data_3NGU # _entry.id 3NGU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NGU pdb_00003ngu 10.2210/pdb3ngu/pdb RCSB RCSB059811 ? ? WWPDB D_1000059811 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-10-09 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NGU _pdbx_database_status.recvd_initial_deposition_date 2010-06-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NGR 'The same protein with unordered nucleotide-binding loop.' unspecified PDB 3NGS 'The same protein with ordered nucleotide-binding loop.' unspecified PDB 3NGT 'The same protein complexed with AMP.' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trindade, D.M.' 1 'Sousa, T.A.C.B.' 2 'Tonoli, C.C.C.' 3 'Santos, C.R.' 4 'Arni, R.K.' 5 'Ward, R.J.' 6 'Oliveira, A.H.C.' 7 'Murakami, M.T.' 8 # _citation.id primary _citation.title ;Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding. ; _citation.journal_abbrev 'Mol Biosyst' _citation.journal_volume 7 _citation.page_first 2189 _citation.page_last 2195 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-206X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21528129 _citation.pdbx_database_id_DOI 10.1039/c0mb00307g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Souza, T.A.' 1 ? primary 'Trindade, D.M.' 2 ? primary 'Tonoli, C.C.' 3 ? primary 'Santos, C.R.' 4 ? primary 'Ward, R.J.' 5 ? primary 'Arni, R.K.' 6 ? primary 'Oliveira, A.H.' 7 ? primary 'Murakami, M.T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 16660.953 2 2.7.4.6 ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 2 ? ? ? ? 3 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGK NVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVESAEREIAFWFKADEIASWTSHSVSQIYE ; _entity_poly.pdbx_seq_one_letter_code_can ;MSSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGK NVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVESAEREIAFWFKADEIASWTSHSVSQIYE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 SER n 1 4 GLU n 1 5 ARG n 1 6 THR n 1 7 PHE n 1 8 ILE n 1 9 ALA n 1 10 VAL n 1 11 LYS n 1 12 PRO n 1 13 ASP n 1 14 GLY n 1 15 VAL n 1 16 GLN n 1 17 ARG n 1 18 GLY n 1 19 LEU n 1 20 VAL n 1 21 GLY n 1 22 GLU n 1 23 ILE n 1 24 ILE n 1 25 ALA n 1 26 ARG n 1 27 PHE n 1 28 GLU n 1 29 ARG n 1 30 LYS n 1 31 GLY n 1 32 TYR n 1 33 LYS n 1 34 LEU n 1 35 VAL n 1 36 ALA n 1 37 LEU n 1 38 LYS n 1 39 ILE n 1 40 LEU n 1 41 GLN n 1 42 PRO n 1 43 THR n 1 44 THR n 1 45 GLU n 1 46 GLN n 1 47 ALA n 1 48 GLN n 1 49 GLY n 1 50 HIS n 1 51 TYR n 1 52 LYS n 1 53 ASP n 1 54 LEU n 1 55 CYS n 1 56 SER n 1 57 LYS n 1 58 PRO n 1 59 PHE n 1 60 PHE n 1 61 PRO n 1 62 ALA n 1 63 LEU n 1 64 VAL n 1 65 LYS n 1 66 TYR n 1 67 PHE n 1 68 SER n 1 69 SER n 1 70 GLY n 1 71 PRO n 1 72 ILE n 1 73 VAL n 1 74 CYS n 1 75 MET n 1 76 VAL n 1 77 TRP n 1 78 GLU n 1 79 GLY n 1 80 LYS n 1 81 ASN n 1 82 VAL n 1 83 VAL n 1 84 LYS n 1 85 SER n 1 86 GLY n 1 87 ARG n 1 88 VAL n 1 89 LEU n 1 90 LEU n 1 91 GLY n 1 92 ALA n 1 93 THR n 1 94 ASN n 1 95 PRO n 1 96 ALA n 1 97 ASP n 1 98 SER n 1 99 GLN n 1 100 PRO n 1 101 GLY n 1 102 THR n 1 103 ILE n 1 104 ARG n 1 105 GLY n 1 106 ASP n 1 107 PHE n 1 108 ALA n 1 109 VAL n 1 110 ASP n 1 111 VAL n 1 112 GLY n 1 113 ARG n 1 114 ASN n 1 115 VAL n 1 116 CYS n 1 117 HIS n 1 118 GLY n 1 119 SER n 1 120 ASP n 1 121 SER n 1 122 VAL n 1 123 GLU n 1 124 SER n 1 125 ALA n 1 126 GLU n 1 127 ARG n 1 128 GLU n 1 129 ILE n 1 130 ALA n 1 131 PHE n 1 132 TRP n 1 133 PHE n 1 134 LYS n 1 135 ALA n 1 136 ASP n 1 137 GLU n 1 138 ILE n 1 139 ALA n 1 140 SER n 1 141 TRP n 1 142 THR n 1 143 SER n 1 144 HIS n 1 145 SER n 1 146 VAL n 1 147 SER n 1 148 GLN n 1 149 ILE n 1 150 TYR n 1 151 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'L1648.07, LmjF32.2950, NDKb' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Leishmania major' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5664 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 CYS 74 74 74 CYS CYS A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 TRP 77 77 77 TRP TRP A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 CYS 116 116 116 CYS CYS A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 TRP 132 132 132 TRP TRP A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 TRP 141 141 141 TRP TRP A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 HIS 144 144 144 HIS HIS A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 GLN 148 148 148 GLN GLN A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 GLU 151 151 151 GLU GLU A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 ASP 13 13 13 ASP ASP B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 GLU 28 28 28 GLU GLU B . n B 1 29 ARG 29 29 29 ARG ARG B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 LYS 33 33 33 LYS LYS B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 LEU 37 37 37 LEU LEU B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 THR 44 44 44 THR THR B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 GLN 46 46 46 GLN GLN B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 GLN 48 48 48 GLN GLN B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 HIS 50 50 50 HIS HIS B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 LYS 52 52 52 LYS LYS B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 CYS 55 55 55 CYS CYS B . n B 1 56 SER 56 56 56 SER SER B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 PRO 58 58 58 PRO PRO B . n B 1 59 PHE 59 59 59 PHE PHE B . n B 1 60 PHE 60 60 60 PHE PHE B . n B 1 61 PRO 61 61 61 PRO PRO B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 TYR 66 66 66 TYR TYR B . n B 1 67 PHE 67 67 67 PHE PHE B . n B 1 68 SER 68 68 68 SER SER B . n B 1 69 SER 69 69 69 SER SER B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 PRO 71 71 71 PRO PRO B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 CYS 74 74 74 CYS CYS B . n B 1 75 MET 75 75 75 MET MET B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 TRP 77 77 77 TRP TRP B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 LYS 80 80 80 LYS LYS B . n B 1 81 ASN 81 81 81 ASN ASN B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 LYS 84 84 84 LYS LYS B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 GLY 91 91 91 GLY GLY B . n B 1 92 ALA 92 92 92 ALA ALA B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 ASN 94 94 94 ASN ASN B . n B 1 95 PRO 95 95 95 PRO PRO B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 ASP 97 97 97 ASP ASP B . n B 1 98 SER 98 98 98 SER SER B . n B 1 99 GLN 99 99 99 GLN GLN B . n B 1 100 PRO 100 100 100 PRO PRO B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 THR 102 102 102 THR THR B . n B 1 103 ILE 103 103 103 ILE ILE B . n B 1 104 ARG 104 104 104 ARG ARG B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 ASP 106 106 106 ASP ASP B . n B 1 107 PHE 107 107 107 PHE PHE B . n B 1 108 ALA 108 108 108 ALA ALA B . n B 1 109 VAL 109 109 109 VAL VAL B . n B 1 110 ASP 110 110 110 ASP ASP B . n B 1 111 VAL 111 111 111 VAL VAL B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 ARG 113 113 113 ARG ARG B . n B 1 114 ASN 114 114 114 ASN ASN B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 CYS 116 116 116 CYS CYS B . n B 1 117 HIS 117 117 117 HIS HIS B . n B 1 118 GLY 118 118 118 GLY GLY B . n B 1 119 SER 119 119 119 SER SER B . n B 1 120 ASP 120 120 120 ASP ASP B . n B 1 121 SER 121 121 121 SER SER B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 GLU 123 123 123 GLU GLU B . n B 1 124 SER 124 124 124 SER SER B . n B 1 125 ALA 125 125 125 ALA ALA B . n B 1 126 GLU 126 126 126 GLU GLU B . n B 1 127 ARG 127 127 127 ARG ARG B . n B 1 128 GLU 128 128 128 GLU GLU B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 ALA 130 130 130 ALA ALA B . n B 1 131 PHE 131 131 131 PHE PHE B . n B 1 132 TRP 132 132 132 TRP TRP B . n B 1 133 PHE 133 133 133 PHE PHE B . n B 1 134 LYS 134 134 134 LYS LYS B . n B 1 135 ALA 135 135 135 ALA ALA B . n B 1 136 ASP 136 136 136 ASP ASP B . n B 1 137 GLU 137 137 137 GLU GLU B . n B 1 138 ILE 138 138 138 ILE ILE B . n B 1 139 ALA 139 139 139 ALA ALA B . n B 1 140 SER 140 140 140 SER SER B . n B 1 141 TRP 141 141 141 TRP TRP B . n B 1 142 THR 142 142 142 THR THR B . n B 1 143 SER 143 143 143 SER SER B . n B 1 144 HIS 144 144 144 HIS HIS B . n B 1 145 SER 145 145 145 SER SER B . n B 1 146 VAL 146 146 146 VAL VAL B . n B 1 147 SER 147 147 147 SER SER B . n B 1 148 GLN 148 148 148 GLN GLN B . n B 1 149 ILE 149 149 149 ILE ILE B . n B 1 150 TYR 150 150 150 TYR TYR B . n B 1 151 GLU 151 151 151 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP 1 152 1 ADP ADP A . D 2 ADP 1 152 2 ADP ADP B . E 3 HOH 1 153 1 HOH HOH A . E 3 HOH 2 154 2 HOH HOH A . E 3 HOH 3 155 3 HOH HOH A . E 3 HOH 4 156 4 HOH HOH A . E 3 HOH 5 157 5 HOH HOH A . E 3 HOH 6 158 8 HOH HOH A . E 3 HOH 7 159 9 HOH HOH A . E 3 HOH 8 160 10 HOH HOH A . E 3 HOH 9 161 11 HOH HOH A . E 3 HOH 10 162 12 HOH HOH A . E 3 HOH 11 163 13 HOH HOH A . E 3 HOH 12 164 15 HOH HOH A . E 3 HOH 13 165 16 HOH HOH A . E 3 HOH 14 166 17 HOH HOH A . E 3 HOH 15 167 18 HOH HOH A . E 3 HOH 16 168 20 HOH HOH A . E 3 HOH 17 169 24 HOH HOH A . E 3 HOH 18 170 27 HOH HOH A . E 3 HOH 19 171 33 HOH HOH A . E 3 HOH 20 172 34 HOH HOH A . E 3 HOH 21 173 38 HOH HOH A . E 3 HOH 22 174 43 HOH HOH A . E 3 HOH 23 175 46 HOH HOH A . E 3 HOH 24 176 91 HOH HOH A . E 3 HOH 25 177 93 HOH HOH A . F 3 HOH 1 153 6 HOH HOH B . F 3 HOH 2 154 28 HOH HOH B . F 3 HOH 3 155 29 HOH HOH B . F 3 HOH 4 156 30 HOH HOH B . F 3 HOH 5 157 31 HOH HOH B . F 3 HOH 6 158 47 HOH HOH B . F 3 HOH 7 159 49 HOH HOH B . F 3 HOH 8 160 61 HOH HOH B . F 3 HOH 9 161 64 HOH HOH B . F 3 HOH 10 162 68 HOH HOH B . F 3 HOH 11 163 69 HOH HOH B . F 3 HOH 12 164 72 HOH HOH B . F 3 HOH 13 165 73 HOH HOH B . F 3 HOH 14 166 95 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 52 ? CB ? A LYS 52 CB 2 1 Y 0 A LYS 52 ? CG ? A LYS 52 CG 3 1 Y 0 A LYS 52 ? CD ? A LYS 52 CD 4 1 Y 0 A LYS 52 ? CE ? A LYS 52 CE 5 1 Y 0 A LYS 52 ? NZ ? A LYS 52 NZ 6 1 Y 0 A ASP 53 ? CG ? A ASP 53 CG 7 1 Y 0 A ASP 53 ? OD1 ? A ASP 53 OD1 8 1 Y 0 A ASP 53 ? OD2 ? A ASP 53 OD2 9 1 Y 0 A LYS 80 ? CD ? A LYS 80 CD 10 1 Y 0 A LYS 80 ? CE ? A LYS 80 CE 11 1 Y 0 A LYS 80 ? NZ ? A LYS 80 NZ 12 1 Y 0 A LYS 84 ? CE ? A LYS 84 CE 13 1 Y 0 A LYS 84 ? NZ ? A LYS 84 NZ 14 1 Y 0 A LYS 134 ? CD ? A LYS 134 CD 15 1 Y 0 A LYS 134 ? CE ? A LYS 134 CE 16 1 Y 0 A LYS 134 ? NZ ? A LYS 134 NZ 17 1 Y 0 A ASP 136 ? CG ? A ASP 136 CG 18 1 Y 0 A ASP 136 ? OD1 ? A ASP 136 OD1 19 1 Y 0 A ASP 136 ? OD2 ? A ASP 136 OD2 20 1 Y 0 B LYS 52 ? CE ? B LYS 52 CE 21 1 Y 0 B LYS 52 ? NZ ? B LYS 52 NZ 22 1 Y 0 B ASP 53 ? CG ? B ASP 53 CG 23 1 Y 0 B ASP 53 ? OD1 ? B ASP 53 OD1 24 1 Y 0 B ASP 53 ? OD2 ? B ASP 53 OD2 25 1 Y 0 B GLU 123 ? CG ? B GLU 123 CG 26 1 Y 0 B GLU 123 ? CD ? B GLU 123 CD 27 1 Y 0 B GLU 123 ? OE1 ? B GLU 123 OE1 28 1 Y 0 B GLU 123 ? OE2 ? B GLU 123 OE2 29 1 Y 0 B GLU 126 ? CG ? B GLU 126 CG 30 1 Y 0 B GLU 126 ? CD ? B GLU 126 CD 31 1 Y 0 B GLU 126 ? OE1 ? B GLU 126 OE1 32 1 Y 0 B GLU 126 ? OE2 ? B GLU 126 OE2 33 1 Y 0 B LYS 134 ? CG ? B LYS 134 CG 34 1 Y 0 B LYS 134 ? CD ? B LYS 134 CD 35 1 Y 0 B LYS 134 ? CE ? B LYS 134 CE 36 1 Y 0 B LYS 134 ? NZ ? B LYS 134 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3NGU _cell.length_a 123.213 _cell.length_b 123.213 _cell.length_c 137.983 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NGU _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NGU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.02 _exptl_crystal.density_percent_sol 59.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PEG3350 Sodium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 291K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-05-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Silicon double-crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.458 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.pdbx_synchrotron_site LNLS _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.458 # _reflns.entry_id 3NGU _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32 _reflns.d_resolution_high 2.29 _reflns.number_obs 17366 _reflns.number_all ? _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.29 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 91.2 _reflns_shell.Rmerge_I_obs 0.436 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.pdbx_redundancy 8.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3NGU _refine.ls_number_reflns_obs 16313 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32 _refine.ls_d_res_high 2.29 _refine.ls_percent_reflns_obs 94.34 _refine.ls_R_factor_obs 0.21960 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21642 _refine.ls_R_factor_R_free 0.28286 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 886 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 57.571 _refine.aniso_B[1][1] -4.30 _refine.aniso_B[2][2] -4.30 _refine.aniso_B[3][3] 6.44 _refine.aniso_B[1][2] -2.15 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.00 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.309 _refine.pdbx_overall_ESU_R_Free 0.259 _refine.overall_SU_ML 0.183 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.316 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2346 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 2439 _refine_hist.d_res_high 2.29 _refine_hist.d_res_low 32 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.040 0.022 ? 2426 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.934 1.971 ? 3301 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.004 5.000 ? 302 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.278 23.131 ? 99 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.474 15.000 ? 380 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.703 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.217 0.200 ? 360 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.017 0.021 ? 1830 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.801 1.500 ? 1500 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.933 2.000 ? 2411 'X-RAY DIFFRACTION' ? r_scbond_it 4.924 3.000 ? 926 'X-RAY DIFFRACTION' ? r_scangle_it 6.751 4.500 ? 889 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.294 _refine_ls_shell.d_res_low 2.354 _refine_ls_shell.number_reflns_R_work 1087 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 85.80 _refine_ls_shell.R_factor_R_free 0.424 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3NGU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NGU _struct.title 'Structure of Leishmania NDKb complexed with ADP.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NGU _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'NDKb, ADP, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9U1E1_LEIMA _struct_ref.pdbx_db_accession Q9U1E1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGK NVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVESAEREIAFWFKADEIASWTSHSVSQIYE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NGU A 1 ? 151 ? Q9U1E1 1 ? 151 ? 1 151 2 1 3NGU B 1 ? 151 ? Q9U1E1 1 ? 151 ? 1 151 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 19530 ? 1 MORE -103 ? 1 'SSA (A^2)' 32980 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 11 ? ARG A 17 ? LYS A 11 ARG A 17 1 ? 7 HELX_P HELX_P2 2 LEU A 19 ? GLY A 31 ? LEU A 19 GLY A 31 1 ? 13 HELX_P HELX_P3 3 THR A 43 ? TYR A 51 ? THR A 43 TYR A 51 1 ? 9 HELX_P HELX_P4 4 LYS A 52 ? CYS A 55 ? LYS A 52 CYS A 55 5 ? 4 HELX_P HELX_P5 5 PHE A 59 ? SER A 68 ? PHE A 59 SER A 68 1 ? 10 HELX_P HELX_P6 6 ASN A 81 ? GLY A 91 ? ASN A 81 GLY A 91 1 ? 11 HELX_P HELX_P7 7 ASN A 94 ? SER A 98 ? ASN A 94 SER A 98 5 ? 5 HELX_P HELX_P8 8 THR A 102 ? ALA A 108 ? THR A 102 ALA A 108 1 ? 7 HELX_P HELX_P9 9 SER A 121 ? PHE A 133 ? SER A 121 PHE A 133 1 ? 13 HELX_P HELX_P10 10 SER A 145 ? TYR A 150 ? SER A 145 TYR A 150 1 ? 6 HELX_P HELX_P11 11 LYS B 11 ? ARG B 17 ? LYS B 11 ARG B 17 1 ? 7 HELX_P HELX_P12 12 LEU B 19 ? LYS B 30 ? LEU B 19 LYS B 30 1 ? 12 HELX_P HELX_P13 13 THR B 43 ? TYR B 51 ? THR B 43 TYR B 51 1 ? 9 HELX_P HELX_P14 14 LYS B 52 ? CYS B 55 ? LYS B 52 CYS B 55 5 ? 4 HELX_P HELX_P15 15 PHE B 59 ? SER B 68 ? PHE B 59 SER B 68 1 ? 10 HELX_P HELX_P16 16 ASN B 81 ? GLY B 91 ? ASN B 81 GLY B 91 1 ? 11 HELX_P HELX_P17 17 ASN B 94 ? SER B 98 ? ASN B 94 SER B 98 5 ? 5 HELX_P HELX_P18 18 THR B 102 ? ALA B 108 ? THR B 102 ALA B 108 1 ? 7 HELX_P HELX_P19 19 ASP B 110 ? ASN B 114 ? ASP B 110 ASN B 114 5 ? 5 HELX_P HELX_P20 20 SER B 121 ? PHE B 133 ? SER B 121 PHE B 133 1 ? 13 HELX_P HELX_P21 21 LYS B 134 ? ILE B 138 ? LYS B 134 ILE B 138 5 ? 5 HELX_P HELX_P22 22 SER B 145 ? TYR B 150 ? SER B 145 TYR B 150 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 33 ? LEU A 40 ? LYS A 33 LEU A 40 A 2 ILE A 72 ? GLU A 78 ? ILE A 72 GLU A 78 A 3 ARG A 5 ? VAL A 10 ? ARG A 5 VAL A 10 A 4 CYS A 116 ? GLY A 118 ? CYS A 116 GLY A 118 B 1 LYS B 33 ? LEU B 40 ? LYS B 33 LEU B 40 B 2 ILE B 72 ? GLU B 78 ? ILE B 72 GLU B 78 B 3 ARG B 5 ? VAL B 10 ? ARG B 5 VAL B 10 B 4 CYS B 116 ? GLY B 118 ? CYS B 116 GLY B 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 33 ? N LYS A 33 O GLU A 78 ? O GLU A 78 A 2 3 O VAL A 73 ? O VAL A 73 N VAL A 10 ? N VAL A 10 A 3 4 N ALA A 9 ? N ALA A 9 O HIS A 117 ? O HIS A 117 B 1 2 N LYS B 33 ? N LYS B 33 O GLU B 78 ? O GLU B 78 B 2 3 O MET B 75 ? O MET B 75 N ILE B 8 ? N ILE B 8 B 3 4 N ALA B 9 ? N ALA B 9 O HIS B 117 ? O HIS B 117 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ADP 152 ? 8 'BINDING SITE FOR RESIDUE ADP A 152' AC2 Software B ADP 152 ? 7 'BINDING SITE FOR RESIDUE ADP B 152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS A 11 ? LYS A 11 . ? 1_555 ? 2 AC1 8 PHE A 59 ? PHE A 59 . ? 1_555 ? 3 AC1 8 LEU A 63 ? LEU A 63 . ? 1_555 ? 4 AC1 8 ARG A 87 ? ARG A 87 . ? 1_555 ? 5 AC1 8 THR A 93 ? THR A 93 . ? 1_555 ? 6 AC1 8 ARG A 104 ? ARG A 104 . ? 1_555 ? 7 AC1 8 VAL A 111 ? VAL A 111 . ? 1_555 ? 8 AC1 8 ASN A 114 ? ASN A 114 . ? 1_555 ? 9 AC2 7 LYS B 11 ? LYS B 11 . ? 1_555 ? 10 AC2 7 PHE B 59 ? PHE B 59 . ? 1_555 ? 11 AC2 7 LEU B 63 ? LEU B 63 . ? 1_555 ? 12 AC2 7 ARG B 87 ? ARG B 87 . ? 1_555 ? 13 AC2 7 THR B 93 ? THR B 93 . ? 1_555 ? 14 AC2 7 VAL B 111 ? VAL B 111 . ? 1_555 ? 15 AC2 7 ASN B 114 ? ASN B 114 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 4 ? ? CD A GLU 4 ? ? 1.639 1.515 0.124 0.015 N 2 1 CE A LYS 11 ? ? NZ A LYS 11 ? ? 1.648 1.486 0.162 0.025 N 3 1 CZ A PHE 27 ? ? CE2 A PHE 27 ? ? 1.509 1.369 0.140 0.019 N 4 1 CD A LYS 33 ? ? CE A LYS 33 ? ? 1.660 1.508 0.152 0.025 N 5 1 CG A GLN 46 ? ? CD A GLN 46 ? ? 1.649 1.506 0.143 0.023 N 6 1 CA A LYS 52 ? ? CB A LYS 52 ? ? 1.366 1.535 -0.169 0.022 N 7 1 CB A ASP 53 ? ? CG A ASP 53 ? ? 1.307 1.513 -0.206 0.021 N 8 1 CD1 A TYR 66 ? ? CE1 A TYR 66 ? ? 1.495 1.389 0.106 0.015 N 9 1 CG A LYS 80 ? ? CD A LYS 80 ? ? 1.306 1.520 -0.214 0.034 N 10 1 CB A SER 98 ? ? OG A SER 98 ? ? 1.317 1.418 -0.101 0.013 N 11 1 CB A VAL 115 ? ? CG2 A VAL 115 ? ? 1.392 1.524 -0.132 0.021 N 12 1 CG A GLU 123 ? ? CD A GLU 123 ? ? 1.616 1.515 0.101 0.015 N 13 1 CG A GLU 126 ? ? CD A GLU 126 ? ? 1.634 1.515 0.119 0.015 N 14 1 CD A GLU 126 ? ? OE1 A GLU 126 ? ? 1.319 1.252 0.067 0.011 N 15 1 CZ A PHE 133 ? ? CE2 A PHE 133 ? ? 1.511 1.369 0.142 0.019 N 16 1 CG A LYS 134 ? ? CD A LYS 134 ? ? 1.195 1.520 -0.325 0.034 N 17 1 CB A ASP 136 ? ? CG A ASP 136 ? ? 1.275 1.513 -0.238 0.021 N 18 1 CG B GLU 22 ? ? CD B GLU 22 ? ? 1.632 1.515 0.117 0.015 N 19 1 CA B ILE 23 ? ? CB B ILE 23 ? ? 1.702 1.544 0.158 0.023 N 20 1 CZ B PHE 27 ? ? CE2 B PHE 27 ? ? 1.511 1.369 0.142 0.019 N 21 1 CG B GLU 28 ? ? CD B GLU 28 ? ? 1.629 1.515 0.114 0.015 N 22 1 CD B GLU 28 ? ? OE2 B GLU 28 ? ? 1.321 1.252 0.069 0.011 N 23 1 CA B VAL 35 ? ? CB B VAL 35 ? ? 1.710 1.543 0.167 0.021 N 24 1 CD B LYS 52 ? ? CE B LYS 52 ? ? 1.200 1.508 -0.308 0.025 N 25 1 CB B ASP 53 ? ? CG B ASP 53 ? ? 1.718 1.513 0.205 0.021 N 26 1 CB B VAL 73 ? ? CG2 B VAL 73 ? ? 1.387 1.524 -0.137 0.021 N 27 1 CB B CYS 74 ? ? SG B CYS 74 ? ? 1.669 1.812 -0.143 0.016 N 28 1 CB B LYS 80 ? ? CG B LYS 80 ? ? 1.697 1.521 0.176 0.027 N 29 1 CB B VAL 115 ? ? CG2 B VAL 115 ? ? 1.389 1.524 -0.135 0.021 N 30 1 CB B GLU 123 ? ? CG B GLU 123 ? ? 1.685 1.517 0.168 0.019 N 31 1 CA B ALA 125 ? ? CB B ALA 125 ? ? 1.693 1.520 0.173 0.021 N 32 1 CB B TRP 141 ? ? CG B TRP 141 ? ? 1.625 1.498 0.127 0.018 N 33 1 CD1 B TYR 150 ? ? CE1 B TYR 150 ? ? 1.517 1.389 0.128 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 117.10 120.30 -3.20 0.50 N 2 1 CA A LEU 37 ? ? CB A LEU 37 ? ? CG A LEU 37 ? ? 130.65 115.30 15.35 2.30 N 3 1 CA A ASP 136 ? ? CB A ASP 136 ? ? CG A ASP 136 ? ? 130.24 113.40 16.84 2.20 N 4 1 CB A ASP 136 ? ? CG A ASP 136 ? ? OD1 A ASP 136 ? ? 100.46 118.30 -17.84 0.90 N 5 1 CB A ASP 136 ? ? CG A ASP 136 ? ? OD2 A ASP 136 ? ? 133.14 118.30 14.84 0.90 N 6 1 CA A GLU 151 ? ? C A GLU 151 ? ? O A GLU 151 ? ? 132.95 120.10 12.85 2.10 N 7 1 NH1 B ARG 5 ? ? CZ B ARG 5 ? ? NH2 B ARG 5 ? ? 126.01 119.40 6.61 1.10 N 8 1 NE B ARG 5 ? ? CZ B ARG 5 ? ? NH2 B ARG 5 ? ? 115.02 120.30 -5.28 0.50 N 9 1 NE B ARG 26 ? ? CZ B ARG 26 ? ? NH1 B ARG 26 ? ? 123.45 120.30 3.15 0.50 N 10 1 CA B ASP 53 ? ? CB B ASP 53 ? ? CG B ASP 53 ? ? 88.31 113.40 -25.09 2.20 N 11 1 CB B ASP 53 ? ? CG B ASP 53 ? ? OD1 B ASP 53 ? ? 102.27 118.30 -16.03 0.90 N 12 1 CB B ASP 53 ? ? CG B ASP 53 ? ? OD2 B ASP 53 ? ? 134.20 118.30 15.90 0.90 N 13 1 CA B LEU 54 ? ? CB B LEU 54 ? ? CG B LEU 54 ? ? 133.52 115.30 18.22 2.30 N 14 1 CA B GLU 123 ? ? CB B GLU 123 ? ? CG B GLU 123 ? ? 90.97 113.40 -22.43 2.20 N 15 1 CA B LYS 134 ? ? CB B LYS 134 ? ? CG B LYS 134 ? ? 126.79 113.40 13.39 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 52 ? ? -19.58 -53.94 2 1 VAL A 115 ? ? 72.00 -33.40 3 1 ASP A 136 ? ? 94.62 -33.58 4 1 HIS A 144 ? ? -65.26 0.71 5 1 VAL B 35 ? ? -143.40 -4.45 6 1 ALA B 36 ? ? -172.81 140.18 7 1 ASP B 53 ? ? -62.70 8.11 8 1 VAL B 115 ? ? 73.37 -30.89 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 TYR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 150 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 151 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 145.65 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 HOH O O N N 200 HOH H1 H N N 201 HOH H2 H N N 202 ILE N N N N 203 ILE CA C N S 204 ILE C C N N 205 ILE O O N N 206 ILE CB C N S 207 ILE CG1 C N N 208 ILE CG2 C N N 209 ILE CD1 C N N 210 ILE OXT O N N 211 ILE H H N N 212 ILE H2 H N N 213 ILE HA H N N 214 ILE HB H N N 215 ILE HG12 H N N 216 ILE HG13 H N N 217 ILE HG21 H N N 218 ILE HG22 H N N 219 ILE HG23 H N N 220 ILE HD11 H N N 221 ILE HD12 H N N 222 ILE HD13 H N N 223 ILE HXT H N N 224 LEU N N N N 225 LEU CA C N S 226 LEU C C N N 227 LEU O O N N 228 LEU CB C N N 229 LEU CG C N N 230 LEU CD1 C N N 231 LEU CD2 C N N 232 LEU OXT O N N 233 LEU H H N N 234 LEU H2 H N N 235 LEU HA H N N 236 LEU HB2 H N N 237 LEU HB3 H N N 238 LEU HG H N N 239 LEU HD11 H N N 240 LEU HD12 H N N 241 LEU HD13 H N N 242 LEU HD21 H N N 243 LEU HD22 H N N 244 LEU HD23 H N N 245 LEU HXT H N N 246 LYS N N N N 247 LYS CA C N S 248 LYS C C N N 249 LYS O O N N 250 LYS CB C N N 251 LYS CG C N N 252 LYS CD C N N 253 LYS CE C N N 254 LYS NZ N N N 255 LYS OXT O N N 256 LYS H H N N 257 LYS H2 H N N 258 LYS HA H N N 259 LYS HB2 H N N 260 LYS HB3 H N N 261 LYS HG2 H N N 262 LYS HG3 H N N 263 LYS HD2 H N N 264 LYS HD3 H N N 265 LYS HE2 H N N 266 LYS HE3 H N N 267 LYS HZ1 H N N 268 LYS HZ2 H N N 269 LYS HZ3 H N N 270 LYS HXT H N N 271 MET N N N N 272 MET CA C N S 273 MET C C N N 274 MET O O N N 275 MET CB C N N 276 MET CG C N N 277 MET SD S N N 278 MET CE C N N 279 MET OXT O N N 280 MET H H N N 281 MET H2 H N N 282 MET HA H N N 283 MET HB2 H N N 284 MET HB3 H N N 285 MET HG2 H N N 286 MET HG3 H N N 287 MET HE1 H N N 288 MET HE2 H N N 289 MET HE3 H N N 290 MET HXT H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TRP N N N N 363 TRP CA C N S 364 TRP C C N N 365 TRP O O N N 366 TRP CB C N N 367 TRP CG C Y N 368 TRP CD1 C Y N 369 TRP CD2 C Y N 370 TRP NE1 N Y N 371 TRP CE2 C Y N 372 TRP CE3 C Y N 373 TRP CZ2 C Y N 374 TRP CZ3 C Y N 375 TRP CH2 C Y N 376 TRP OXT O N N 377 TRP H H N N 378 TRP H2 H N N 379 TRP HA H N N 380 TRP HB2 H N N 381 TRP HB3 H N N 382 TRP HD1 H N N 383 TRP HE1 H N N 384 TRP HE3 H N N 385 TRP HZ2 H N N 386 TRP HZ3 H N N 387 TRP HH2 H N N 388 TRP HXT H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # _atom_sites.entry_id 3NGU _atom_sites.fract_transf_matrix[1][1] 0.008116 _atom_sites.fract_transf_matrix[1][2] 0.004686 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009372 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007247 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_