HEADER HORMONE RECEPTOR 16-JUN-10 3NJ0 TITLE X-RAY CRYSTAL STRUCTURE OF THE PYL2-PYRABACTIN A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PYR1-LIKE PROTEIN 2, REGULATORY COMPONENTS OF ABA RECEPTOR COMPND 5 14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COLUMBIA; SOURCE 6 GENE: AT2G26040, PYL2, RCAR14, T19L18.15; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS START, ABA, PYR/PYL/RCAR, PLANT HORMONE, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 3 GENOMICS, CESG, HORMONE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR F.C.PETERSON,E.S.BURGIE,C.A.BINGMAN,B.F.VOLKMAN,G.N.PHILLIPS JR., AUTHOR 2 S.R.CUTLER,D.R.JENSEN,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS AUTHOR 3 (CESG) REVDAT 6 21-FEB-24 3NJ0 1 REMARK SEQADV REVDAT 5 08-NOV-17 3NJ0 1 REMARK REVDAT 4 16-MAR-11 3NJ0 1 TITLE REVDAT 3 15-SEP-10 3NJ0 1 JRNL REVDAT 2 25-AUG-10 3NJ0 1 JRNL REVDAT 1 18-AUG-10 3NJ0 0 JRNL AUTH F.C.PETERSON,E.S.BURGIE,S.Y.PARK,D.R.JENSEN,J.J.WEINER, JRNL AUTH 2 C.A.BINGMAN,C.E.CHANG,S.R.CUTLER,G.N.PHILLIPS,B.F.VOLKMAN JRNL TITL STRUCTURAL BASIS FOR SELECTIVE ACTIVATION OF ABA RECEPTORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1109 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20729860 JRNL DOI 10.1038/NSMB.1898 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 46723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6636 - 4.5502 0.99 3573 152 0.1749 0.1814 REMARK 3 2 4.5502 - 3.6137 0.99 3422 143 0.1491 0.1422 REMARK 3 3 3.6137 - 3.1575 1.00 3437 146 0.1665 0.2183 REMARK 3 4 3.1575 - 2.8690 0.99 3401 142 0.1885 0.2195 REMARK 3 5 2.8690 - 2.6635 0.99 3379 144 0.1933 0.2406 REMARK 3 6 2.6635 - 2.5066 0.99 3360 139 0.1943 0.2009 REMARK 3 7 2.5066 - 2.3811 0.98 3336 131 0.1791 0.2185 REMARK 3 8 2.3811 - 2.2775 0.98 3309 134 0.1744 0.2369 REMARK 3 9 2.2775 - 2.1899 0.97 3262 137 0.1712 0.2237 REMARK 3 10 2.1899 - 2.1143 0.96 3261 134 0.1777 0.2279 REMARK 3 11 2.1143 - 2.0482 0.95 3204 141 0.1814 0.2371 REMARK 3 12 2.0482 - 1.9897 0.91 3057 135 0.1901 0.1978 REMARK 3 13 1.9897 - 1.9373 0.81 2727 125 0.2033 0.2541 REMARK 3 14 1.9373 - 1.8901 0.63 2096 96 0.2236 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 47.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.44310 REMARK 3 B22 (A**2) : -2.38810 REMARK 3 B33 (A**2) : 3.83120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4680 REMARK 3 ANGLE : 1.178 6370 REMARK 3 CHIRALITY : 0.082 712 REMARK 3 PLANARITY : 0.005 794 REMARK 3 DIHEDRAL : 20.299 1685 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4289 -28.1016 -10.1511 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1564 REMARK 3 T33: 0.1539 T12: -0.0202 REMARK 3 T13: 0.0253 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.7569 L22: 1.2744 REMARK 3 L33: 0.9487 L12: -0.0402 REMARK 3 L13: 0.3237 L23: 0.0290 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.0469 S13: 0.0292 REMARK 3 S21: -0.0652 S22: 0.0171 S23: -0.0596 REMARK 3 S31: 0.0274 S32: 0.0713 S33: -0.0364 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4136 -50.8639 -21.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.1453 REMARK 3 T33: 0.1878 T12: -0.0002 REMARK 3 T13: -0.0471 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.9241 L22: 1.7814 REMARK 3 L33: 1.1762 L12: -0.0908 REMARK 3 L13: -0.2042 L23: 0.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.0246 S13: -0.0745 REMARK 3 S21: 0.0652 S22: 0.0356 S23: 0.0145 REMARK 3 S31: 0.0277 S32: 0.0288 S33: -0.0670 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4832 -26.7157 -40.9782 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.1896 REMARK 3 T33: 0.1736 T12: 0.0521 REMARK 3 T13: -0.0609 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 1.6197 L22: 1.2868 REMARK 3 L33: 1.4045 L12: -0.4713 REMARK 3 L13: 0.0048 L23: -0.2020 REMARK 3 S TENSOR REMARK 3 S11: 0.1111 S12: 0.1239 S13: -0.0685 REMARK 3 S21: -0.1262 S22: 0.0080 S23: -0.0624 REMARK 3 S31: 0.0514 S32: 0.1260 S33: -0.1013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : 300 MM CCD REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION 2 UL- 20 MM TRIS, PH REMARK 280 7.5, PRECIPITANT SOLUTION 2 UL- 180 MM MAGNESIUM ACETATE, 16% (W/ REMARK 280 V) PEG_8000, 100 MM SODIUM CACODYLATE, PH 5.5, CRYOPROTECTANT- REMARK 280 20% (V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.61550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.61550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.27100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.57550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.27100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.57550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.61550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.27100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.57550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.61550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.27100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.57550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -62.54200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -93.61550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 PEG C 191 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 217 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 118 REMARK 465 HIS A 187 REMARK 465 ASP A 188 REMARK 465 ASP A 189 REMARK 465 GLU A 190 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 GLY B 117 REMARK 465 GLU B 118 REMARK 465 ASP B 188 REMARK 465 ASP B 189 REMARK 465 GLU B 190 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 PRO C 5 REMARK 465 ALA C 6 REMARK 465 VAL C 7 REMARK 465 LYS C 8 REMARK 465 GLY C 117 REMARK 465 GLU C 118 REMARK 465 ASP C 188 REMARK 465 ASP C 189 REMARK 465 GLU C 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 7 CG1 CG2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PYV A 300 O HOH A 285 1.80 REMARK 500 O1 PYV A 300 O HOH A 285 1.92 REMARK 500 O1 PYV A 300 O HOH A 285 1.98 REMARK 500 O1 PYV A 300 O HOH A 285 1.98 REMARK 500 N2 PYV A 300 O HOH A 284 2.16 REMARK 500 N2 PYV A 300 O HOH A 284 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 123.39 -173.88 REMARK 500 SER A 138 -26.33 -141.77 REMARK 500 SER A 183 -14.41 -141.29 REMARK 500 SER B 89 -158.04 -156.15 REMARK 500 SER B 183 -7.83 -151.37 REMARK 500 ASP C 31 121.40 -177.41 REMARK 500 SER C 89 -158.65 -153.39 REMARK 500 ASN C 135 88.19 -62.85 REMARK 500 SER C 183 0.75 -151.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG C 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 192 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NJ1 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF THE PY12(V114I)-PYRABACTIN A COMPLEX REMARK 900 RELATED ID: 3NJO RELATED DB: PDB REMARK 900 RELATED ID: GO.10139 RELATED DB: TARGETDB DBREF 3NJ0 A 1 190 UNP O80992 PYL2_ARATH 1 190 DBREF 3NJ0 B 1 190 UNP O80992 PYL2_ARATH 1 190 DBREF 3NJ0 C 1 190 UNP O80992 PYL2_ARATH 1 190 SEQADV 3NJ0 GLY A -2 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 SER A -1 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 HIS A 0 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 GLY B -2 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 SER B -1 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 HIS B 0 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 GLY C -2 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 SER C -1 UNP O80992 EXPRESSION TAG SEQADV 3NJ0 HIS C 0 UNP O80992 EXPRESSION TAG SEQRES 1 A 193 GLY SER HIS MET SER SER SER PRO ALA VAL LYS GLY LEU SEQRES 2 A 193 THR ASP GLU GLU GLN LYS THR LEU GLU PRO VAL ILE LYS SEQRES 3 A 193 THR TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SEQRES 4 A 193 SER LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL SEQRES 5 A 193 VAL TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG SEQRES 6 A 193 TYR LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY SEQRES 7 A 193 ASP GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SEQRES 8 A 193 SER GLY LEU PRO ALA SER THR SER THR GLU ARG LEU GLU SEQRES 9 A 193 PHE VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL SEQRES 10 A 193 VAL GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL SEQRES 11 A 193 THR SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS SEQRES 12 A 193 VAL TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE SEQRES 13 A 193 PRO GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL SEQRES 14 A 193 ASP THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL SEQRES 15 A 193 ALA ALA THR SER ALA PRO MET HIS ASP ASP GLU SEQRES 1 B 193 GLY SER HIS MET SER SER SER PRO ALA VAL LYS GLY LEU SEQRES 2 B 193 THR ASP GLU GLU GLN LYS THR LEU GLU PRO VAL ILE LYS SEQRES 3 B 193 THR TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SEQRES 4 B 193 SER LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL SEQRES 5 B 193 VAL TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG SEQRES 6 B 193 TYR LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY SEQRES 7 B 193 ASP GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SEQRES 8 B 193 SER GLY LEU PRO ALA SER THR SER THR GLU ARG LEU GLU SEQRES 9 B 193 PHE VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL SEQRES 10 B 193 VAL GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL SEQRES 11 B 193 THR SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS SEQRES 12 B 193 VAL TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE SEQRES 13 B 193 PRO GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL SEQRES 14 B 193 ASP THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL SEQRES 15 B 193 ALA ALA THR SER ALA PRO MET HIS ASP ASP GLU SEQRES 1 C 193 GLY SER HIS MET SER SER SER PRO ALA VAL LYS GLY LEU SEQRES 2 C 193 THR ASP GLU GLU GLN LYS THR LEU GLU PRO VAL ILE LYS SEQRES 3 C 193 THR TYR HIS GLN PHE GLU PRO ASP PRO THR THR CYS THR SEQRES 4 C 193 SER LEU ILE THR GLN ARG ILE HIS ALA PRO ALA SER VAL SEQRES 5 C 193 VAL TRP PRO LEU ILE ARG ARG PHE ASP ASN PRO GLU ARG SEQRES 6 C 193 TYR LYS HIS PHE VAL LYS ARG CYS ARG LEU ILE SER GLY SEQRES 7 C 193 ASP GLY ASP VAL GLY SER VAL ARG GLU VAL THR VAL ILE SEQRES 8 C 193 SER GLY LEU PRO ALA SER THR SER THR GLU ARG LEU GLU SEQRES 9 C 193 PHE VAL ASP ASP ASP HIS ARG VAL LEU SER PHE ARG VAL SEQRES 10 C 193 VAL GLY GLY GLU HIS ARG LEU LYS ASN TYR LYS SER VAL SEQRES 11 C 193 THR SER VAL ASN GLU PHE LEU ASN GLN ASP SER GLY LYS SEQRES 12 C 193 VAL TYR THR VAL VAL LEU GLU SER TYR THR VAL ASP ILE SEQRES 13 C 193 PRO GLU GLY ASN THR GLU GLU ASP THR LYS MET PHE VAL SEQRES 14 C 193 ASP THR VAL VAL LYS LEU ASN LEU GLN LYS LEU GLY VAL SEQRES 15 C 193 ALA ALA THR SER ALA PRO MET HIS ASP ASP GLU HET PYV A 300 86 HET PEG A 191 7 HET PYV B 300 86 HET PYV C 300 86 HET PEG C 191 7 HET GOL C 192 6 HETNAM PYV 4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN PYV PYRABACTIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 PYV 3(C16 H13 BR N2 O2 S) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *314(H2 O) HELIX 1 1 THR A 11 HIS A 26 1 16 HELIX 2 2 PRO A 46 ARG A 56 1 11 HELIX 3 3 ASN A 59 TYR A 63 5 5 HELIX 4 4 THR A 158 ALA A 184 1 27 HELIX 5 5 THR B 11 HIS B 26 1 16 HELIX 6 6 PRO B 46 ARG B 56 1 11 HELIX 7 7 ASN B 59 TYR B 63 5 5 HELIX 8 8 THR B 158 ALA B 184 1 27 HELIX 9 9 THR C 11 HIS C 26 1 16 HELIX 10 10 PRO C 46 ARG C 56 1 11 HELIX 11 11 ASN C 59 TYR C 63 5 5 HELIX 12 12 THR C 158 ALA C 184 1 27 SHEET 1 A 7 THR A 34 ILE A 43 0 SHEET 2 A 7 VAL A 141 ASP A 152 -1 O THR A 143 N ILE A 43 SHEET 3 A 7 LYS A 125 LEU A 134 -1 N ASN A 131 O VAL A 144 SHEET 4 A 7 VAL A 109 GLY A 116 -1 N LEU A 110 O THR A 128 SHEET 5 A 7 SER A 94 ASP A 104 -1 N THR A 97 O VAL A 115 SHEET 6 A 7 VAL A 82 VAL A 87 -1 N VAL A 85 O SER A 96 SHEET 7 A 7 VAL A 67 SER A 74 -1 N ARG A 71 O GLU A 84 SHEET 1 B 7 THR B 34 ILE B 43 0 SHEET 2 B 7 VAL B 141 ASP B 152 -1 O THR B 143 N ILE B 43 SHEET 3 B 7 LYS B 125 LEU B 134 -1 N ASN B 131 O VAL B 144 SHEET 4 B 7 VAL B 109 GLY B 116 -1 N LEU B 110 O THR B 128 SHEET 5 B 7 SER B 94 ASP B 104 -1 N THR B 97 O VAL B 115 SHEET 6 B 7 VAL B 82 VAL B 87 -1 N VAL B 85 O SER B 96 SHEET 7 B 7 VAL B 67 SER B 74 -1 N LYS B 68 O THR B 86 SHEET 1 C 7 THR C 34 ILE C 43 0 SHEET 2 C 7 VAL C 141 ASP C 152 -1 O THR C 143 N ILE C 43 SHEET 3 C 7 LYS C 125 LEU C 134 -1 N ASN C 131 O VAL C 144 SHEET 4 C 7 VAL C 109 GLY C 116 -1 N LEU C 110 O THR C 128 SHEET 5 C 7 SER C 94 ASP C 104 -1 N THR C 97 O VAL C 115 SHEET 6 C 7 VAL C 82 VAL C 87 -1 N VAL C 85 O SER C 96 SHEET 7 C 7 VAL C 67 SER C 74 -1 N ARG C 71 O GLU C 84 SITE 1 AC1 13 LYS A 64 GLU A 98 PHE A 112 VAL A 114 SITE 2 AC1 13 LEU A 121 TYR A 124 PHE A 165 VAL A 169 SITE 3 AC1 13 ASN A 173 PEG A 191 HOH A 214 HOH A 284 SITE 4 AC1 13 HOH A 285 SITE 1 AC2 5 PHE A 66 PYV A 300 SER B 89 PHE B 165 SITE 2 AC2 5 PYV B 300 SITE 1 AC3 13 PEG A 191 LYS B 64 VAL B 87 GLU B 98 SITE 2 AC3 13 PHE B 112 VAL B 114 LEU B 121 TYR B 124 SITE 3 AC3 13 PHE B 165 VAL B 169 ASN B 173 HOH B 209 SITE 4 AC3 13 HOH B 229 SITE 1 AC4 15 LYS C 64 VAL C 87 GLU C 98 PHE C 112 SITE 2 AC4 15 VAL C 114 LEU C 121 TYR C 124 PHE C 165 SITE 3 AC4 15 VAL C 166 VAL C 169 PEG C 191 GOL C 192 SITE 4 AC4 15 HOH C 278 HOH C 279 HOH C 291 SITE 1 AC5 4 PHE C 66 PHE C 165 GOL C 192 PYV C 300 SITE 1 AC6 6 GLY C 90 HIS C 119 ARG C 120 LEU C 121 SITE 2 AC6 6 PEG C 191 PYV C 300 CRYST1 62.542 105.151 187.231 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015989 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005341 0.00000