HEADER LIGASE 14-JUN-10 3NI2 TITLE CRYSTAL STRUCTURES AND ENZYMATIC MECHANISMS OF A POPULUS TOMENTOSA 4- TITLE 2 COUMARATE:COA LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-COUMARATE:COA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.2.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TOMENTOSA; SOURCE 3 ORGANISM_TAXID: 118781; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE31 KEYWDS 4-COUMARATE:COA LIGASE, 4CL, PHENYLPROPANOID BIOSYNTHESIS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HU,L.YIN,Y.GAI,X.X.WANG,D.C.WANG REVDAT 3 01-NOV-23 3NI2 1 REMARK REVDAT 2 29-APR-15 3NI2 1 JRNL VERSN REVDAT 1 08-SEP-10 3NI2 0 JRNL AUTH Y.HU,Y.GAI,L.YIN,X.WANG,C.FENG,L.FENG,D.LI,X.N.JIANG, JRNL AUTH 2 D.C.WANG JRNL TITL CRYSTAL STRUCTURES OF A POPULUS TOMENTOSA 4-COUMARATE:COA JRNL TITL 2 LIGASE SHED LIGHT ON ITS ENZYMATIC MECHANISMS JRNL REF PLANT CELL V. 22 3093 2010 JRNL REFN ISSN 1040-4651 JRNL PMID 20841425 JRNL DOI 10.1105/TPC.109.072652 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2791 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.333 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 58.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : L1.PARAM REMARK 3 PARAMETER FILE 5 : EPE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 114.205 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM CITRATE, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 80.75500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 80.75500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 80.75500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 80.75500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 80.75500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 80.75500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 80.75500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 80.75500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.75500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.75500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 80.75500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.75500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 80.75500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 80.75500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 80.75500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 80.75500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 80.75500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 80.75500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 80.75500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 80.75500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 80.75500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 940 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1041 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 533 REMARK 465 ALA A 534 REMARK 465 GLY A 535 REMARK 465 ILE A 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 ASP A 471 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 969 O HOH A 969 14555 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 6 70.69 60.02 REMARK 500 HIS A 35 40.89 -156.10 REMARK 500 ALA A 139 -71.83 -46.51 REMARK 500 GLU A 141 -16.95 -175.90 REMARK 500 ASP A 150 -98.98 -103.88 REMARK 500 ASP A 154 -136.37 57.85 REMARK 500 ILE A 241 -62.69 -107.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AYL A 537 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 538 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 539 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 540 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A9U RELATED DB: PDB REMARK 900 SAME PROTEIN, APO FORM REMARK 900 RELATED ID: 3A9V RELATED DB: PDB REMARK 900 SAME PROTEIN, COMPLEXED WITH AMP DBREF 3NI2 A 1 536 UNP Q941M3 Q941M3_POPTO 1 536 SEQRES 1 A 536 MET ASN PRO GLN GLU GLU PHE ILE PHE ARG SER LYS LEU SEQRES 2 A 536 PRO ASP ILE TYR ILE PRO LYS ASN LEU PRO LEU HIS SER SEQRES 3 A 536 TYR VAL LEU GLU ASN LEU SER ASN HIS SER SER LYS PRO SEQRES 4 A 536 CYS LEU ILE ASN GLY ALA ASN GLY ASP VAL TYR THR TYR SEQRES 5 A 536 ALA ASP VAL GLU LEU THR ALA ARG ARG VAL ALA SER GLY SEQRES 6 A 536 LEU ASN LYS ILE GLY ILE GLN GLN GLY ASP VAL ILE MET SEQRES 7 A 536 LEU PHE LEU PRO SER SER PRO GLU PHE VAL LEU ALA PHE SEQRES 8 A 536 LEU GLY ALA SER HIS ARG GLY ALA ILE ILE THR ALA ALA SEQRES 9 A 536 ASN PRO PHE SER THR PRO ALA GLU LEU ALA LYS HIS ALA SEQRES 10 A 536 LYS ALA SER ARG ALA LYS LEU LEU ILE THR GLN ALA CYS SEQRES 11 A 536 TYR TYR GLU LYS VAL LYS ASP PHE ALA ARG GLU SER ASP SEQRES 12 A 536 VAL LYS VAL MET CYS VAL ASP SER ALA PRO ASP GLY CYS SEQRES 13 A 536 LEU HIS PHE SER GLU LEU THR GLN ALA ASP GLU ASN GLU SEQRES 14 A 536 ALA PRO GLN VAL ASP ILE SER PRO ASP ASP VAL VAL ALA SEQRES 15 A 536 LEU PRO TYR SER SER GLY THR THR GLY LEU PRO LYS GLY SEQRES 16 A 536 VAL MET LEU THR HIS LYS GLY LEU ILE THR SER VAL ALA SEQRES 17 A 536 GLN GLN VAL ASP GLY ASP ASN PRO ASN LEU TYR PHE HIS SEQRES 18 A 536 SER GLU ASP VAL ILE LEU CYS VAL LEU PRO MET PHE HIS SEQRES 19 A 536 ILE TYR ALA LEU ASN SER ILE MET LEU CYS GLY LEU ARG SEQRES 20 A 536 VAL GLY ALA PRO ILE LEU ILE MET PRO LYS PHE GLU ILE SEQRES 21 A 536 GLY SER LEU LEU GLY LEU ILE GLU LYS TYR LYS VAL SER SEQRES 22 A 536 ILE ALA PRO VAL VAL PRO PRO VAL MET MET SER ILE ALA SEQRES 23 A 536 LYS SER PRO ASP LEU ASP LYS HIS ASP LEU SER SER LEU SEQRES 24 A 536 ARG MET ILE LYS SER GLY GLY ALA PRO LEU GLY LYS GLU SEQRES 25 A 536 LEU GLU ASP THR VAL ARG ALA LYS PHE PRO GLN ALA ARG SEQRES 26 A 536 LEU GLY GLN GLY TYR GLY MET THR GLU ALA GLY PRO VAL SEQRES 27 A 536 LEU ALA MET CYS LEU ALA PHE ALA LYS GLU PRO PHE ASP SEQRES 28 A 536 ILE LYS PRO GLY ALA CYS GLY THR VAL VAL ARG ASN ALA SEQRES 29 A 536 GLU MET LYS ILE VAL ASP PRO GLU THR GLY ALA SER LEU SEQRES 30 A 536 PRO ARG ASN GLN PRO GLY GLU ILE CYS ILE ARG GLY ASP SEQRES 31 A 536 GLN ILE MET LYS GLY TYR LEU ASN ASP PRO GLU ALA THR SEQRES 32 A 536 SER ARG THR ILE ASP LYS GLU GLY TRP LEU HIS THR GLY SEQRES 33 A 536 ASP ILE GLY TYR ILE ASP ASP ASP ASP GLU LEU PHE ILE SEQRES 34 A 536 VAL ASP ARG LEU LYS GLU LEU ILE LYS TYR LYS GLY PHE SEQRES 35 A 536 GLN VAL ALA PRO ALA GLU LEU GLU ALA LEU LEU ILE ALA SEQRES 36 A 536 HIS PRO GLU ILE SER ASP ALA ALA VAL VAL GLY LEU LYS SEQRES 37 A 536 ASP GLU ASP ALA GLY GLU VAL PRO VAL ALA PHE VAL VAL SEQRES 38 A 536 LYS SER GLU LYS SER GLN ALA THR GLU ASP GLU ILE LYS SEQRES 39 A 536 GLN TYR ILE SER LYS GLN VAL ILE PHE TYR LYS ARG ILE SEQRES 40 A 536 LYS ARG VAL PHE PHE ILE GLU ALA ILE PRO LYS ALA PRO SEQRES 41 A 536 SER GLY LYS ILE LEU ARG LYS ASN LEU LYS GLU LYS LEU SEQRES 42 A 536 ALA GLY ILE HET AYL A 537 33 HET EPE A 538 15 HET EPE A 539 15 HET EPE A 540 15 HETNAM AYL 5'-O-{(S)-HYDROXY[3-(4-HYDROXYPHENYL) HETNAM 2 AYL PROPOXY]PHOSPHORYL}ADENOSINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 AYL C19 H24 N5 O8 P FORMUL 3 EPE 3(C8 H18 N2 O4 S) FORMUL 6 HOH *555(H2 O) HELIX 1 1 PRO A 23 LEU A 29 1 7 HELIX 2 2 ASN A 31 HIS A 35 5 5 HELIX 3 3 TYR A 52 ILE A 69 1 18 HELIX 4 4 SER A 84 GLY A 98 1 15 HELIX 5 5 THR A 109 ARG A 121 1 13 HELIX 6 6 ALA A 129 TYR A 131 5 3 HELIX 7 7 TYR A 132 ARG A 140 1 9 HELIX 8 8 PHE A 159 GLN A 164 1 6 HELIX 9 9 ASP A 166 ALA A 170 5 5 HELIX 10 10 HIS A 200 ASP A 212 1 13 HELIX 11 11 HIS A 234 ILE A 241 1 8 HELIX 12 12 ILE A 241 GLY A 249 1 9 HELIX 13 13 GLU A 259 LYS A 271 1 13 HELIX 14 14 VAL A 278 LYS A 287 1 10 HELIX 15 15 ASP A 290 HIS A 294 5 5 HELIX 16 16 GLY A 310 PHE A 321 1 12 HELIX 17 17 THR A 333 GLY A 336 5 4 HELIX 18 18 LEU A 343 ALA A 346 5 4 HELIX 19 19 ASP A 399 ILE A 407 1 9 HELIX 20 20 ALA A 445 ALA A 455 1 11 HELIX 21 21 THR A 489 LYS A 499 1 11 HELIX 22 22 ILE A 502 ARG A 506 5 5 HELIX 23 23 LEU A 525 GLU A 531 1 7 SHEET 1 A 4 VAL A 49 THR A 51 0 SHEET 2 A 4 PRO A 39 ASN A 43 -1 N CYS A 40 O TYR A 50 SHEET 3 A 4 ILE A 252 ILE A 254 1 O ILE A 254 N ILE A 42 SHEET 4 A 4 ILE A 226 CYS A 228 1 N CYS A 228 O LEU A 253 SHEET 1 B 5 ILE A 100 ALA A 103 0 SHEET 2 B 5 VAL A 76 PHE A 80 1 N ILE A 77 O ILE A 100 SHEET 3 B 5 ALA A 122 THR A 127 1 O LEU A 124 N MET A 78 SHEET 4 B 5 LYS A 145 CYS A 148 1 O MET A 147 N LEU A 125 SHEET 5 B 5 LEU A 157 HIS A 158 1 O LEU A 157 N VAL A 146 SHEET 1 C 3 VAL A 180 ALA A 182 0 SHEET 2 C 3 LYS A 194 THR A 199 -1 O LEU A 198 N VAL A 181 SHEET 3 C 3 TYR A 185 SER A 186 -1 N SER A 186 O LYS A 194 SHEET 1 D 3 VAL A 180 ALA A 182 0 SHEET 2 D 3 LYS A 194 THR A 199 -1 O LEU A 198 N VAL A 181 SHEET 3 D 3 GLY A 395 TYR A 396 -1 O GLY A 395 N MET A 197 SHEET 1 E 5 ILE A 274 VAL A 277 0 SHEET 2 E 5 MET A 301 GLY A 305 1 O LYS A 303 N VAL A 277 SHEET 3 E 5 ARG A 325 GLY A 331 1 O GLY A 327 N SER A 304 SHEET 4 E 5 VAL A 338 MET A 341 -1 O LEU A 339 N TYR A 330 SHEET 5 E 5 THR A 359 VAL A 360 -1 O THR A 359 N MET A 341 SHEET 1 F 4 GLU A 365 VAL A 369 0 SHEET 2 F 4 GLY A 383 ARG A 388 -1 O GLU A 384 N VAL A 369 SHEET 3 F 4 LEU A 413 ILE A 421 -1 O LEU A 413 N ILE A 387 SHEET 4 F 4 LEU A 427 ARG A 432 -1 O PHE A 428 N TYR A 420 SHEET 1 G 2 ILE A 437 TYR A 439 0 SHEET 2 G 2 PHE A 442 VAL A 444 -1 O PHE A 442 N TYR A 439 SHEET 1 H 3 ILE A 459 ASP A 469 0 SHEET 2 H 3 GLY A 473 LYS A 482 -1 O GLY A 473 N ASP A 469 SHEET 3 H 3 ARG A 509 PHE A 512 1 O PHE A 511 N ALA A 478 CISPEP 1 GLY A 336 PRO A 337 0 0.61 SITE 1 AC1 20 TYR A 236 SER A 240 LYS A 303 GLY A 306 SITE 2 AC1 20 ALA A 307 PRO A 308 GLN A 328 GLY A 329 SITE 3 AC1 20 GLY A 331 THR A 333 PRO A 337 VAL A 338 SITE 4 AC1 20 ASP A 417 LYS A 434 LYS A 438 GLN A 443 SITE 5 AC1 20 HOH A 571 HOH A 583 HOH A 655 HOH A 869 SITE 1 AC2 13 LYS A 115 ALA A 119 TYR A 185 PRO A 193 SITE 2 AC2 13 LYS A 505 HOH A 596 HOH A 598 HOH A 605 SITE 3 AC2 13 HOH A 618 HOH A 638 HOH A 744 HOH A 793 SITE 4 AC2 13 HOH A 809 SITE 1 AC3 16 ASP A 15 ILE A 16 TYR A 17 ILE A 18 SITE 2 AC3 16 LYS A 20 VAL A 76 ILE A 100 SER A 120 SITE 3 AC3 16 ARG A 121 ASN A 363 LYS A 394 HOH A 562 SITE 4 AC3 16 HOH A 608 HOH A 610 HOH A 622 HOH A 892 SITE 1 AC4 5 GLU A 348 PRO A 349 PHE A 350 ASP A 351 SITE 2 AC4 5 HOH A1036 CRYST1 161.510 161.510 161.510 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006192 0.00000