 ? N VAL A 63 B 2 3 O THR C 65 ? O THR A 65 N VAL C 57 ? N VAL A 57 B 3 4 N GLN C 58 ? N GLN A 58 O VAL C 94 ? O VAL A 94 C 1 2 N PHE C 302 ? N PHE A 302 O PHE C 410 ? O PHE A 410 C 2 3 O LYS C 414 ? O LYS A 414 N LYS C 338 ? N LYS A 338 C 3 4 N ILE C 346 ? N ILE A 346 O GLU C 358 ? O GLU A 358 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id DCP _struct_site.pdbx_auth_seq_id 875 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE DCP A 875' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 LEU C 35 ? LEU A 35 . ? 1_555 ? 2 AC1 14 CYS C 37 ? CYS A 37 . ? 1_555 ? 3 AC1 14 PHE C 38 ? PHE A 38 . ? 1_555 ? 4 AC1 14 TYR C 39 ? TYR A 39 . ? 1_555 ? 5 AC1 14 VAL C 64 ? VAL A 64 . ? 1_555 ? 6 AC1 14 THR C 65 ? THR A 65 . ? 1_555 ? 7 AC1 14 TYR C 68 ? TYR A 68 . ? 1_555 ? 8 AC1 14 ARG C 71 ? ARG A 71 . ? 1_555 ? 9 AC1 14 LYS C 77 ? LYS A 77 . ? 1_555 ? 10 AC1 14 ASP C 126 ? ASP A 126 . ? 1_555 ? 11 AC1 14 LYS C 214 ? LYS A 214 . ? 1_555 ? 12 AC1 14 HOH G . ? HOH A 467 . ? 1_555 ? 13 AC1 14 DOC A 18 ? DOC C 13 . ? 1_555 ? 14 AC1 14 6OG B 4 ? 6OG D 840 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NGD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NGD _atom_sites.fract_transf_matrix[1][1] 0.010204 _atom_sites.fract_transf_matrix[1][2] 0.005891 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011783 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004937 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -4 ? ? ? C . n A 1 2 DC 2 -3 ? ? ? C . n A 1 3 DT 3 -2 ? ? ? C . n A 1 4 6OG 4 -1 ? ? ? C . n A 1 5 DG 5 0 ? ? ? C . n A 1 6 DG 6 1 ? ? ? C . n A 1 7 DG 7 2 ? ? ? C . n A 1 8 DT 8 3 ? ? ? C . n A 1 9 DC 9 4 ? ? ? C . n A 1 10 DC 10 5 ? ? ? C . n A 1 11 DT 11 6 ? ? ? C . n A 1 12 DA 12 7 7 DA DA C . n A 1 13 DG 13 8 8 DG DG C . n A 1 14 DG 14 9 9 DG DG C . n A 1 15 DA 15 10 10 DA DA C . n A 1 16 DC 16 11 11 DC DC C . n A 1 17 DC 17 12 12 DC DC C . n A 1 18 DOC 18 13 13 DOC DOC C . n B 1 1 DT 1 837 ? ? ? D . n B 1 2 DC 2 838 ? ? ? D . n B 1 3 DT 3 839 ? ? ? D . n B 1 4 6OG 4 840 840 6OG 6OG D . n B 1 5 DG 5 841 841 DG DG D . n B 1 6 DG 6 842 842 DG DG D . n B 1 7 DG 7 843 843 DG DG D . n B 1 8 DT 8 844 844 DT DT D . n B 1 9 DC 9 845 845 DC DC D . n B 1 10 DC 10 846 846 DC DC D . n B 1 11 DT 11 847 847 DT DT D . n B 1 12 DA 12 848 ? ? ? D . n B 1 13 DG 13 849 ? ? ? D . n B 1 14 DG 14 850 ? ? ? D . n B 1 15 DA 15 851 ? ? ? D . n B 1 16 DC 16 852 ? ? ? D . n B 1 17 DC 17 853 ? ? ? D . n B 1 18 DOC 18 854 ? ? ? D . n C 2 1 MET 1 1 ? ? ? A . n C 2 2 GLU 2 2 ? ? ? A . n C 2 3 LEU 3 3 ? ? ? A . n C 2 4 ALA 4 4 ? ? ? A . n C 2 5 ASP 5 5 ? ? ? A . n C 2 6 VAL 6 6 ? ? ? A . n C 2 7 GLY 7 7 ? ? ? A . n C 2 8 ALA 8 8 ? ? ? A . n C 2 9 ALA 9 9 ? ? ? A . n C 2 10 ALA 10 10 ? ? ? A . n C 2 11 SER 11 11 ? ? ? A . n C 2 12 SER 12 12 ? ? ? A . n C 2 13 GLN 13 13 ? ? ? A . n C 2 14 GLY 14 14 ? ? ? A . n C 2 15 VAL 15 15 ? ? ? A . n C 2 16 HIS 16 16 ? ? ? A . n C 2 17 ASP 17 17 ? ? ? A . n C 2 18 GLN 18 18 ? ? ? A . n C 2 19 VAL 19 19 ? ? ? A . n C 2 20 LEU 20 20 ? ? ? A . n C 2 21 PRO 21 21 ? ? ? A . n C 2 22 THR 22 22 ? ? ? A . n C 2 23 PRO 23 23 ? ? ? A . n C 2 24 ASN 24 24 ? ? ? A . n C 2 25 ALA 25 25 ? ? ? A . n C 2 26 SER 26 26 26 SER SER A . n C 2 27 SER 27 27 27 SER SER A . n C 2 28 ARG 28 28 28 ARG ARG A . n C 2 29 VAL 29 29 29 VAL VAL A . n C 2 30 ILE 30 30 30 ILE ILE A . n C 2 31 VAL 31 31 31 VAL VAL A . n C 2 32 HIS 32 32 32 HIS HIS A . n C 2 33 VAL 33 33 33 VAL VAL A . n C 2 34 ASP 34 34 34 ASP ASP A . n C 2 35 LEU 35 35 35 LEU LEU A . n C 2 36 ASP 36 36 36 ASP ASP A . n C 2 37 CYS 37 37 37 CYS CYS A . n C 2 38 PHE 38 38 38 PHE PHE A . n C 2 39 TYR 39 39 39 TYR TYR A . n C 2 40 ALA 40 40 40 ALA ALA A . n C 2 41 GLN 41 41 41 GLN GLN A . n C 2 42 VAL 42 42 42 VAL VAL A . n C 2 43 GLU 43 43 43 GLU GLU A . n C 2 44 MET 44 44 44 MET MET A . n C 2 45 ILE 45 45 45 ILE ILE A . n C 2 46 SER 46 46 46 SER SER A . n C 2 47 ASN 47 47 47 ASN ASN A . n C 2 48 PRO 48 48 48 PRO PRO A . n C 2 49 GLU 49 49 49 GLU GLU A . n C 2 50 LEU 50 50 50 LEU LEU A . n C 2 51 LYS 51 51 51 LYS LYS A . n C 2 52 ASP 52 52 52 ASP ASP A . n C 2 53 LYS 53 53 53 LYS LYS A . n C 2 54 PRO 54 54 54 PRO PRO A . n C 2 55 LEU 55 55 55 LEU LEU A . n C 2 56 GLY 56 56 56 GLY GLY A . n C 2 57 VAL 57 57 57 VAL VAL A . n C 2 58 GLN 58 58 58 GLN GLN A . n C 2 59 GLN 59 59 59 GLN GLN A . n C 2 60 LYS 60 60 60 LYS LYS A . n C 2 61 TYR 61 61 61 TYR TYR A . n C 2 62 LEU 62 62 62 LEU LEU A . n C 2 63 VAL 63 63 63 VAL VAL A . n C 2 64 VAL 64 64 64 VAL VAL A . n C 2 65 THR 65 65 65 THR THR A . n C 2 66 CYS 66 66 66 CYS CYS A . n C 2 67 ASN 67 67 67 ASN ASN A . n C 2 68 TYR 68 68 68 TYR TYR A . n C 2 69 GLU 69 69 69 GLU GLU A . n C 2 70 ALA 70 70 70 ALA ALA A . n C 2 71 ARG 71 71 71 ARG ARG A . n C 2 72 LYS 72 72 72 LYS LYS A . n C 2 73 LEU 73 73 73 LEU LEU A . n C 2 74 GLY 74 74 74 GLY GLY A . n C 2 75 VAL 75 75 75 VAL VAL A . n C 2 76 LYS 76 76 76 LYS LYS A . n C 2 77 LYS 77 77 77 LYS LYS A . n C 2 78 LEU 78 78 78 LEU LEU A . n C 2 79 MET 79 79 79 MET MET A . n C 2 80 ASN 80 80 80 ASN ASN A . n C 2 81 VAL 81 81 81 VAL VAL A . n C 2 82 ARG 82 82 82 ARG ARG A . n C 2 83 ASP 83 83 83 ASP ASP A . n C 2 84 ALA 84 84 84 ALA ALA A . n C 2 85 LYS 85 85 85 LYS LYS A . n C 2 86 GLU 86 86 86 GLU GLU A . n C 2 87 LYS 87 87 87 LYS LYS A . n C 2 88 CYS 88 88 88 CYS CYS A . n C 2 89 PRO 89 89 89 PRO PRO A . n C 2 90 GLN 90 90 90 GLN GLN A . n C 2 91 LEU 91 91 91 LEU LEU A . n C 2 92 VAL 92 92 92 VAL VAL A . n C 2 93 LEU 93 93 93 LEU LEU A . n C 2 94 VAL 94 94 94 VAL VAL A . n C 2 95 ASN 95 95 95 ASN ASN A . n C 2 96 GLY 96 96 96 GLY GLY A . n C 2 97 GLU 97 97 97 GLU GLU A . n C 2 98 ASP 98 98 98 ASP ASP A . n C 2 99 LEU 99 99 99 LEU LEU A . n C 2 100 THR 100 100 100 THR THR A . n C 2 101 ARG 101 101 101 ARG ARG A . n C 2 102 TYR 102 102 102 TYR TYR A . n C 2 103 ARG 103 103 103 ARG ARG A . n C 2 104 GLU 104 104 104 GLU GLU A . n C 2 105 MET 105 105 105 MET MET A . n C 2 106 SER 106 106 106 SER SER A . n C 2 107 TYR 107 107 107 TYR TYR A . n C 2 108 LYS 108 108 108 LYS LYS A . n C 2 109 VAL 109 109 109 VAL VAL A . n C 2 110 THR 110 110 110 THR THR A . n C 2 111 GLU 111 111 111 GLU GLU A . n C 2 112 LEU 112 112 112 LEU LEU A . n C 2 113 LEU 113 113 113 LEU LEU A . n C 2 114 GLU 114 114 114 GLU GLU A . n C 2 115 GLU 115 115 115 GLU GLU A . n C 2 116 PHE 116 116 116 PHE PHE A . n C 2 117 SER 117 117 117 SER SER A . n C 2 118 PRO 118 118 118 PRO PRO A . n C 2 119 VAL 119 119 119 VAL VAL A . n C 2 120 VAL 120 120 120 VAL VAL A . n C 2 121 GLU 121 121 121 GLU GLU A . n C 2 122 ARG 122 122 122 ARG ARG A . n C 2 123 LEU 123 123 123 LEU LEU A . n C 2 124 GLY 124 124 124 GLY GLY A . n C 2 125 PHE 125 125 125 PHE PHE A . n C 2 126 ASP 126 126 126 ASP ASP A . n C 2 127 GLU 127 127 127 GLU GLU A . n C 2 128 ASN 128 128 128 ASN ASN A . n C 2 129 PHE 129 129 129 PHE PHE A . n C 2 130 VAL 130 130 130 VAL VAL A . n C 2 131 ASP 131 131 131 ASP ASP A . n C 2 132 LEU 132 132 132 LEU LEU A . n C 2 133 THR 133 133 133 THR THR A . n C 2 134 GLU 134 134 134 GLU GLU A . n C 2 135 MET 135 135 135 MET MET A . n C 2 136 VAL 136 136 136 VAL VAL A . n C 2 137 GLU 137 137 137 GLU GLU A . n C 2 138 LYS 138 138 138 LYS LYS A . n C 2 139 ARG 139 139 139 ARG ARG A . n C 2 140 LEU 140 140 140 LEU LEU A . n C 2 141 GLN 141 141 141 GLN GLN A . n C 2 142 GLN 142 142 142 GLN GLN A . n C 2 143 LEU 143 143 143 LEU LEU A . n C 2 144 GLN 144 144 144 GLN GLN A . n C 2 145 SER 145 145 145 SER SER A . n C 2 146 ASP 146 146 146 ASP ASP A . n C 2 147 GLU 147 147 147 GLU GLU A . n C 2 148 LEU 148 148 148 LEU LEU A . n C 2 149 SER 149 149 149 SER SER A . n C 2 150 ALA 150 150 150 ALA ALA A . n C 2 151 VAL 151 151 151 VAL VAL A . n C 2 152 THR 152 152 152 THR THR A . n C 2 153 VAL 153 153 153 VAL VAL A . n C 2 154 SER 154 154 154 SER SER A . n C 2 155 GLY 155 155 155 GLY GLY A . n C 2 156 HIS 156 156 156 HIS HIS A . n C 2 157 VAL 157 157 157 VAL VAL A . n C 2 158 TYR 158 158 158 TYR TYR A . n C 2 159 ASN 159 159 159 ASN ASN A . n C 2 160 ASN 160 160 160 ASN ASN A . n C 2 161 GLN 161 161 161 GLN GLN A . n C 2 162 SER 162 162 162 SER SER A . n C 2 163 ILE 163 163 163 ILE ILE A . n C 2 164 ASN 164 164 164 ASN ASN A . n C 2 165 LEU 165 165 165 LEU LEU A . n C 2 166 LEU 166 166 166 LEU LEU A . n C 2 167 ASP 167 167 167 ASP ASP A . n C 2 168 VAL 168 168 168 VAL VAL A . n C 2 169 LEU 169 169 169 LEU LEU A . n C 2 170 HIS 170 170 170 HIS HIS A . n C 2 171 ILE 171 171 171 ILE ILE A . n C 2 172 ARG 172 172 172 ARG ARG A . n C 2 173 LEU 173 173 173 LEU LEU A . n C 2 174 LEU 174 174 174 LEU LEU A . n C 2 175 VAL 175 175 175 VAL VAL A . n C 2 176 GLY 176 176 176 GLY GLY A . n C 2 177 SER 177 177 177 SER SER A . n C 2 178 GLN 178 178 178 GLN GLN A . n C 2 179 ILE 179 179 179 ILE ILE A . n C 2 180 ALA 180 180 180 ALA ALA A . n C 2 181 ALA 181 181 181 ALA ALA A . n C 2 182 GLU 182 182 182 GLU GLU A . n C 2 183 MET 183 183 183 MET MET A . n C 2 184 ARG 184 184 184 ARG ARG A . n C 2 185 GLU 185 185 185 GLU GLU A . n C 2 186 ALA 186 186 186 ALA ALA A . n C 2 187 MET 187 187 187 MET MET A . n C 2 188 TYR 188 188 188 TYR TYR A . n C 2 189 ASN 189 189 189 ASN ASN A . n C 2 190 GLN 190 190 190 GLN GLN A . n C 2 191 LEU 191 191 191 LEU LEU A . n C 2 192 GLY 192 192 192 GLY GLY A . n C 2 193 LEU 193 193 193 LEU LEU A . n C 2 194 THR 194 194 194 THR THR A . n C 2 195 GLY 195 195 195 GLY GLY A . n C 2 196 CYS 196 196 196 CYS CYS A . n C 2 197 ALA 197 197 197 ALA ALA A . n C 2 198 GLY 198 198 198 GLY GLY A . n C 2 199 VAL 199 199 199 VAL VAL A . n C 2 200 ALA 200 200 200 ALA ALA A . n C 2 201 SER 201 201 201 SER SER A . n C 2 202 ASN 202 202 202 ASN ASN A . n C 2 203 LYS 203 203 203 LYS LYS A . n C 2 204 LEU 204 204 204 LEU LEU A . n C 2 205 LEU 205 205 205 LEU LEU A . n C 2 206 ALA 206 206 206 ALA ALA A . n C 2 207 LYS 207 207 207 LYS LYS A . n C 2 208 LEU 208 208 208 LEU LEU A . n C 2 209 VAL 209 209 209 VAL VAL A . n C 2 210 SER 210 210 210 SER SER A . n C 2 211 GLY 211 211 211 GLY GLY A . n C 2 212 VAL 212 212 212 VAL VAL A . n C 2 213 PHE 213 213 213 PHE PHE A . n C 2 214 LYS 214 214 214 LYS LYS A . n C 2 215 PRO 215 215 215 PRO PRO A . n C 2 216 ASN 216 216 216 ASN ASN A . n C 2 217 GLN 217 217 217 GLN GLN A . n C 2 218 GLN 218 218 218 GLN GLN A . n C 2 219 THR 219 219 219 THR THR A . n C 2 220 VAL 220 220 220 VAL VAL A . n C 2 221 LEU 221 221 221 LEU LEU A . n C 2 222 LEU 222 222 222 LEU LEU A . n C 2 223 PRO 223 223 223 PRO PRO A . n C 2 224 GLU 224 224 224 GLU GLU A . n C 2 225 SER 225 225 225 SER SER A . n C 2 226 CYS 226 226 226 CYS CYS A . n C 2 227 GLN 227 227 227 GLN GLN A . n C 2 228 HIS 228 228 228 HIS HIS A . n C 2 229 LEU 229 229 229 LEU LEU A . n C 2 230 ILE 230 230 230 ILE ILE A . n C 2 231 HIS 231 231 231 HIS HIS A . n C 2 232 SER 232 232 232 SER SER A . n C 2 233 LEU 233 233 233 LEU LEU A . n C 2 234 ASN 234 234 234 ASN ASN A . n C 2 235 HIS 235 235 235 HIS HIS A . n C 2 236 ILE 236 236 236 ILE ILE A . n C 2 237 LYS 237 237 237 LYS LYS A . n C 2 238 GLU 238 238 238 GLU GLU A . n C 2 239 ILE 239 239 239 ILE ILE A . n C 2 240 PRO 240 240 240 PRO PRO A . n C 2 241 GLY 241 241 241 GLY GLY A . n C 2 242 ILE 242 242 242 ILE ILE A . n C 2 243 GLY 243 243 243 GLY GLY A . n C 2 244 TYR 244 244 244 TYR TYR A . n C 2 245 LYS 245 245 245 LYS LYS A . n C 2 246 THR 246 246 246 THR THR A . n C 2 247 ALA 247 247 247 ALA ALA A . n C 2 248 LYS 248 248 248 LYS LYS A . n C 2 249 CYS 249 249 249 CYS CYS A . n C 2 250 LEU 250 250 250 LEU LEU A . n C 2 251 GLU 251 251 251 GLU GLU A . n C 2 252 ALA 252 252 252 ALA ALA A . n C 2 253 LEU 253 253 253 LEU LEU A . n C 2 254 GLY 254 254 254 GLY GLY A . n C 2 255 ILE 255 255 255 ILE ILE A . n C 2 256 ASN 256 256 256 ASN ASN A . n C 2 257 SER 257 257 257 SER SER A . n C 2 258 VAL 258 258 258 VAL VAL A . n C 2 259 ARG 259 259 259 ARG ARG A . n C 2 260 ASP 260 260 260 ASP ASP A . n C 2 261 LEU 261 261 261 LEU LEU A . n C 2 262 GLN 262 262 262 GLN GLN A . n C 2 263 THR 263 263 263 THR THR A . n C 2 264 PHE 264 264 264 PHE PHE A . n C 2 265 SER 265 265 265 SER SER A . n C 2 266 PRO 266 266 266 PRO PRO A . n C 2 267 LYS 267 267 267 LYS LYS A . n C 2 268 ILE 268 268 268 ILE ILE A . n C 2 269 LEU 269 269 269 LEU LEU A . n C 2 270 GLU 270 270 270 GLU GLU A . n C 2 271 LYS 271 271 271 LYS LYS A . n C 2 272 GLU 272 272 272 GLU GLU A . n C 2 273 LEU 273 273 273 LEU LEU A . n C 2 274 GLY 274 274 274 GLY GLY A . n C 2 275 ILE 275 275 275 ILE ILE A . n C 2 276 SER 276 276 276 SER SER A . n C 2 277 VAL 277 277 277 VAL VAL A . n C 2 278 ALA 278 278 278 ALA ALA A . n C 2 279 GLN 279 279 279 GLN GLN A . n C 2 280 ARG 280 280 280 ARG ARG A . n C 2 281 ILE 281 281 281 ILE ILE A . n C 2 282 GLN 282 282 282 GLN GLN A . n C 2 283 LYS 283 283 283 LYS LYS A . n C 2 284 LEU 284 284 284 LEU LEU A . n C 2 285 SER 285 285 285 SER SER A . n C 2 286 PHE 286 286 286 PHE PHE A . n C 2 287 GLY 287 287 287 GLY GLY A . n C 2 288 GLU 288 288 288 GLU GLU A . n C 2 289 ASP 289 289 289 ASP ASP A . n C 2 290 ASN 290 290 290 ASN ASN A . n C 2 291 SER 291 291 291 SER SER A . n C 2 292 PRO 292 292 292 PRO PRO A . n C 2 293 VAL 293 293 293 VAL VAL A . n C 2 294 ILE 294 294 294 ILE ILE A . n C 2 295 LEU 295 295 295 LEU LEU A . n C 2 296 SER 296 296 296 SER SER A . n C 2 297 GLY 297 297 297 GLY GLY A . n C 2 298 PRO 298 298 298 PRO PRO A . n C 2 299 PRO 299 299 299 PRO PRO A . n C 2 300 GLN 300 300 300 GLN GLN A . n C 2 301 SER 301 301 301 SER SER A . n C 2 302 PHE 302 302 302 PHE PHE A . n C 2 303 SER 303 303 303 SER SER A . n C 2 304 GLU 304 304 304 GLU GLU A . n C 2 305 GLU 305 305 305 GLU GLU A . n C 2 306 ASP 306 306 306 ASP ASP A . n C 2 307 SER 307 307 307 SER SER A . n C 2 308 PHE 308 308 308 PHE PHE A . n C 2 309 LYS 309 309 309 LYS LYS A . n C 2 310 LYS 310 310 310 LYS LYS A . n C 2 311 CYS 311 311 311 CYS CYS A . n C 2 312 SER 312 312 312 SER SER A . n C 2 313 SER 313 313 313 SER SER A . n C 2 314 GLU 314 314 314 GLU GLU A . n C 2 315 VAL 315 315 315 VAL VAL A . n C 2 316 GLU 316 316 316 GLU GLU A . n C 2 317 ALA 317 317 317 ALA ALA A . n C 2 318 LYS 318 318 318 LYS LYS A . n C 2 319 ASN 319 319 319 ASN ASN A . n C 2 320 LYS 320 320 320 LYS LYS A . n C 2 321 ILE 321 321 321 ILE ILE A . n C 2 322 GLU 322 322 322 GLU GLU A . n C 2 323 GLU 323 323 323 GLU GLU A . n C 2 324 LEU 324 324 324 LEU LEU A . n C 2 325 LEU 325 325 325 LEU LEU A . n C 2 326 ALA 326 326 326 ALA ALA A . n C 2 327 SER 327 327 327 SER SER A . n C 2 328 LEU 328 328 328 LEU LEU A . n C 2 329 LEU 329 329 329 LEU LEU A . n C 2 330 ASN 330 330 330 ASN ASN A . n C 2 331 ARG 331 331 331 ARG ARG A . n C 2 332 VAL 332 332 332 VAL VAL A . n C 2 333 CYS 333 333 333 CYS CYS A . n C 2 334 GLN 334 334 334 GLN GLN A . n C 2 335 ASP 335 335 335 ASP ASP A . n C 2 336 GLY 336 336 336 GLY GLY A . n C 2 337 ARG 337 337 337 ARG ARG A . n C 2 338 LYS 338 338 338 LYS LYS A . n C 2 339 PRO 339 339 339 PRO PRO A . n C 2 340 HIS 340 340 340 HIS HIS A . n C 2 341 THR 341 341 341 THR THR A . n C 2 342 VAL 342 342 342 VAL VAL A . n C 2 343 ARG 343 343 343 ARG ARG A . n C 2 344 LEU 344 344 344 LEU LEU A . n C 2 345 ILE 345 345 345 ILE ILE A . n C 2 346 ILE 346 346 346 ILE ILE A . n C 2 347 ARG 347 347 347 ARG ARG A . n C 2 348 ARG 348 348 348 ARG ARG A . n C 2 349 TYR 349 349 349 TYR TYR A . n C 2 350 SER 350 350 350 SER SER A . n C 2 351 SER 351 351 351 SER SER A . n C 2 352 GLU 352 352 ? ? ? A . n C 2 353 LYS 353 353 ? ? ? A . n C 2 354 HIS 354 354 ? ? ? A . n C 2 355 TYR 355 355 ? ? ? A . n C 2 356 GLY 356 356 356 GLY GLY A . n C 2 357 ARG 357 357 357 ARG ARG A . n C 2 358 GLU 358 358 358 GLU GLU A . n C 2 359 SER 359 359 359 SER SER A . n C 2 360 ARG 360 360 360 ARG ARG A . n C 2 361 GLN 361 361 361 GLN GLN A . n C 2 362 CYS 362 362 362 CYS CYS A . n C 2 363 PRO 363 363 363 PRO PRO A . n C 2 364 ILE 364 364 364 ILE ILE A . n C 2 365 PRO 365 365 365 PRO PRO A . n C 2 366 SER 366 366 366 SER SER A . n C 2 367 HIS 367 367 367 HIS HIS A . n C 2 368 VAL 368 368 368 VAL VAL A . n C 2 369 ILE 369 369 369 ILE ILE A . n C 2 370 GLN 370 370 370 GLN GLN A . n C 2 371 LYS 371 371 371 LYS LYS A . n C 2 372 LEU 372 372 ? ? ? A . n C 2 373 GLY 373 373 ? ? ? A . n C 2 374 THR 374 374 ? ? ? A . n C 2 375 GLY 375 375 ? ? ? A . n C 2 376 ASN 376 376 ? ? ? A . n C 2 377 TYR 377 377 ? ? ? A . n C 2 378 ASP 378 378 378 ASP ASP A . n C 2 379 VAL 379 379 379 VAL VAL A . n C 2 380 MET 380 380 380 MET MET A . n C 2 381 THR 381 381 381 THR THR A . n C 2 382 PRO 382 382 382 PRO PRO A . n C 2 383 MET 383 383 383 MET MET A . n C 2 384 VAL 384 384 384 VAL VAL A . n C 2 385 ASP 385 385 385 ASP ASP A . n C 2 386 ILE 386 386 386 ILE ILE A . n C 2 387 LEU 387 387 387 LEU LEU A . n C 2 388 MET 388 388 388 MET MET A . n C 2 389 LYS 389 389 389 LYS LYS A . n C 2 390 LEU 390 390 390 LEU LEU A . n C 2 391 PHE 391 391 391 PHE PHE A . n C 2 392 ARG 392 392 392 ARG ARG A . n C 2 393 ASN 393 393 393 ASN ASN A . n C 2 394 MET 394 394 394 MET MET A . n C 2 395 VAL 395 395 ? ? ? A . n C 2 396 ASN 396 396 ? ? ? A . n C 2 397 VAL 397 397 ? ? ? A . n C 2 398 LYS 398 398 ? ? ? A . n C 2 399 MET 399 399 ? ? ? A . n C 2 400 PRO 400 400 ? ? ? A . n C 2 401 PHE 401 401 ? ? ? A . n C 2 402 HIS 402 402 ? ? ? A . n C 2 403 LEU 403 403 ? ? ? A . n C 2 404 THR 404 404 404 THR THR A . n C 2 405 LEU 405 405 405 LEU LEU A . n C 2 406 LEU 406 406 406 LEU LEU A . n C 2 407 SER 407 407 407 SER SER A . n C 2 408 VAL 408 408 408 VAL VAL A . n C 2 409 CYS 409 409 409 CYS CYS A . n C 2 410 PHE 410 410 410 PHE PHE A . n C 2 411 CYS 411 411 411 CYS CYS A . n C 2 412 ASN 412 412 412 ASN ASN A . n C 2 413 LEU 413 413 413 LEU LEU A . n C 2 414 LYS 414 414 414 LYS LYS A . n C 2 415 ALA 415 415 ? ? ? A . n C 2 416 LEU 416 416 ? ? ? A . n C 2 417 ASN 417 417 ? ? ? A . n C 2 418 THR 418 418 ? ? ? A . n C 2 419 ALA 419 419 ? ? ? A . n C 2 420 LYS 420 420 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 DCP 1 875 875 DCP DCP A . E 4 HOH 1 14 12 HOH HOH C . E 4 HOH 2 27 27 HOH HOH C . E 4 HOH 3 35 35 HOH HOH C . E 4 HOH 4 46 46 HOH HOH C . F 4 HOH 1 8 8 HOH HOH D . F 4 HOH 2 13 13 HOH HOH D . F 4 HOH 3 20 20 HOH HOH D . F 4 HOH 4 23 23 HOH HOH D . F 4 HOH 5 28 28 HOH HOH D . F 4 HOH 6 69 69 HOH HOH D . F 4 HOH 7 72 72 HOH HOH D . F 4 HOH 8 79 79 HOH HOH D . G 4 HOH 1 421 1 HOH HOH A . G 4 HOH 2 422 5 HOH HOH A . G 4 HOH 3 423 6 HOH HOH A . G 4 HOH 4 424 7 HOH HOH A . G 4 HOH 5 425 10 HOH HOH A . G 4 HOH 6 426 11 HOH HOH A . G 4 HOH 7 427 14 HOH HOH A . G 4 HOH 8 428 15 HOH HOH A . G 4 HOH 9 429 16 HOH HOH A . G 4 HOH 10 430 18 HOH HOH A . G 4 HOH 11 431 19 HOH HOH A . G 4 HOH 12 432 24 HOH HOH A . G 4 HOH 13 433 25 HOH HOH A . G 4 HOH 14 434 29 HOH HOH A . G 4 HOH 15 435 30 HOH HOH A . G 4 HOH 16 436 32 HOH HOH A . G 4 HOH 17 437 33 HOH HOH A . G 4 HOH 18 438 34 HOH HOH A . G 4 HOH 19 439 36 HOH HOH A . G 4 HOH 20 440 37 HOH HOH A . G 4 HOH 21 441 38 HOH HOH A . G 4 HOH 22 442 39 HOH HOH A . G 4 HOH 23 443 40 HOH HOH A . G 4 HOH 24 444 41 HOH HOH A . G 4 HOH 25 445 42 HOH HOH A . G 4 HOH 26 446 43 HOH HOH A . G 4 HOH 27 447 45 HOH HOH A . G 4 HOH 28 448 47 HOH HOH A . G 4 HOH 29 449 48 HOH HOH A . G 4 HOH 30 450 49 HOH HOH A . G 4 HOH 31 451 52 HOH HOH A . G 4 HOH 32 452 53 HOH HOH A . G 4 HOH 33 453 54 HOH HOH A . G 4 HOH 34 454 56 HOH HOH A . G 4 HOH 35 455 58 HOH HOH A . G 4 HOH 36 456 59 HOH HOH A . G 4 HOH 37 457 60 HOH HOH A . G 4 HOH 38 458 62 HOH HOH A . G 4 HOH 39 459 63 HOH HOH A . G 4 HOH 40 460 64 HOH HOH A . G 4 HOH 41 461 65 HOH HOH A . G 4 HOH 42 462 66 HOH HOH A . G 4 HOH 43 463 67 HOH HOH A . G 4 HOH 44 464 68 HOH HOH A . G 4 HOH 45 465 70 HOH HOH A . G 4 HOH 46 466 71 HOH HOH A . G 4 HOH 47 467 73 HOH HOH A . G 4 HOH 48 468 74 HOH HOH A . G 4 HOH 49 469 75 HOH HOH A . G 4 HOH 50 470 77 HOH HOH A . G 4 HOH 51 471 78 HOH HOH A . G 4 HOH 52 472 80 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DOC 18 C DOC 13 ? DC "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" 2 B 6OG 4 D 6OG 840 ? DG ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3860 ? 1 MORE -19 ? 1 'SSA (A^2)' 19760 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -3.8359 -17.0041 19.7775 0.2138 0.1210 0.1843 -0.0459 0.0356 0.0587 7.0180 3.0652 7.1477 -0.6527 4.5385 -0.7173 -0.2526 -0.1052 0.3418 0.4321 -0.0159 -0.6496 -0.5853 0.4254 0.2686 'X-RAY DIFFRACTION' 2 ? refined 4.7875 -17.7851 23.5169 0.3413 0.3104 0.5187 -0.0447 -0.0059 0.1243 11.2625 8.3495 7.7418 4.9502 -1.1122 -1.2728 -0.0632 -0.1702 0.3993 -0.1653 -0.3099 -1.5833 -0.3145 1.3799 0.3731 'X-RAY DIFFRACTION' 3 ? refined -20.2167 -16.6776 5.4158 0.1686 0.1142 0.1399 0.0522 0.0107 -0.0546 2.7383 2.0668 8.4216 1.2047 -0.8016 -2.1959 -0.0800 0.1492 0.1788 -0.3419 0.0996 0.3554 -0.0877 -1.0901 -0.0196 'X-RAY DIFFRACTION' 4 ? refined -13.4524 -15.2350 2.4552 0.1135 0.1397 0.0633 0.0517 0.0010 -0.0179 0.6430 1.5001 2.0994 0.2986 -1.4256 -0.3239 0.0678 -0.0013 0.0718 -0.0822 0.0385 -0.0780 -0.0842 -0.1216 -0.1063 'X-RAY DIFFRACTION' 5 ? refined -2.6980 -35.8946 3.6214 0.4056 0.2250 0.4953 0.0167 0.0520 0.0360 0.9864 0.6228 1.7755 0.3549 -1.4086 -0.6397 -0.1953 -0.1869 -0.6867 0.0369 -0.1977 -0.3542 0.7155 0.3474 0.3930 'X-RAY DIFFRACTION' 6 ? refined -5.6525 -39.8737 33.4793 0.5681 0.2552 0.4191 -0.2144 -0.0254 0.1548 9.2206 7.6930 7.7097 -0.7145 2.7450 -0.3989 0.4414 -0.4969 0.0901 0.9431 -0.0152 -0.8379 0.2096 0.1089 -0.4262 'X-RAY DIFFRACTION' 7 ? refined -11.5518 -44.4010 35.4807 0.7203 0.4326 0.4391 -0.1973 -0.0672 0.2425 3.0522 4.0924 6.0568 3.2368 2.9785 1.1097 0.6480 -0.7219 -0.2504 1.0985 -0.3821 -0.2905 0.2938 -0.7967 -0.2660 'X-RAY DIFFRACTION' 8 ? refined -4.1357 -40.8602 15.3391 0.2788 0.1955 0.3812 -0.0433 -0.0509 0.0397 2.8077 12.3206 4.9026 3.3944 -1.9222 -6.5721 0.0238 0.0254 -0.7902 -0.1553 -0.4874 -1.2581 0.5454 0.1986 0.4636 'X-RAY DIFFRACTION' 9 ? refined -8.5322 -37.5884 17.9547 0.2587 0.0901 0.2629 -0.1009 0.0077 0.0538 3.1059 4.4708 8.8167 0.3504 1.8966 4.1870 -0.3096 -0.2244 -0.3351 -0.7641 -0.2015 0.1763 -0.5950 -0.6632 0.5111 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 25 ? ? A 67 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 68 ? ? A 105 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 106 ? ? A 163 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 164 ? ? A 229 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 230 ? ? A 310 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 311 ? ? A 360 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 361 ? ? A 414 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 C 7 ? ? C 13 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 D 841 ? ? D 847 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' PLUS ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 P _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DA _pdbx_validate_symm_contact.auth_seq_id_1 7 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O3'" _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DT _pdbx_validate_symm_contact.auth_seq_id_2 847 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_445 _pdbx_validate_symm_contact.dist 1.91 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DA 7 ? ? "C1'" C DA 7 ? ? N9 C DA 7 ? ? 112.47 108.30 4.17 0.30 N 2 1 "O4'" C DG 8 ? ? "C1'" C DG 8 ? ? N9 C DG 8 ? ? 114.25 108.30 5.95 0.30 N 3 1 "O4'" C DG 9 ? ? "C1'" C DG 9 ? ? N9 C DG 9 ? ? 113.40 108.30 5.10 0.30 N 4 1 "O4'" C DA 10 ? ? "C1'" C DA 10 ? ? N9 C DA 10 ? ? 112.93 108.30 4.63 0.30 N 5 1 "O4'" C DC 11 ? ? "C4'" C DC 11 ? ? "C3'" C DC 11 ? ? 98.93 104.50 -5.57 0.40 N 6 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 111.52 108.30 3.22 0.30 N 7 1 "O4'" D DG 841 ? ? "C4'" D DG 841 ? ? "C3'" D DG 841 ? ? 101.87 104.50 -2.63 0.40 N 8 1 "C3'" D DG 841 ? ? "C2'" D DG 841 ? ? "C1'" D DG 841 ? ? 96.61 102.40 -5.79 0.80 N 9 1 "O4'" D DG 841 ? ? "C1'" D DG 841 ? ? "C2'" D DG 841 ? ? 100.04 105.90 -5.86 0.80 N 10 1 "O4'" D DG 842 ? ? "C1'" D DG 842 ? ? N9 D DG 842 ? ? 103.46 108.00 -4.54 0.70 N 11 1 "O4'" D DT 844 ? ? "C4'" D DT 844 ? ? "C3'" D DT 844 ? ? 100.34 104.50 -4.16 0.40 N 12 1 C4 D DT 844 ? ? C5 D DT 844 ? ? C7 D DT 844 ? ? 123.04 119.00 4.04 0.60 N 13 1 C6 D DT 844 ? ? C5 D DT 844 ? ? C7 D DT 844 ? ? 118.07 122.90 -4.83 0.60 N 14 1 "O4'" D DC 845 ? ? "C1'" D DC 845 ? ? N1 D DC 845 ? ? 111.22 108.30 2.92 0.30 N 15 1 C4 D DT 847 ? ? C5 D DT 847 ? ? C7 D DT 847 ? ? 122.82 119.00 3.82 0.60 N 16 1 C6 D DT 847 ? ? C5 D DT 847 ? ? C7 D DT 847 ? ? 118.62 122.90 -4.28 0.60 N 17 1 CB A VAL 379 ? ? CA A VAL 379 ? ? C A VAL 379 ? ? 96.27 111.40 -15.13 1.90 N 18 1 N A MET 380 ? ? CA A MET 380 ? ? C A MET 380 ? ? 94.66 111.00 -16.34 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 37 ? ? 32.85 47.46 2 1 ASP A 52 ? ? 47.59 14.43 3 1 LYS A 60 ? ? 53.89 -139.63 4 1 PRO A 89 ? ? -86.83 46.85 5 1 GLN A 90 ? ? -143.16 -22.45 6 1 LEU A 91 ? ? -37.11 118.74 7 1 PHE A 116 ? ? -64.19 -70.38 8 1 HIS A 235 ? ? -171.72 139.36 9 1 LYS A 310 ? ? -177.48 148.39 10 1 GLU A 314 ? ? 47.12 23.09 11 1 ILE A 369 ? ? -98.10 39.38 12 1 GLN A 370 ? ? -108.85 68.87 13 1 VAL A 379 ? ? 75.92 -12.34 14 1 ASN A 393 ? ? -66.82 4.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 53 ? CG ? C LYS 53 CG 2 1 Y 1 A LYS 53 ? CD ? C LYS 53 CD 3 1 Y 1 A LYS 53 ? CE ? C LYS 53 CE 4 1 Y 1 A LYS 53 ? NZ ? C LYS 53 NZ 5 1 Y 1 A SER 351 ? OG ? C SER 351 OG 6 1 Y 1 A HIS 367 ? CG ? C HIS 367 CG 7 1 Y 1 A HIS 367 ? ND1 ? C HIS 367 ND1 8 1 Y 1 A HIS 367 ? CD2 ? C HIS 367 CD2 9 1 Y 1 A HIS 367 ? CE1 ? C HIS 367 CE1 10 1 Y 1 A HIS 367 ? NE2 ? C HIS 367 NE2 11 1 Y 1 A ILE 386 ? CG1 ? C ILE 386 CG1 12 1 Y 1 A ILE 386 ? CG2 ? C ILE 386 CG2 13 1 Y 1 A ILE 386 ? CD1 ? C ILE 386 CD1 14 1 Y 1 A LYS 389 ? CG ? C LYS 389 CG 15 1 Y 1 A LYS 389 ? CD ? C LYS 389 CD 16 1 Y 1 A LYS 389 ? CE ? C LYS 389 CE 17 1 Y 1 A LYS 389 ? NZ ? C LYS 389 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DT -4 ? A DT 1 2 1 Y 1 C DC -3 ? A DC 2 3 1 Y 1 C DT -2 ? A DT 3 4 1 Y 1 C 6OG -1 ? A 6OG 4 5 1 Y 1 C DG 0 ? A DG 5 6 1 Y 1 C DG 1 ? A DG 6 7 1 Y 1 C DG 2 ? A DG 7 8 1 Y 1 C DT 3 ? A DT 8 9 1 Y 1 C DC 4 ? A DC 9 10 1 Y 1 C DC 5 ? A DC 10 11 1 Y 1 C DT 6 ? A DT 11 12 1 Y 1 D DT 837 ? B DT 1 13 1 Y 1 D DC 838 ? B DC 2 14 1 Y 1 D DT 839 ? B DT 3 15 1 Y 1 D DA 848 ? B DA 12 16 1 Y 1 D DG 849 ? B DG 13 17 1 Y 1 D DG 850 ? B DG 14 18 1 Y 1 D DA 851 ? B DA 15 19 1 Y 1 D DC 852 ? B DC 16 20 1 Y 1 D DC 853 ? B DC 17 21 1 Y 1 D DOC 854 ? B DOC 18 22 1 Y 1 A MET 1 ? C MET 1 23 1 Y 1 A GLU 2 ? C GLU 2 24 1 Y 1 A LEU 3 ? C LEU 3 25 1 Y 1 A ALA 4 ? C ALA 4 26 1 Y 1 A ASP 5 ? C ASP 5 27 1 Y 1 A VAL 6 ? C VAL 6 28 1 Y 1 A GLY 7 ? C GLY 7 29 1 Y 1 A ALA 8 ? C ALA 8 30 1 Y 1 A ALA 9 ? C ALA 9 31 1 Y 1 A ALA 10 ? C ALA 10 32 1 Y 1 A SER 11 ? C SER 11 33 1 Y 1 A SER 12 ? C SER 12 34 1 Y 1 A GLN 13 ? C GLN 13 35 1 Y 1 A GLY 14 ? C GLY 14 36 1 Y 1 A VAL 15 ? C VAL 15 37 1 Y 1 A HIS 16 ? C HIS 16 38 1 Y 1 A ASP 17 ? C ASP 17 39 1 Y 1 A GLN 18 ? C GLN 18 40 1 Y 1 A VAL 19 ? C VAL 19 41 1 Y 1 A LEU 20 ? C LEU 20 42 1 Y 1 A PRO 21 ? C PRO 21 43 1 Y 1 A THR 22 ? C THR 22 44 1 Y 1 A PRO 23 ? C PRO 23 45 1 Y 1 A ASN 24 ? C ASN 24 46 1 Y 1 A ALA 25 ? C ALA 25 47 1 Y 1 A GLU 352 ? C GLU 352 48 1 Y 1 A LYS 353 ? C LYS 353 49 1 Y 1 A HIS 354 ? C HIS 354 50 1 Y 1 A TYR 355 ? C TYR 355 51 1 Y 1 A LEU 372 ? C LEU 372 52 1 Y 1 A GLY 373 ? C GLY 373 53 1 Y 1 A THR 374 ? C THR 374 54 1 Y 1 A GLY 375 ? C GLY 375 55 1 Y 1 A ASN 376 ? C ASN 376 56 1 Y 1 A TYR 377 ? C TYR 377 57 1 Y 1 A VAL 395 ? C VAL 395 58 1 Y 1 A ASN 396 ? C ASN 396 59 1 Y 1 A VAL 397 ? C VAL 397 60 1 Y 1 A LYS 398 ? C LYS 398 61 1 Y 1 A MET 399 ? C MET 399 62 1 Y 1 A PRO 400 ? C PRO 400 63 1 Y 1 A PHE 401 ? C PHE 401 64 1 Y 1 A HIS 402 ? C HIS 402 65 1 Y 1 A LEU 403 ? C LEU 403 66 1 Y 1 A ALA 415 ? C ALA 415 67 1 Y 1 A LEU 416 ? C LEU 416 68 1 Y 1 A ASN 417 ? C ASN 417 69 1 Y 1 A THR 418 ? C THR 418 70 1 Y 1 A ALA 419 ? C ALA 419 71 1 Y 1 A LYS 420 ? C LYS 420 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6OG P P N N 1 6OG OP1 O N N 2 6OG OP2 O N N 3 6OG "O5'" O N N 4 6OG N9 N Y N 5 6OG C4 C Y N 6 6OG N3 N Y N 7 6OG C2 C Y N 8 6OG N2 N N N 9 6OG N1 N Y N 10 6OG C6 C Y N 11 6OG O6 O N N 12 6OG C5 C Y N 13 6OG N7 N Y N 14 6OG C8 C Y N 15 6OG "C2'" C N N 16 6OG "C5'" C N N 17 6OG "C4'" C N R 18 6OG "O4'" O N N 19 6OG "C1'" C N R 20 6OG "C3'" C N S 21 6OG "O3'" O N N 22 6OG C C N N 23 6OG HOP2 H N N 24 6OG HN21 H N N 25 6OG HN22 H N N 26 6OG H8 H N N 27 6OG "H2'" H N N 28 6OG "H2''" H N N 29 6OG "H5'" H N N 30 6OG "H5''" H N N 31 6OG "H4'" H N N 32 6OG "H1'" H N N 33 6OG "H3'" H N N 34 6OG "HO3'" H N N 35 6OG H1 H N N 36 6OG H2 H N N 37 6OG H3 H N N 38 6OG OP3 O N N 39 6OG HOP3 H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DCP N1 N N N 198 DCP C2 C N N 199 DCP N3 N N N 200 DCP C4 C N N 201 DCP C5 C N N 202 DCP C6 C N N 203 DCP O2 O N N 204 DCP N4 N N N 205 DCP "C1'" C N R 206 DCP "C2'" C N N 207 DCP "C3'" C N S 208 DCP "C4'" C N R 209 DCP "O4'" O N N 210 DCP "O3'" O N N 211 DCP "C5'" C N N 212 DCP "O5'" O N N 213 DCP PA P N R 214 DCP O1A O N N 215 DCP O2A O N N 216 DCP O3A O N N 217 DCP PB P N S 218 DCP O1B O N N 219 DCP O2B O N N 220 DCP O3B O N N 221 DCP PG P N N 222 DCP O1G O N N 223 DCP O2G O N N 224 DCP O3G O N N 225 DCP H5 H N N 226 DCP H6 H N N 227 DCP HN41 H N N 228 DCP HN42 H N N 229 DCP "H1'" H N N 230 DCP "H2'1" H N N 231 DCP "H2'2" H N N 232 DCP "H3'" H N N 233 DCP "H4'" H N N 234 DCP "HO3'" H N N 235 DCP "H5'1" H N N 236 DCP "H5'2" H N N 237 DCP HOA2 H N N 238 DCP HOB2 H N N 239 DCP HOG2 H N N 240 DCP HOG3 H N N 241 DG OP3 O N N 242 DG P P N N 243 DG OP1 O N N 244 DG OP2 O N N 245 DG "O5'" O N N 246 DG "C5'" C N N 247 DG "C4'" C N R 248 DG "O4'" O N N 249 DG "C3'" C N S 250 DG "O3'" O N N 251 DG "C2'" C N N 252 DG "C1'" C N R 253 DG N9 N Y N 254 DG C8 C Y N 255 DG N7 N Y N 256 DG C5 C Y N 257 DG C6 C N N 258 DG O6 O N N 259 DG N1 N N N 260 DG C2 C N N 261 DG N2 N N N 262 DG N3 N N N 263 DG C4 C Y N 264 DG HOP3 H N N 265 DG HOP2 H N N 266 DG "H5'" H N N 267 DG "H5''" H N N 268 DG "H4'" H N N 269 DG "H3'" H N N 270 DG "HO3'" H N N 271 DG "H2'" H N N 272 DG "H2''" H N N 273 DG "H1'" H N N 274 DG H8 H N N 275 DG H1 H N N 276 DG H21 H N N 277 DG H22 H N N 278 DOC N1 N N N 279 DOC C2 C N N 280 DOC N3 N N N 281 DOC C4 C N N 282 DOC C5 C N N 283 DOC C6 C N N 284 DOC O2 O N N 285 DOC N4 N N N 286 DOC "C1'" C N R 287 DOC "C2'" C N N 288 DOC "C3'" C N N 289 DOC "C4'" C N S 290 DOC "O4'" O N N 291 DOC "C5'" C N N 292 DOC "O5'" O N N 293 DOC P P N N 294 DOC OP1 O N N 295 DOC OP2 O N N 296 DOC OP3 O N N 297 DOC H5 H N N 298 DOC H6 H N N 299 DOC HN41 H N N 300 DOC HN42 H N N 301 DOC "H1'" H N N 302 DOC "H2'" H N N 303 DOC "H2''" H N N 304 DOC "H3'1" H N N 305 DOC "H3'2" H N N 306 DOC "H4'" H N N 307 DOC "H5'" H N N 308 DOC "H5''" H N N 309 DOC HOP2 H N N 310 DOC HOP3 H N N 311 DT OP3 O N N 312 DT P P N N 313 DT OP1 O N N 314 DT OP2 O N N 315 DT "O5'" O N N 316 DT "C5'" C N N 317 DT "C4'" C N R 318 DT "O4'" O N N 319 DT "C3'" C N S 320 DT "O3'" O N N 321 DT "C2'" C N N 322 DT "C1'" C N R 323 DT N1 N N N 324 DT C2 C N N 325 DT O2 O N N 326 DT N3 N N N 327 DT C4 C N N 328 DT O4 O N N 329 DT C5 C N N 330 DT C7 C N N 331 DT C6 C N N 332 DT HOP3 H N N 333 DT HOP2 H N N 334 DT "H5'" H N N 335 DT "H5''" H N N 336 DT "H4'" H N N 337 DT "H3'" H N N 338 DT "HO3'" H N N 339 DT "H2'" H N N 340 DT "H2''" H N N 341 DT "H1'" H N N 342 DT H3 H N N 343 DT H71 H N N 344 DT H72 H N N 345 DT H73 H N N 346 DT H6 H N N 347 GLN N N N N 348 GLN CA C N S 349 GLN C C N N 350 GLN O O N N 351 GLN CB C N N 352 GLN CG C N N 353 GLN CD C N N 354 GLN OE1 O N N 355 GLN NE2 N N N 356 GLN OXT O N N 357 GLN H H N N 358 GLN H2 H N N 359 GLN HA H N N 360 GLN HB2 H N N 361 GLN HB3 H N N 362 GLN HG2 H N N 363 GLN HG3 H N N 364 GLN HE21 H N N 365 GLN HE22 H N N 366 GLN HXT H N N 367 GLU N N N N 368 GLU CA C N S 369 GLU C C N N 370 GLU O O N N 371 GLU CB C N N 372 GLU CG C N N 373 GLU CD C N N 374 GLU OE1 O N N 375 GLU OE2 O N N 376 GLU OXT O N N 377 GLU H H N N 378 GLU H2 H N N 379 GLU HA H N N 380 GLU HB2 H N N 381 GLU HB3 H N N 382 GLU HG2 H N N 383 GLU HG3 H N N 384 GLU HE2 H N N 385 GLU HXT H N N 386 GLY N N N N 387 GLY CA C N N 388 GLY C C N N 389 GLY O O N N 390 GLY OXT O N N 391 GLY H H N N 392 GLY H2 H N N 393 GLY HA2 H N N 394 GLY HA3 H N N 395 GLY HXT H N N 396 HIS N N N N 397 HIS CA C N S 398 HIS C C N N 399 HIS O O N N 400 HIS CB C N N 401 HIS CG C Y N 402 HIS ND1 N Y N 403 HIS CD2 C Y N 404 HIS CE1 C Y N 405 HIS NE2 N Y N 406 HIS OXT O N N 407 HIS H H N N 408 HIS H2 H N N 409 HIS HA H N N 410 HIS HB2 H N N 411 HIS HB3 H N N 412 HIS HD1 H N N 413 HIS HD2 H N N 414 HIS HE1 H N N 415 HIS HE2 H N N 416 HIS HXT H N N 417 HOH O O N N 418 HOH H1 H N N 419 HOH H2 H N N 420 ILE N N N N 421 ILE CA C N S 422 ILE C C N N 423 ILE O O N N 424 ILE CB C N S 425 ILE CG1 C N N 426 ILE CG2 C N N 427 ILE CD1 C N N 428 ILE OXT O N N 429 ILE H H N N 430 ILE H2 H N N 431 ILE HA H N N 432 ILE HB H N N 433 ILE HG12 H N N 434 ILE HG13 H N N 435 ILE HG21 H N N 436 ILE HG22 H N N 437 ILE HG23 H N N 438 ILE HD11 H N N 439 ILE HD12 H N N 440 ILE HD13 H N N 441 ILE HXT H N N 442 LEU N N N N 443 LEU CA C N S 444 LEU C C N N 445 LEU O O N N 446 LEU CB C N N 447 LEU CG C N N 448 LEU CD1 C N N 449 LEU CD2 C N N 450 LEU OXT O N N 451 LEU H H N N 452 LEU H2 H N N 453 LEU HA H N N 454 LEU HB2 H N N 455 LEU HB3 H N N 456 LEU HG H N N 457 LEU HD11 H N N 458 LEU HD12 H N N 459 LEU HD13 H N N 460 LEU HD21 H N N 461 LEU HD22 H N N 462 LEU HD23 H N N 463 LEU HXT H N N 464 LYS N N N N 465 LYS CA C N S 466 LYS C C N N 467 LYS O O N N 468 LYS CB C N N 469 LYS CG C N N 470 LYS CD C N N 471 LYS CE C N N 472 LYS NZ N N N 473 LYS OXT O N N 474 LYS H H N N 475 LYS H2 H N N 476 LYS HA H N N 477 LYS HB2 H N N 478 LYS HB3 H N N 479 LYS HG2 H N N 480 LYS HG3 H N N 481 LYS HD2 H N N 482 LYS HD3 H N N 483 LYS HE2 H N N 484 LYS HE3 H N N 485 LYS HZ1 H N N 486 LYS HZ2 H N N 487 LYS HZ3 H N N 488 LYS HXT H N N 489 MET N N N N 490 MET CA C N S 491 MET C C N N 492 MET O O N N 493 MET CB C N N 494 MET CG C N N 495 MET SD S N N 496 MET CE C N N 497 MET OXT O N N 498 MET H H N N 499 MET H2 H N N 500 MET HA H N N 501 MET HB2 H N N 502 MET HB3 H N N 503 MET HG2 H N N 504 MET HG3 H N N 505 MET HE1 H N N 506 MET HE2 H N N 507 MET HE3 H N N 508 MET HXT H N N 509 PHE N N N N 510 PHE CA C N S 511 PHE C C N N 512 PHE O O N N 513 PHE CB C N N 514 PHE CG C Y N 515 PHE CD1 C Y N 516 PHE CD2 C Y N 517 PHE CE1 C Y N 518 PHE CE2 C Y N 519 PHE CZ C Y N 520 PHE OXT O N N 521 PHE H H N N 522 PHE H2 H N N 523 PHE HA H N N 524 PHE HB2 H N N 525 PHE HB3 H N N 526 PHE HD1 H N N 527 PHE HD2 H N N 528 PHE HE1 H N N 529 PHE HE2 H N N 530 PHE HZ H N N 531 PHE HXT H N N 532 PRO N N N N 533 PRO CA C N S 534 PRO C C N N 535 PRO O O N N 536 PRO CB C N N 537 PRO CG C N N 538 PRO CD C N N 539 PRO OXT O N N 540 PRO H H N N 541 PRO HA H N N 542 PRO HB2 H N N 543 PRO HB3 H N N 544 PRO HG2 H N N 545 PRO HG3 H N N 546 PRO HD2 H N N 547 PRO HD3 H N N 548 PRO HXT H N N 549 SER N N N N 550 SER CA C N S 551 SER C C N N 552 SER O O N N 553 SER CB C N N 554 SER OG O N N 555 SER OXT O N N 556 SER H H N N 557 SER H2 H N N 558 SER HA H N N 559 SER HB2 H N N 560 SER HB3 H N N 561 SER HG H N N 562 SER HXT H N N 563 THR N N N N 564 THR CA C N S 565 THR C C N N 566 THR O O N N 567 THR CB C N R 568 THR OG1 O N N 569 THR CG2 C N N 570 THR OXT O N N 571 THR H H N N 572 THR H2 H N N 573 THR HA H N N 574 THR HB H N N 575 THR HG1 H N N 576 THR HG21 H N N 577 THR HG22 H N N 578 THR HG23 H N N 579 THR HXT H N N 580 TYR N N N N 581 TYR CA C N S 582 TYR C C N N 583 TYR O O N N 584 TYR CB C N N 585 TYR CG C Y N 586 TYR CD1 C Y N 587 TYR CD2 C Y N 588 TYR CE1 C Y N 589 TYR CE2 C Y N 590 TYR CZ C Y N 591 TYR OH O N N 592 TYR OXT O N N 593 TYR H H N N 594 TYR H2 H N N 595 TYR HA H N N 596 TYR HB2 H N N 597 TYR HB3 H N N 598 TYR HD1 H N N 599 TYR HD2 H N N 600 TYR HE1 H N N 601 TYR HE2 H N N 602 TYR HH H N N 603 TYR HXT H N N 604 VAL N N N N 605 VAL CA C N S 606 VAL C C N N 607 VAL O O N N 608 VAL CB C N N 609 VAL CG1 C N N 610 VAL CG2 C N N 611 VAL OXT O N N 612 VAL H H N N 613 VAL H2 H N N 614 VAL HA H N N 615 VAL HB H N N 616 VAL HG11 H N N 617 VAL HG12 H N N 618 VAL HG13 H N N 619 VAL HG21 H N N 620 VAL HG22 H N N 621 VAL HG23 H N N 622 VAL HXT H N N 623 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6OG P OP1 doub N N 1 6OG P OP2 sing N N 2 6OG P "O5'" sing N N 3 6OG OP2 HOP2 sing N N 4 6OG "O5'" "C5'" sing N N 5 6OG N9 C4 sing Y N 6 6OG N9 C8 sing Y N 7 6OG N9 "C1'" sing N N 8 6OG C4 N3 sing Y N 9 6OG C4 C5 doub Y N 10 6OG N3 C2 doub Y N 11 6OG C2 N2 sing N N 12 6OG C2 N1 sing Y N 13 6OG N2 HN21 sing N N 14 6OG N2 HN22 sing N N 15 6OG N1 C6 doub Y N 16 6OG C6 O6 sing N N 17 6OG C6 C5 sing Y N 18 6OG O6 C sing N N 19 6OG C5 N7 sing Y N 20 6OG N7 C8 doub Y N 21 6OG C8 H8 sing N N 22 6OG "C2'" "C1'" sing N N 23 6OG "C2'" "C3'" sing N N 24 6OG "C2'" "H2'" sing N N 25 6OG "C2'" "H2''" sing N N 26 6OG "C5'" "C4'" sing N N 27 6OG "C5'" "H5'" sing N N 28 6OG "C5'" "H5''" sing N N 29 6OG "C4'" "O4'" sing N N 30 6OG "C4'" "C3'" sing N N 31 6OG "C4'" "H4'" sing N N 32 6OG "O4'" "C1'" sing N N 33 6OG "C1'" "H1'" sing N N 34 6OG "C3'" "O3'" sing N N 35 6OG "C3'" "H3'" sing N N 36 6OG "O3'" "HO3'" sing N N 37 6OG C H1 sing N N 38 6OG C H2 sing N N 39 6OG C H3 sing N N 40 6OG P OP3 sing N N 41 6OG OP3 HOP3 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DCP N1 C2 sing N N 198 DCP N1 C6 sing N N 199 DCP N1 "C1'" sing N N 200 DCP C2 N3 sing N N 201 DCP C2 O2 doub N N 202 DCP N3 C4 doub N N 203 DCP C4 C5 sing N N 204 DCP C4 N4 sing N N 205 DCP C5 C6 doub N N 206 DCP C5 H5 sing N N 207 DCP C6 H6 sing N N 208 DCP N4 HN41 sing N N 209 DCP N4 HN42 sing N N 210 DCP "C1'" "C2'" sing N N 211 DCP "C1'" "O4'" sing N N 212 DCP "C1'" "H1'" sing N N 213 DCP "C2'" "C3'" sing N N 214 DCP "C2'" "H2'1" sing N N 215 DCP "C2'" "H2'2" sing N N 216 DCP "C3'" "C4'" sing N N 217 DCP "C3'" "O3'" sing N N 218 DCP "C3'" "H3'" sing N N 219 DCP "C4'" "O4'" sing N N 220 DCP "C4'" "C5'" sing N N 221 DCP "C4'" "H4'" sing N N 222 DCP "O3'" "HO3'" sing N N 223 DCP "C5'" "O5'" sing N N 224 DCP "C5'" "H5'1" sing N N 225 DCP "C5'" "H5'2" sing N N 226 DCP "O5'" PA sing N N 227 DCP PA O1A doub N N 228 DCP PA O2A sing N N 229 DCP PA O3A sing N N 230 DCP O2A HOA2 sing N N 231 DCP O3A PB sing N N 232 DCP PB O1B doub N N 233 DCP PB O2B sing N N 234 DCP PB O3B sing N N 235 DCP O2B HOB2 sing N N 236 DCP O3B PG sing N N 237 DCP PG O1G doub N N 238 DCP PG O2G sing N N 239 DCP PG O3G sing N N 240 DCP O2G HOG2 sing N N 241 DCP O3G HOG3 sing N N 242 DG OP3 P sing N N 243 DG OP3 HOP3 sing N N 244 DG P OP1 doub N N 245 DG P OP2 sing N N 246 DG P "O5'" sing N N 247 DG OP2 HOP2 sing N N 248 DG "O5'" "C5'" sing N N 249 DG "C5'" "C4'" sing N N 250 DG "C5'" "H5'" sing N N 251 DG "C5'" "H5''" sing N N 252 DG "C4'" "O4'" sing N N 253 DG "C4'" "C3'" sing N N 254 DG "C4'" "H4'" sing N N 255 DG "O4'" "C1'" sing N N 256 DG "C3'" "O3'" sing N N 257 DG "C3'" "C2'" sing N N 258 DG "C3'" "H3'" sing N N 259 DG "O3'" "HO3'" sing N N 260 DG "C2'" "C1'" sing N N 261 DG "C2'" "H2'" sing N N 262 DG "C2'" "H2''" sing N N 263 DG "C1'" N9 sing N N 264 DG "C1'" "H1'" sing N N 265 DG N9 C8 sing Y N 266 DG N9 C4 sing Y N 267 DG C8 N7 doub Y N 268 DG C8 H8 sing N N 269 DG N7 C5 sing Y N 270 DG C5 C6 sing N N 271 DG C5 C4 doub Y N 272 DG C6 O6 doub N N 273 DG C6 N1 sing N N 274 DG N1 C2 sing N N 275 DG N1 H1 sing N N 276 DG C2 N2 sing N N 277 DG C2 N3 doub N N 278 DG N2 H21 sing N N 279 DG N2 H22 sing N N 280 DG N3 C4 sing N N 281 DOC N1 C2 sing N N 282 DOC N1 C6 sing N N 283 DOC N1 "C1'" sing N N 284 DOC C2 N3 sing N N 285 DOC C2 O2 doub N N 286 DOC N3 C4 doub N N 287 DOC C4 C5 sing N N 288 DOC C4 N4 sing N N 289 DOC C5 C6 doub N N 290 DOC C5 H5 sing N N 291 DOC C6 H6 sing N N 292 DOC N4 HN41 sing N N 293 DOC N4 HN42 sing N N 294 DOC "C1'" "C2'" sing N N 295 DOC "C1'" "O4'" sing N N 296 DOC "C1'" "H1'" sing N N 297 DOC "C2'" "C3'" sing N N 298 DOC "C2'" "H2'" sing N N 299 DOC "C2'" "H2''" sing N N 300 DOC "C3'" "C4'" sing N N 301 DOC "C3'" "H3'1" sing N N 302 DOC "C3'" "H3'2" sing N N 303 DOC "C4'" "O4'" sing N N 304 DOC "C4'" "C5'" sing N N 305 DOC "C4'" "H4'" sing N N 306 DOC "C5'" "O5'" sing N N 307 DOC "C5'" "H5'" sing N N 308 DOC "C5'" "H5''" sing N N 309 DOC "O5'" P sing N N 310 DOC P OP1 doub N N 311 DOC P OP2 sing N N 312 DOC P OP3 sing N N 313 DOC OP2 HOP2 sing N N 314 DOC OP3 HOP3 sing N N 315 DT OP3 P sing N N 316 DT OP3 HOP3 sing N N 317 DT P OP1 doub N N 318 DT P OP2 sing N N 319 DT P "O5'" sing N N 320 DT OP2 HOP2 sing N N 321 DT "O5'" "C5'" sing N N 322 DT "C5'" "C4'" sing N N 323 DT "C5'" "H5'" sing N N 324 DT "C5'" "H5''" sing N N 325 DT "C4'" "O4'" sing N N 326 DT "C4'" "C3'" sing N N 327 DT "C4'" "H4'" sing N N 328 DT "O4'" "C1'" sing N N 329 DT "C3'" "O3'" sing N N 330 DT "C3'" "C2'" sing N N 331 DT "C3'" "H3'" sing N N 332 DT "O3'" "HO3'" sing N N 333 DT "C2'" "C1'" sing N N 334 DT "C2'" "H2'" sing N N 335 DT "C2'" "H2''" sing N N 336 DT "C1'" N1 sing N N 337 DT "C1'" "H1'" sing N N 338 DT N1 C2 sing N N 339 DT N1 C6 sing N N 340 DT C2 O2 doub N N 341 DT C2 N3 sing N N 342 DT N3 C4 sing N N 343 DT N3 H3 sing N N 344 DT C4 O4 doub N N 345 DT C4 C5 sing N N 346 DT C5 C7 sing N N 347 DT C5 C6 doub N N 348 DT C7 H71 sing N N 349 DT C7 H72 sing N N 350 DT C7 H73 sing N N 351 DT C6 H6 sing N N 352 GLN N CA sing N N 353 GLN N H sing N N 354 GLN N H2 sing N N 355 GLN CA C sing N N 356 GLN CA CB sing N N 357 GLN CA HA sing N N 358 GLN C O doub N N 359 GLN C OXT sing N N 360 GLN CB CG sing N N 361 GLN CB HB2 sing N N 362 GLN CB HB3 sing N N 363 GLN CG CD sing N N 364 GLN CG HG2 sing N N 365 GLN CG HG3 sing N N 366 GLN CD OE1 doub N N 367 GLN CD NE2 sing N N 368 GLN NE2 HE21 sing N N 369 GLN NE2 HE22 sing N N 370 GLN OXT HXT sing N N 371 GLU N CA sing N N 372 GLU N H sing N N 373 GLU N H2 sing N N 374 GLU CA C sing N N 375 GLU CA CB sing N N 376 GLU CA HA sing N N 377 GLU C O doub N N 378 GLU C OXT sing N N 379 GLU CB CG sing N N 380 GLU CB HB2 sing N N 381 GLU CB HB3 sing N N 382 GLU CG CD sing N N 383 GLU CG HG2 sing N N 384 GLU CG HG3 sing N N 385 GLU CD OE1 doub N N 386 GLU CD OE2 sing N N 387 GLU OE2 HE2 sing N N 388 GLU OXT HXT sing N N 389 GLY N CA sing N N 390 GLY N H sing N N 391 GLY N H2 sing N N 392 GLY CA C sing N N 393 GLY CA HA2 sing N N 394 GLY CA HA3 sing N N 395 GLY C O doub N N 396 GLY C OXT sing N N 397 GLY OXT HXT sing N N 398 HIS N CA sing N N 399 HIS N H sing N N 400 HIS N H2 sing N N 401 HIS CA C sing N N 402 HIS CA CB sing N N 403 HIS CA HA sing N N 404 HIS C O doub N N 405 HIS C OXT sing N N 406 HIS CB CG sing N N 407 HIS CB HB2 sing N N 408 HIS CB HB3 sing N N 409 HIS CG ND1 sing Y N 410 HIS CG CD2 doub Y N 411 HIS ND1 CE1 doub Y N 412 HIS ND1 HD1 sing N N 413 HIS CD2 NE2 sing Y N 414 HIS CD2 HD2 sing N N 415 HIS CE1 NE2 sing Y N 416 HIS CE1 HE1 sing N N 417 HIS NE2 HE2 sing N N 418 HIS OXT HXT sing N N 419 HOH O H1 sing N N 420 HOH O H2 sing N N 421 ILE N CA sing N N 422 ILE N H sing N N 423 ILE N H2 sing N N 424 ILE CA C sing N N 425 ILE CA CB sing N N 426 ILE CA HA sing N N 427 ILE C O doub N N 428 ILE C OXT sing N N 429 ILE CB CG1 sing N N 430 ILE CB CG2 sing N N 431 ILE CB HB sing N N 432 ILE CG1 CD1 sing N N 433 ILE CG1 HG12 sing N N 434 ILE CG1 HG13 sing N N 435 ILE CG2 HG21 sing N N 436 ILE CG2 HG22 sing N N 437 ILE CG2 HG23 sing N N 438 ILE CD1 HD11 sing N N 439 ILE CD1 HD12 sing N N 440 ILE CD1 HD13 sing N N 441 ILE OXT HXT sing N N 442 LEU N CA sing N N 443 LEU N H sing N N 444 LEU N H2 sing N N 445 LEU CA C sing N N 446 LEU CA CB sing N N 447 LEU CA HA sing N N 448 LEU C O doub N N 449 LEU C OXT sing N N 450 LEU CB CG sing N N 451 LEU CB HB2 sing N N 452 LEU CB HB3 sing N N 453 LEU CG CD1 sing N N 454 LEU CG CD2 sing N N 455 LEU CG HG sing N N 456 LEU CD1 HD11 sing N N 457 LEU CD1 HD12 sing N N 458 LEU CD1 HD13 sing N N 459 LEU CD2 HD21 sing N N 460 LEU CD2 HD22 sing N N 461 LEU CD2 HD23 sing N N 462 LEU OXT HXT sing N N 463 LYS N CA sing N N 464 LYS N H sing N N 465 LYS N H2 sing N N 466 LYS CA C sing N N 467 LYS CA CB sing N N 468 LYS CA HA sing N N 469 LYS C O doub N N 470 LYS C OXT sing N N 471 LYS CB CG sing N N 472 LYS CB HB2 sing N N 473 LYS CB HB3 sing N N 474 LYS CG CD sing N N 475 LYS CG HG2 sing N N 476 LYS CG HG3 sing N N 477 LYS CD CE sing N N 478 LYS CD HD2 sing N N 479 LYS CD HD3 sing N N 480 LYS CE NZ sing N N 481 LYS CE HE2 sing N N 482 LYS CE HE3 sing N N 483 LYS NZ HZ1 sing N N 484 LYS NZ HZ2 sing N N 485 LYS NZ HZ3 sing N N 486 LYS OXT HXT sing N N 487 MET N CA sing N N 488 MET N H sing N N 489 MET N H2 sing N N 490 MET CA C sing N N 491 MET CA CB sing N N 492 MET CA HA sing N N 493 MET C O doub N N 494 MET C OXT sing N N 495 MET CB CG sing N N 496 MET CB HB2 sing N N 497 MET CB HB3 sing N N 498 MET CG SD sing N N 499 MET CG HG2 sing N N 500 MET CG HG3 sing N N 501 MET SD CE sing N N 502 MET CE HE1 sing N N 503 MET CE HE2 sing N N 504 MET CE HE3 sing N N 505 MET OXT HXT sing N N 506 PHE N CA sing N N 507 PHE N H sing N N 508 PHE N H2 sing N N 509 PHE CA C sing N N 510 PHE CA CB sing N N 511 PHE CA HA sing N N 512 PHE C O doub N N 513 PHE C OXT sing N N 514 PHE CB CG sing N N 515 PHE CB HB2 sing N N 516 PHE CB HB3 sing N N 517 PHE CG CD1 doub Y N 518 PHE CG CD2 sing Y N 519 PHE CD1 CE1 sing Y N 520 PHE CD1 HD1 sing N N 521 PHE CD2 CE2 doub Y N 522 PHE CD2 HD2 sing N N 523 PHE CE1 CZ doub Y N 524 PHE CE1 HE1 sing N N 525 PHE CE2 CZ sing Y N 526 PHE CE2 HE2 sing N N 527 PHE CZ HZ sing N N 528 PHE OXT HXT sing N N 529 PRO N CA sing N N 530 PRO N CD sing N N 531 PRO N H sing N N 532 PRO CA C sing N N 533 PRO CA CB sing N N 534 PRO CA HA sing N N 535 PRO C O doub N N 536 PRO C OXT sing N N 537 PRO CB CG sing N N 538 PRO CB HB2 sing N N 539 PRO CB HB3 sing N N 540 PRO CG CD sing N N 541 PRO CG HG2 sing N N 542 PRO CG HG3 sing N N 543 PRO CD HD2 sing N N 544 PRO CD HD3 sing N N 545 PRO OXT HXT sing N N 546 SER N CA sing N N 547 SER N H sing N N 548 SER N H2 sing N N 549 SER CA C sing N N 550 SER CA CB sing N N 551 SER CA HA sing N N 552 SER C O doub N N 553 SER C OXT sing N N 554 SER CB OG sing N N 555 SER CB HB2 sing N N 556 SER CB HB3 sing N N 557 SER OG HG sing N N 558 SER OXT HXT sing N N 559 THR N CA sing N N 560 THR N H sing N N 561 THR N H2 sing N N 562 THR CA C sing N N 563 THR CA CB sing N N 564 THR CA HA sing N N 565 THR C O doub N N 566 THR C OXT sing N N 567 THR CB OG1 sing N N 568 THR CB CG2 sing N N 569 THR CB HB sing N N 570 THR OG1 HG1 sing N N 571 THR CG2 HG21 sing N N 572 THR CG2 HG22 sing N N 573 THR CG2 HG23 sing N N 574 THR OXT HXT sing N N 575 TYR N CA sing N N 576 TYR N H sing N N 577 TYR N H2 sing N N 578 TYR CA C sing N N 579 TYR CA CB sing N N 580 TYR CA HA sing N N 581 TYR C O doub N N 582 TYR C OXT sing N N 583 TYR CB CG sing N N 584 TYR CB HB2 sing N N 585 TYR CB HB3 sing N N 586 TYR CG CD1 doub Y N 587 TYR CG CD2 sing Y N 588 TYR CD1 CE1 sing Y N 589 TYR CD1 HD1 sing N N 590 TYR CD2 CE2 doub Y N 591 TYR CD2 HD2 sing N N 592 TYR CE1 CZ doub Y N 593 TYR CE1 HE1 sing N N 594 TYR CE2 CZ sing Y N 595 TYR CE2 HE2 sing N N 596 TYR CZ OH sing N N 597 TYR OH HH sing N N 598 TYR OXT HXT sing N N 599 VAL N CA sing N N 600 VAL N H sing N N 601 VAL N H2 sing N N 602 VAL CA C sing N N 603 VAL CA CB sing N N 604 VAL CA HA sing N N 605 VAL C O doub N N 606 VAL C OXT sing N N 607 VAL CB CG1 sing N N 608 VAL CB CG2 sing N N 609 VAL CB HB sing N N 610 VAL CG1 HG11 sing N N 611 VAL CG1 HG12 sing N N 612 VAL CG1 HG13 sing N N 613 VAL CG2 HG21 sing N N 614 VAL CG2 HG22 sing N N 615 VAL CG2 HG23 sing N N 616 VAL OXT HXT sing N N 617 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3NGD 'double helix' 3NGD 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 12 1_555 B DT 11 1_555 0.032 -0.294 0.328 5.902 -9.636 5.234 1 C_DA7:DT847_D C 7 ? D 847 ? 20 1 1 A DG 13 1_555 B DC 10 1_555 -0.579 -0.231 0.403 11.331 -5.792 -2.456 2 C_DG8:DC846_D C 8 ? D 846 ? 19 1 1 A DG 14 1_555 B DC 9 1_555 0.212 0.105 -0.028 -1.786 -7.388 2.153 3 C_DG9:DC845_D C 9 ? D 845 ? 19 1 1 A DA 15 1_555 B DT 8 1_555 -0.143 -0.223 0.268 11.294 -12.443 -0.715 4 C_DA10:DT844_D C 10 ? D 844 ? 20 1 1 A DC 16 1_555 B DG 7 1_555 -0.043 -0.110 -0.101 13.558 -20.095 3.284 5 C_DC11:DG843_D C 11 ? D 843 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 0.097 -0.102 0.255 3.430 -11.281 -0.682 6 C_DC12:DG842_D C 12 ? D 842 ? 19 1 1 A DOC 18 1_555 B DG 5 1_555 -0.050 -0.401 -0.067 -5.094 -0.086 -2.564 7 C_DOC13:DG841_D C 13 ? D 841 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 12 1_555 B DT 11 1_555 A DG 13 1_555 B DC 10 1_555 0.409 -0.762 3.221 0.744 -2.505 26.228 -1.003 -0.699 3.288 -5.502 -1.634 26.355 1 CC_DA7DG8:DC846DT847_DD C 7 ? D 847 ? C 8 ? D 846 ? 1 A DG 13 1_555 B DC 10 1_555 A DG 14 1_555 B DC 9 1_555 0.464 -0.724 3.677 3.924 -0.625 43.617 -0.904 -0.199 3.713 -0.839 -5.268 43.789 2 CC_DG8DG9:DC845DC846_DD C 8 ? D 846 ? C 9 ? D 845 ? 1 A DG 14 1_555 B DC 9 1_555 A DA 15 1_555 B DT 8 1_555 -0.200 -0.592 3.022 -2.079 2.505 26.392 -1.891 -0.066 2.961 5.460 4.531 26.588 3 CC_DG9DA10:DT844DC845_DD C 9 ? D 845 ? C 10 ? D 844 ? 1 A DA 15 1_555 B DT 8 1_555 A DC 16 1_555 B DG 7 1_555 0.808 -1.375 3.202 2.923 4.702 33.484 -3.081 -0.934 3.044 8.093 -5.030 33.925 4 CC_DA10DC11:DG843DT844_DD C 10 ? D 844 ? C 11 ? D 843 ? 1 A DC 16 1_555 B DG 7 1_555 A DC 17 1_555 B DG 6 1_555 -0.530 -1.797 3.575 -6.238 11.784 31.944 -4.878 -0.088 2.809 20.340 10.768 34.549 5 CC_DC11DC12:DG842DG843_DD C 11 ? D 843 ? C 12 ? D 842 ? 1 A DC 17 1_555 B DG 6 1_555 A DOC 18 1_555 B DG 5 1_555 -0.648 -1.511 3.527 3.020 3.884 22.738 -5.122 2.676 3.117 9.705 -7.548 23.257 6 CC_DC12DOC13:DG841DG842_DD C 12 ? D 842 ? C 13 ? D 841 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" DCP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ALZ _pdbx_initial_refinement_model.details '2ALZ minus DNA' #