HEADER HYDROLASE 16-JUN-10 3NIQ TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA GUANIDINOPROPIONASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-GUANIDINOPROPIONASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.3.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: GPUA, PA0288; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS GUANIDINOPROPIONASE, GPUA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.LEE,H.S.KIM,D.J.KIM,H.J.YOON,K.H.KIM,J.Y.YOON,J.Y.JANG,H.IM,D.AN, AUTHOR 2 S.W.SUH REVDAT 3 01-NOV-23 3NIQ 1 REMARK SEQADV LINK REVDAT 2 26-FEB-14 3NIQ 1 JRNL VERSN REVDAT 1 01-JUN-11 3NIQ 0 JRNL AUTH S.J.LEE,D.J.KIM,H.S.KIM,B.I.LEE,H.J.YOON,J.Y.YOON,K.H.KIM, JRNL AUTH 2 J.Y.JANG,H.N.IM,D.R.AN,J.S.SONG,H.J.KIM,S.W.SUH JRNL TITL CRYSTAL STRUCTURES OF PSEUDOMONAS AERUGINOSA JRNL TITL 2 GUANIDINOBUTYRASE AND GUANIDINOPROPIONASE, MEMBERS OF THE JRNL TITL 3 UREOHYDROLASE SUPERFAMILY JRNL REF J.STRUCT.BIOL. V. 175 329 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21600989 JRNL DOI 10.1016/J.JSB.2011.05.002 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2640 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4874 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6638 ; 1.198 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 5.584 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;30.389 ;22.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;13.066 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;15.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 744 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3814 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3118 ; 0.837 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5013 ; 1.448 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 2.134 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1625 ; 3.338 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3NIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES AT PH 6.5, 12% (W/V) PEG REMARK 280 20000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.98050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.98050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.98050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.98050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.98050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.98050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 61.98050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 61.98050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 61.98050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 61.98050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 61.98050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 61.98050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 61.98050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 61.98050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 61.98050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 61.98050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 61.98050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 61.98050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 428 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 319 REMARK 465 GLU A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 317 REMARK 465 ALA B 318 REMARK 465 LEU B 319 REMARK 465 GLU B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 155 NH2 ARG B 171 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 24 18.36 56.52 REMARK 500 ASN A 50 -102.54 -122.89 REMARK 500 ASP A 155 -67.89 -98.09 REMARK 500 ASP A 160 55.07 -119.92 REMARK 500 PRO A 195 9.96 -68.85 REMARK 500 ASP A 198 8.00 -68.72 REMARK 500 MET B 24 20.00 57.01 REMARK 500 ASN B 50 -100.51 -120.01 REMARK 500 ARG B 69 -168.42 -110.17 REMARK 500 VAL B 74 -62.34 -95.95 REMARK 500 PHE B 158 55.08 31.87 REMARK 500 ASP B 160 39.62 -85.04 REMARK 500 ASP B 198 41.70 -98.81 REMARK 500 ALA B 315 45.64 -79.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 148 OD2 91.8 REMARK 620 3 ASP A 152 OD2 83.8 84.6 REMARK 620 4 ASP A 240 OD2 106.9 85.6 165.7 REMARK 620 5 HOH A 367 O 163.4 100.7 86.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 OD1 REMARK 620 2 HIS A 150 ND1 97.4 REMARK 620 3 ASP A 240 OD2 88.0 172.0 REMARK 620 4 ASP A 242 OD2 136.9 89.4 90.6 REMARK 620 5 ASP A 242 OD1 82.3 99.5 87.0 54.6 REMARK 620 6 HOH A 367 O 100.1 86.7 86.6 122.8 173.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 126 ND1 REMARK 620 2 ASP B 148 OD2 92.5 REMARK 620 3 ASP B 152 OD2 88.0 89.6 REMARK 620 4 ASP B 240 OD2 102.5 86.4 168.9 REMARK 620 5 HOH B 371 O 164.5 101.7 85.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 148 OD1 REMARK 620 2 HIS B 150 ND1 96.7 REMARK 620 3 ASP B 240 OD2 86.5 173.3 REMARK 620 4 ASP B 242 OD2 135.2 90.0 91.9 REMARK 620 5 ASP B 242 OD1 81.1 99.2 87.1 54.1 REMARK 620 6 HOH B 371 O 97.2 86.3 87.5 127.5 174.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NIO RELATED DB: PDB REMARK 900 RELATED ID: 3NIP RELATED DB: PDB DBREF 3NIQ A 1 318 UNP Q9I6K2 Q9I6K2_PSEAE 1 318 DBREF 3NIQ B 1 318 UNP Q9I6K2 Q9I6K2_PSEAE 1 318 SEQADV 3NIQ LEU A 319 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ GLU A 320 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS A 321 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS A 322 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS A 323 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS A 324 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS A 325 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS A 326 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ LEU B 319 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ GLU B 320 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS B 321 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS B 322 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS B 323 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS B 324 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS B 325 UNP Q9I6K2 EXPRESSION TAG SEQADV 3NIQ HIS B 326 UNP Q9I6K2 EXPRESSION TAG SEQRES 1 A 326 MET SER ASN ASP HIS PRO GLN PRO LEU ASP ALA ALA GLU SEQRES 2 A 326 ILE PRO ARG PHE ALA GLY ILE PRO THR PHE MET ARG LEU SEQRES 3 A 326 PRO ALA PHE THR ASP PRO ALA ALA LEU GLN VAL GLY LEU SEQRES 4 A 326 ILE GLY VAL PRO TRP ASP GLY GLY THR THR ASN ARG ALA SEQRES 5 A 326 GLY ALA ARG HIS GLY PRO ARG GLU VAL ARG ASN LEU SER SEQRES 6 A 326 SER LEU MET ARG LYS VAL HIS HIS VAL SER ARG ILE ALA SEQRES 7 A 326 PRO TYR ASP LEU VAL ARG VAL GLY ASP LEU GLY ASP ALA SEQRES 8 A 326 PRO VAL ASN PRO ILE ASP LEU LEU ASP SER LEU ARG ARG SEQRES 9 A 326 ILE GLU GLY PHE TYR ARG GLN VAL HIS ALA ALA GLY THR SEQRES 10 A 326 LEU PRO LEU SER VAL GLY GLY ASP HIS LEU VAL THR LEU SEQRES 11 A 326 PRO ILE PHE ARG ALA LEU GLY ARG GLU ARG PRO LEU GLY SEQRES 12 A 326 MET VAL HIS PHE ASP ALA HIS SER ASP THR ASN ASP ARG SEQRES 13 A 326 TYR PHE GLY ASP ASN PRO TYR THR HIS GLY THR PRO PHE SEQRES 14 A 326 ARG ARG ALA ILE GLU GLU GLY LEU LEU ASP PRO LEU ARG SEQRES 15 A 326 THR VAL GLN ILE GLY ILE ARG GLY SER VAL TYR SER PRO SEQRES 16 A 326 ASP ASP ASP ALA PHE ALA ARG GLU CYS GLY ILE ARG VAL SEQRES 17 A 326 ILE HIS MET GLU GLU PHE VAL GLU LEU GLY VAL GLU ALA SEQRES 18 A 326 THR LEU ALA GLU ALA ARG ARG VAL VAL GLY ALA GLY PRO SEQRES 19 A 326 THR TYR VAL SER PHE ASP VAL ASP VAL LEU ASP PRO ALA SEQRES 20 A 326 PHE ALA PRO GLY THR GLY THR PRO GLU ILE GLY GLY MET SEQRES 21 A 326 THR SER LEU GLN ALA GLN GLN LEU VAL ARG GLY LEU ARG SEQRES 22 A 326 GLY LEU ASP LEU VAL GLY ALA ASP VAL VAL GLU VAL SER SEQRES 23 A 326 PRO PRO PHE ASP VAL GLY GLY ALA THR ALA LEU VAL GLY SEQRES 24 A 326 ALA THR MET MET PHE GLU LEU LEU CYS LEU LEU ALA GLU SEQRES 25 A 326 SER ALA ALA ARG SER ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 26 A 326 HIS SEQRES 1 B 326 MET SER ASN ASP HIS PRO GLN PRO LEU ASP ALA ALA GLU SEQRES 2 B 326 ILE PRO ARG PHE ALA GLY ILE PRO THR PHE MET ARG LEU SEQRES 3 B 326 PRO ALA PHE THR ASP PRO ALA ALA LEU GLN VAL GLY LEU SEQRES 4 B 326 ILE GLY VAL PRO TRP ASP GLY GLY THR THR ASN ARG ALA SEQRES 5 B 326 GLY ALA ARG HIS GLY PRO ARG GLU VAL ARG ASN LEU SER SEQRES 6 B 326 SER LEU MET ARG LYS VAL HIS HIS VAL SER ARG ILE ALA SEQRES 7 B 326 PRO TYR ASP LEU VAL ARG VAL GLY ASP LEU GLY ASP ALA SEQRES 8 B 326 PRO VAL ASN PRO ILE ASP LEU LEU ASP SER LEU ARG ARG SEQRES 9 B 326 ILE GLU GLY PHE TYR ARG GLN VAL HIS ALA ALA GLY THR SEQRES 10 B 326 LEU PRO LEU SER VAL GLY GLY ASP HIS LEU VAL THR LEU SEQRES 11 B 326 PRO ILE PHE ARG ALA LEU GLY ARG GLU ARG PRO LEU GLY SEQRES 12 B 326 MET VAL HIS PHE ASP ALA HIS SER ASP THR ASN ASP ARG SEQRES 13 B 326 TYR PHE GLY ASP ASN PRO TYR THR HIS GLY THR PRO PHE SEQRES 14 B 326 ARG ARG ALA ILE GLU GLU GLY LEU LEU ASP PRO LEU ARG SEQRES 15 B 326 THR VAL GLN ILE GLY ILE ARG GLY SER VAL TYR SER PRO SEQRES 16 B 326 ASP ASP ASP ALA PHE ALA ARG GLU CYS GLY ILE ARG VAL SEQRES 17 B 326 ILE HIS MET GLU GLU PHE VAL GLU LEU GLY VAL GLU ALA SEQRES 18 B 326 THR LEU ALA GLU ALA ARG ARG VAL VAL GLY ALA GLY PRO SEQRES 19 B 326 THR TYR VAL SER PHE ASP VAL ASP VAL LEU ASP PRO ALA SEQRES 20 B 326 PHE ALA PRO GLY THR GLY THR PRO GLU ILE GLY GLY MET SEQRES 21 B 326 THR SER LEU GLN ALA GLN GLN LEU VAL ARG GLY LEU ARG SEQRES 22 B 326 GLY LEU ASP LEU VAL GLY ALA ASP VAL VAL GLU VAL SER SEQRES 23 B 326 PRO PRO PHE ASP VAL GLY GLY ALA THR ALA LEU VAL GLY SEQRES 24 B 326 ALA THR MET MET PHE GLU LEU LEU CYS LEU LEU ALA GLU SEQRES 25 B 326 SER ALA ALA ARG SER ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 26 B 326 HIS HET GOL A1205 6 HET MN A1601 1 HET MN A1602 1 HET MN B1603 1 HET MN B1604 1 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 MN 4(MN 2+) FORMUL 8 HOH *189(H2 O) HELIX 1 1 THR A 22 LEU A 26 5 5 HELIX 2 2 ASP A 31 LEU A 35 5 5 HELIX 3 3 GLY A 53 ARG A 55 5 3 HELIX 4 4 HIS A 56 SER A 65 1 10 HELIX 5 5 SER A 66 MET A 68 5 3 HELIX 6 6 ALA A 78 VAL A 83 1 6 HELIX 7 7 ASP A 97 ALA A 115 1 19 HELIX 8 8 ASP A 125 LEU A 127 5 3 HELIX 9 9 VAL A 128 GLY A 137 1 10 HELIX 10 10 THR A 167 GLU A 175 1 9 HELIX 11 11 ASP A 198 GLY A 205 1 8 HELIX 12 12 MET A 211 GLY A 231 1 21 HELIX 13 13 ASP A 242 LEU A 244 5 3 HELIX 14 14 THR A 261 GLY A 271 1 11 HELIX 15 15 SER A 286 ASP A 290 5 5 HELIX 16 16 GLY A 293 ALA A 318 1 26 HELIX 17 17 THR B 22 LEU B 26 5 5 HELIX 18 18 ASP B 31 LEU B 35 5 5 HELIX 19 19 GLY B 53 ARG B 55 5 3 HELIX 20 20 HIS B 56 SER B 65 1 10 HELIX 21 21 SER B 66 MET B 68 5 3 HELIX 22 22 ALA B 78 VAL B 83 1 6 HELIX 23 23 ASP B 97 ALA B 115 1 19 HELIX 24 24 ASP B 125 LEU B 127 5 3 HELIX 25 25 VAL B 128 GLY B 137 1 10 HELIX 26 26 THR B 167 GLU B 175 1 9 HELIX 27 27 ASP B 198 GLY B 205 1 8 HELIX 28 28 MET B 211 GLY B 218 1 8 HELIX 29 29 GLY B 218 GLY B 231 1 14 HELIX 30 30 ASP B 242 LEU B 244 5 3 HELIX 31 31 THR B 261 GLY B 271 1 11 HELIX 32 32 SER B 286 ASP B 290 5 5 HELIX 33 33 GLY B 293 ALA B 315 1 23 SHEET 1 A 8 VAL A 85 ASP A 90 0 SHEET 2 A 8 VAL A 37 VAL A 42 1 N LEU A 39 O GLY A 86 SHEET 3 A 8 LEU A 118 GLY A 123 1 O VAL A 122 N VAL A 42 SHEET 4 A 8 LEU A 277 VAL A 283 1 O ALA A 280 N SER A 121 SHEET 5 A 8 THR A 235 ASP A 240 1 N PHE A 239 O ASP A 281 SHEET 6 A 8 LEU A 142 PHE A 147 1 N PHE A 147 O ASP A 240 SHEET 7 A 8 LEU A 178 ILE A 188 1 O ASP A 179 N LEU A 142 SHEET 8 A 8 ARG A 207 HIS A 210 1 O ILE A 209 N GLN A 185 SHEET 1 B 8 VAL B 85 ASP B 90 0 SHEET 2 B 8 VAL B 37 VAL B 42 1 N GLY B 41 O GLY B 89 SHEET 3 B 8 LEU B 118 GLY B 123 1 O LEU B 120 N GLY B 38 SHEET 4 B 8 ASP B 276 VAL B 283 1 O VAL B 282 N GLY B 123 SHEET 5 B 8 PRO B 234 ASP B 240 1 N THR B 235 O ASP B 276 SHEET 6 B 8 LEU B 142 PHE B 147 1 N PHE B 147 O ASP B 240 SHEET 7 B 8 LEU B 178 ILE B 188 1 O VAL B 184 N HIS B 146 SHEET 8 B 8 ARG B 207 HIS B 210 1 O ILE B 209 N GLN B 185 LINK ND1 HIS A 126 MN MN A1601 1555 1555 2.22 LINK OD2 ASP A 148 MN MN A1601 1555 1555 2.21 LINK OD1 ASP A 148 MN MN A1602 1555 1555 2.09 LINK ND1 HIS A 150 MN MN A1602 1555 1555 2.41 LINK OD2 ASP A 152 MN MN A1601 1555 1555 2.19 LINK OD2 ASP A 240 MN MN A1601 1555 1555 2.17 LINK OD2 ASP A 240 MN MN A1602 1555 1555 2.30 LINK OD2 ASP A 242 MN MN A1602 1555 1555 2.26 LINK OD1 ASP A 242 MN MN A1602 1555 1555 2.50 LINK O HOH A 367 MN MN A1601 1555 1555 2.42 LINK O HOH A 367 MN MN A1602 1555 1555 2.23 LINK ND1 HIS B 126 MN MN B1603 1555 1555 2.21 LINK OD2 ASP B 148 MN MN B1603 1555 1555 2.16 LINK OD1 ASP B 148 MN MN B1604 1555 1555 2.23 LINK ND1 HIS B 150 MN MN B1604 1555 1555 2.32 LINK OD2 ASP B 152 MN MN B1603 1555 1555 2.15 LINK OD2 ASP B 240 MN MN B1603 1555 1555 2.21 LINK OD2 ASP B 240 MN MN B1604 1555 1555 2.31 LINK OD2 ASP B 242 MN MN B1604 1555 1555 2.31 LINK OD1 ASP B 242 MN MN B1604 1555 1555 2.52 LINK O HOH B 371 MN MN B1603 1555 1555 2.38 LINK O HOH B 371 MN MN B1604 1555 1555 2.17 CISPEP 1 GLY A 123 GLY A 124 0 6.06 CISPEP 2 GLY B 123 GLY B 124 0 2.98 SITE 1 AC1 9 ARG A 16 PHE A 17 ASN A 50 ARG A 51 SITE 2 AC1 9 ASN A 63 SER A 66 LEU A 67 HIS B 56 SITE 3 AC1 9 ARG B 59 SITE 1 AC2 6 HIS A 126 ASP A 148 ASP A 152 ASP A 240 SITE 2 AC2 6 HOH A 367 MN A1602 SITE 1 AC3 6 ASP A 148 HIS A 150 ASP A 240 ASP A 242 SITE 2 AC3 6 HOH A 367 MN A1601 SITE 1 AC4 6 HIS B 126 ASP B 148 ASP B 152 ASP B 240 SITE 2 AC4 6 HOH B 371 MN B1604 SITE 1 AC5 6 ASP B 148 HIS B 150 ASP B 240 ASP B 242 SITE 2 AC5 6 HOH B 371 MN B1603 CRYST1 123.961 123.961 123.961 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008067 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008067 0.00000