HEADER VIRAL PROTEIN/INHIBITOR 17-JUN-10 3NJQ TITLE CRYSTAL STRUCTURE OF KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS PROTEASE TITLE 2 IN COMPLEX WITH DIMER DISRUPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 17; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-215; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ORF 17; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 23-215; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 TYPE M; SOURCE 3 ORGANISM_TAXID: 435895; SOURCE 4 GENE: RHADINOVIRUS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 TYPE M; SOURCE 12 ORGANISM_TAXID: 435895; SOURCE 13 GENE: RHADINOVIRUS; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3)PLYSS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS PROTEIN-DIMER DISRUPTOR COMPLEX, KSHV, KSHV PROTEASE, HERPESVIRUS KEYWDS 2 PROTEASE, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BAHARUDDIN REVDAT 3 08-NOV-17 3NJQ 1 REMARK REVDAT 2 31-AUG-11 3NJQ 1 JRNL REVDAT 1 17-AUG-11 3NJQ 0 JRNL AUTH G.M.LEE,T.SHAHIAN,A.BAHARUDDIN,J.E.GABLE,C.S.CRAIK JRNL TITL ENZYME INHIBITION BY ALLOSTERIC CAPTURE OF AN INACTIVE JRNL TITL 2 CONFORMATION. JRNL REF J.MOL.BIOL. V. 411 999 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21723875 JRNL DOI 10.1016/J.JMB.2011.06.032 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3171 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4343 ; 1.979 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ;19.900 ; 5.153 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;30.996 ;23.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;16.807 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.407 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2391 ; 0.009 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3135 ; 1.575 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1253 ; 2.440 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1203 ; 3.539 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6742 -8.8851 -35.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.0862 REMARK 3 T33: 0.1893 T12: -0.0395 REMARK 3 T13: -0.0814 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.5236 L22: 2.0494 REMARK 3 L33: 8.0391 L12: 0.1681 REMARK 3 L13: 1.7905 L23: 0.6673 REMARK 3 S TENSOR REMARK 3 S11: -0.2368 S12: -0.0090 S13: 0.1592 REMARK 3 S21: 0.2422 S22: 0.0851 S23: -0.2558 REMARK 3 S31: -0.9022 S32: 0.4898 S33: 0.1517 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1955 -24.0641 -9.4674 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0468 REMARK 3 T33: 0.0749 T12: 0.0326 REMARK 3 T13: -0.0290 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.5984 L22: 3.1063 REMARK 3 L33: 3.7643 L12: -0.7810 REMARK 3 L13: -0.4386 L23: 0.3137 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.0126 S13: 0.0932 REMARK 3 S21: -0.0152 S22: 0.0030 S23: 0.1101 REMARK 3 S31: -0.3200 S32: -0.3286 S33: 0.0611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3NJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.05M CACO, 2M (NH4)2SO4, REMARK 280 0.1M UREA, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.65850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.99700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.62200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.65850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.99700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.62200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.65850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.99700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.62200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.65850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.99700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.62200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 34.65850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -47.99700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -59.62200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -95.99400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -95.99400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -278.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -95.99400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -95.99400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 34.65850 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 -47.99700 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 59.62200 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 -34.65850 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -47.99700 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 59.62200 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 -34.65850 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 -47.99700 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 -59.62200 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 34.65850 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 -47.99700 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 -59.62200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 194 REMARK 465 THR A 195 REMARK 465 LEU A 196 REMARK 465 LEU B 123 REMARK 465 SER B 124 REMARK 465 GLN B 125 REMARK 465 THR B 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 48 O HOH A 209 2.02 REMARK 500 O HOH B 224 O HOH B 245 2.07 REMARK 500 O PRO B 48 O HOH B 251 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 138 CB CYS A 138 SG 0.117 REMARK 500 GLU A 168 CD GLU A 168 OE2 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 LEU B 58 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 31 -53.02 -29.06 REMARK 500 GLN A 125 36.39 -143.74 REMARK 500 THR A 126 99.89 57.07 REMARK 500 LEU B 19 -77.04 84.95 REMARK 500 HIS B 46 19.29 56.78 REMARK 500 GLU B 49 -20.63 89.13 REMARK 500 SER B 62 -100.03 28.41 REMARK 500 PRO B 98 -160.14 -78.57 REMARK 500 LYS B 99 72.07 -151.93 REMARK 500 GLU B 100 32.47 74.26 REMARK 500 PRO B 120 -37.39 -32.69 REMARK 500 SER B 128 -153.73 -87.90 REMARK 500 SER B 128 -152.44 -89.59 REMARK 500 ARG B 160 9.38 -66.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 144 GLY A 145 41.32 REMARK 500 LYS B 99 GLU B 100 -48.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NJQ A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NJQ B 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NJQ B 199 DBREF 3NJQ A 4 196 UNP P88911 P88911_HHV8 23 215 DBREF 3NJQ B 4 196 UNP P88911 P88911_HHV8 23 215 SEQRES 1 A 193 GLY LEU TYR VAL GLY GLY PHE VAL ASP VAL VAL SER CSO SEQRES 2 A 193 PRO LYS LEU GLU GLN GLU LEU TYR LEU ASP PRO ASP GLN SEQRES 3 A 193 VAL THR ASP TYR LEU PRO VAL THR GLU PRO LEU PRO ILE SEQRES 4 A 193 THR ILE GLU HIS LEU PRO GLU THR GLU VAL GLY TRP THR SEQRES 5 A 193 LEU GLY LEU PHE GLN VAL SER HIS GLY ILE PHE CYS THR SEQRES 6 A 193 GLY ALA ILE THR SER PRO ALA PHE LEU GLU LEU ALA SER SEQRES 7 A 193 ARG LEU ALA ASP THR SER HIS VAL ALA ARG ALA PRO VAL SEQRES 8 A 193 LYS ASN LEU PRO LYS GLU PRO LEU LEU GLU ILE LEU HIS SEQRES 9 A 193 THR TRP LEU PRO GLY LEU SER LEU SER SER ILE HIS PRO SEQRES 10 A 193 ARG GLU LEU SER GLN THR PRO SER GLY PRO VAL PHE GLN SEQRES 11 A 193 HIS VAL SER LEU CYS ALA LEU GLY ARG ARG ARG GLY THR SEQRES 12 A 193 VAL ALA VAL TYR GLY HIS ASP ALA GLU TRP VAL VAL SER SEQRES 13 A 193 ARG PHE SER SER VAL SER LYS SER GLU ARG ALA HIS ILE SEQRES 14 A 193 LEU GLN HIS VAL SER SER CYS ARG LEU GLU ASP LEU SER SEQRES 15 A 193 THR PRO ASN PHE VAL SER PRO LEU GLU THR LEU SEQRES 1 B 193 GLY LEU TYR VAL GLY GLY PHE VAL ASP VAL VAL SER CSO SEQRES 2 B 193 PRO LYS LEU GLU GLN GLU LEU TYR LEU ASP PRO ASP GLN SEQRES 3 B 193 VAL THR ASP TYR LEU PRO VAL THR GLU PRO LEU PRO ILE SEQRES 4 B 193 THR ILE GLU HIS LEU PRO GLU THR GLU VAL GLY TRP THR SEQRES 5 B 193 LEU GLY LEU PHE GLN VAL SER HIS GLY ILE PHE CYS THR SEQRES 6 B 193 GLY ALA ILE THR SER PRO ALA PHE LEU GLU LEU ALA SER SEQRES 7 B 193 ARG LEU ALA ASP THR SER HIS VAL ALA ARG ALA PRO VAL SEQRES 8 B 193 LYS ASN LEU PRO LYS GLU PRO LEU LEU GLU ILE LEU HIS SEQRES 9 B 193 THR TRP LEU PRO GLY LEU SER LEU SER SER ILE HIS PRO SEQRES 10 B 193 ARG GLU LEU SER GLN THR PRO SER GLY PRO VAL PHE GLN SEQRES 11 B 193 HIS VAL SER LEU CYS ALA LEU GLY ARG ARG ARG GLY THR SEQRES 12 B 193 VAL ALA VAL TYR GLY HIS ASP ALA GLU TRP VAL VAL SER SEQRES 13 B 193 ARG PHE SER SER VAL SER LYS SER GLU ARG ALA HIS ILE SEQRES 14 B 193 LEU GLN HIS VAL SER SER CSO ARG LEU GLU ASP LEU SER SEQRES 15 B 193 THR PRO ASN PHE VAL SER PRO LEU GLU THR LEU MODRES 3NJQ CSO A 16 CYS S-HYDROXYCYSTEINE MODRES 3NJQ CSO B 16 CYS S-HYDROXYCYSTEINE MODRES 3NJQ CSO B 179 CYS S-HYDROXYCYSTEINE HET CSO A 16 7 HET CSO B 16 7 HET CSO B 179 7 HET ACT A 1 4 HET NJQ A 197 32 HET SO4 B 1 5 HET SO4 B 2 5 HET SO4 B 3 10 HET GOL B 197 6 HET NJQ B 198 32 HET NJQ B 199 32 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ACT ACETATE ION HETNAM NJQ 3-BENZYL-4-({[6-(CYCLOHEXYLMETHYL)PYRIDIN-2- HETNAM 2 NJQ YL]CARBONYL}AMINO)BENZOIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO 3(C3 H7 N O3 S) FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 NJQ 3(C27 H28 N2 O3) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 11 HOH *107(H2 O) HELIX 1 1 ASP A 26 LEU A 34 5 9 HELIX 2 2 SER A 73 SER A 87 1 15 HELIX 3 3 SER A 87 ALA A 92 1 6 HELIX 4 4 GLU A 100 LEU A 110 1 11 HELIX 5 5 HIS A 119 SER A 124 1 6 HELIX 6 6 ASP A 153 SER A 159 1 7 HELIX 7 7 SER A 165 SER A 177 1 13 HELIX 8 8 ASP B 26 LEU B 34 5 9 HELIX 9 9 SER B 73 SER B 87 1 15 HELIX 10 10 SER B 87 ALA B 92 1 6 HELIX 11 11 PRO B 101 LEU B 110 1 10 HELIX 12 12 ASP B 153 ARG B 160 1 8 HELIX 13 13 SER B 165 SER B 178 1 14 HELIX 14 14 CSO B 179 LEU B 184 5 6 HELIX 15 15 SER B 191 LEU B 196 5 6 SHEET 1 A 9 LEU A 23 LEU A 25 0 SHEET 2 A 9 ASP A 12 SER A 15 -1 N SER A 15 O LEU A 23 SHEET 3 A 9 GLY A 112 SER A 117 1 O LEU A 115 N ASP A 12 SHEET 4 A 9 PHE A 132 CYS A 138 -1 O CYS A 138 N GLY A 112 SHEET 5 A 9 PRO A 41 ILE A 44 1 N THR A 43 O LEU A 137 SHEET 6 A 9 GLY A 53 VAL A 61 -1 O GLY A 53 N ILE A 42 SHEET 7 A 9 GLY A 64 ILE A 71 -1 O GLY A 64 N VAL A 61 SHEET 8 A 9 LEU A 5 PHE A 10 -1 N VAL A 7 O GLY A 69 SHEET 9 A 9 VAL A 149 GLY A 151 -1 O GLY A 151 N TYR A 6 SHEET 1 B 9 LEU B 23 LEU B 25 0 SHEET 2 B 9 ASP B 12 SER B 15 -1 N SER B 15 O LEU B 23 SHEET 3 B 9 GLY B 112 SER B 117 1 O LEU B 115 N ASP B 12 SHEET 4 B 9 PHE B 132 CYS B 138 -1 O CYS B 138 N GLY B 112 SHEET 5 B 9 PRO B 41 ILE B 44 1 N THR B 43 O LEU B 137 SHEET 6 B 9 GLY B 53 VAL B 61 -1 O GLY B 53 N ILE B 42 SHEET 7 B 9 GLY B 64 ILE B 71 -1 O THR B 68 N LEU B 56 SHEET 8 B 9 LEU B 5 PHE B 10 -1 N LEU B 5 O ILE B 71 SHEET 9 B 9 VAL B 149 GLY B 151 -1 O GLY B 151 N TYR B 6 LINK C SER A 15 N CSO A 16 1555 1555 1.34 LINK C CSO A 16 N PRO A 17 1555 1555 1.35 LINK C SER B 15 N CSO B 16 1555 1555 1.33 LINK C CSO B 16 N PRO B 17 1555 1555 1.34 LINK C SER B 178 N CSO B 179 1555 1555 1.34 LINK C CSO B 179 N ARG B 180 1555 1555 1.33 CISPEP 1 LEU A 34 PRO A 35 0 -0.20 CISPEP 2 LEU B 34 PRO B 35 0 -10.55 CISPEP 3 LYS B 95 ASN B 96 0 -18.94 SITE 1 AC1 5 GLU A 100 LEU A 103 GLY A 151 HIS A 152 SITE 2 AC1 5 TRP A 156 SITE 1 AC2 13 PHE A 76 LEU A 79 ILE A 105 TRP A 109 SITE 2 AC2 13 PHE A 189 PRO A 192 HOH A 219 LEU B 47 SITE 3 AC2 13 THR B 195 LEU B 196 NJQ B 198 NJQ B 199 SITE 4 AC2 13 HOH B 206 SITE 1 AC3 3 HIS B 88 ARG B 91 HOH B 254 SITE 1 AC4 5 VAL A 89 ALA A 92 THR B 108 TRP B 109 SITE 2 AC4 5 ARG B 143 SITE 1 AC5 4 LYS A 99 HOH A 229 TRP B 156 ARG B 160 SITE 1 AC6 5 GLN A 133 HOH A 223 LEU B 184 SER B 185 SITE 2 AC6 5 HOH B 256 SITE 1 AC7 16 LYS A 18 TRP A 109 ALA A 139 NJQ A 197 SITE 2 AC7 16 LEU B 79 LEU B 83 VAL B 89 ALA B 90 SITE 3 AC7 16 ILE B 105 LEU B 106 TRP B 109 SER B 191 SITE 4 AC7 16 PRO B 192 LEU B 193 NJQ B 199 HOH B 252 SITE 1 AC8 13 LEU A 83 SER A 87 VAL A 89 TRP A 109 SITE 2 AC8 13 LEU A 193 NJQ A 197 GLU B 45 LEU B 47 SITE 3 AC8 13 LEU B 140 ARG B 144 NJQ B 198 HOH B 228 SITE 4 AC8 13 HOH B 244 CRYST1 69.317 95.994 119.244 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014426 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008386 0.00000