HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-JUN-10 3NKZ TITLE THE CRYSTAL STRUCTURE OF A FLAGELLA PROTEIN FROM YERSINIA TITLE 2 ENTEROCOLITICA SUBSP. ENTEROCOLITICA 8081 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR PROTEIN FLIT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA SUBSP. ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 393305; SOURCE 4 STRAIN: 8081; SOURCE 5 GENE: FLIT, YE2526; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19B KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MCSG, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,H.LI,B.FELDMANN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 20-NOV-24 3NKZ 1 REMARK LINK REVDAT 1 18-AUG-10 3NKZ 0 JRNL AUTH K.TAN,H.LI,B.FELDMANN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A FLAGELLA PROTEIN FROM YERSINIA JRNL TITL 2 ENTEROCOLITICA SUBSP. ENTEROCOLITICA 8081 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 33376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0508 - 4.6943 0.92 3212 175 0.1382 0.1685 REMARK 3 2 4.6943 - 3.7282 0.95 3168 151 0.1097 0.1321 REMARK 3 3 3.7282 - 3.2576 0.94 3090 154 0.1351 0.1714 REMARK 3 4 3.2576 - 2.9601 0.91 2980 160 0.1658 0.2217 REMARK 3 5 2.9601 - 2.7480 0.88 2883 163 0.1898 0.2225 REMARK 3 6 2.7480 - 2.5861 0.88 2869 150 0.1887 0.2142 REMARK 3 7 2.5861 - 2.4567 0.87 2797 153 0.1993 0.2332 REMARK 3 8 2.4567 - 2.3498 0.86 2765 146 0.2126 0.2235 REMARK 3 9 2.3498 - 2.2593 0.84 2737 143 0.2124 0.2460 REMARK 3 10 2.2593 - 2.1814 0.82 2639 129 0.2267 0.2852 REMARK 3 11 2.1814 - 2.1132 0.80 2565 128 0.2508 0.3115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 49.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.37130 REMARK 3 B22 (A**2) : 1.40200 REMARK 3 B33 (A**2) : 5.96930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3172 REMARK 3 ANGLE : 1.051 4275 REMARK 3 CHIRALITY : 0.059 526 REMARK 3 PLANARITY : 0.003 531 REMARK 3 DIHEDRAL : 19.281 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -6.7335 -9.1367 34.1973 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.0337 REMARK 3 T33: 0.3001 T12: 0.0398 REMARK 3 T13: 0.0576 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.3890 L22: 0.1007 REMARK 3 L33: 0.3368 L12: 0.1142 REMARK 3 L13: -0.1278 L23: 0.0906 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: -0.0251 S13: 0.0068 REMARK 3 S21: -0.0630 S22: 0.1649 S23: 0.2819 REMARK 3 S31: -0.0624 S32: 0.0021 S33: -0.0421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 1.5042 -13.1251 40.5672 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.0547 REMARK 3 T33: 0.2345 T12: 0.0610 REMARK 3 T13: -0.0061 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.3779 L22: 1.1992 REMARK 3 L33: 0.5077 L12: 0.0325 REMARK 3 L13: -0.2043 L23: -0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.1677 S12: -0.1481 S13: -0.0708 REMARK 3 S21: 0.2998 S22: 0.2018 S23: -0.3383 REMARK 3 S31: 0.1095 S32: 0.0671 S33: -0.0089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 9.0917 -23.0372 -0.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.1906 REMARK 3 T33: 0.3280 T12: 0.0164 REMARK 3 T13: -0.0037 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 0.3132 L22: 0.2792 REMARK 3 L33: 0.1774 L12: 0.1719 REMARK 3 L13: 0.0094 L23: -0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: 0.0409 S13: -0.1737 REMARK 3 S21: 0.0692 S22: -0.0683 S23: 0.0305 REMARK 3 S31: 0.0612 S32: 0.0043 S33: -0.0499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 5.3466 -14.6539 -6.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.2226 REMARK 3 T33: 0.2255 T12: 0.0356 REMARK 3 T13: -0.0189 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.5753 L22: 0.5255 REMARK 3 L33: 0.1381 L12: 0.1520 REMARK 3 L13: 0.0912 L23: -0.2090 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: 0.3157 S13: 0.1507 REMARK 3 S21: -0.0105 S22: -0.0562 S23: 0.0306 REMARK 3 S31: 0.0716 S32: 0.0199 S33: -0.0593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34714 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.112 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M AMMONIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 1% W/V PEG3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.39900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.82450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.37900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.82450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.39900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.37900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B, C AND D LIKELY REMARK 300 FORM DIMERS, RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 95 REMARK 465 SER A 96 REMARK 465 THR A 97 REMARK 465 LYS A 98 REMARK 465 GLN A 99 REMARK 465 GLN A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 ASN A 103 REMARK 465 ASN A 104 REMARK 465 THR A 105 REMARK 465 TYR A 106 REMARK 465 GLY A 107 REMARK 465 GLN A 108 REMARK 465 PHE A 109 REMARK 465 PRO A 110 REMARK 465 ASP A 111 REMARK 465 HIS A 112 REMARK 465 ALA A 113 REMARK 465 LEU A 114 REMARK 465 LEU A 115 REMARK 465 LEU A 116 REMARK 465 GLY A 117 REMARK 465 GLU A 118 REMARK 465 THR A 119 REMARK 465 GLN A 120 REMARK 465 GLN B 95 REMARK 465 SER B 96 REMARK 465 THR B 97 REMARK 465 LYS B 98 REMARK 465 GLN B 99 REMARK 465 GLN B 100 REMARK 465 ALA B 101 REMARK 465 VAL B 102 REMARK 465 ASN B 103 REMARK 465 ASN B 104 REMARK 465 THR B 105 REMARK 465 TYR B 106 REMARK 465 GLY B 107 REMARK 465 GLN B 108 REMARK 465 PHE B 109 REMARK 465 PRO B 110 REMARK 465 ASP B 111 REMARK 465 HIS B 112 REMARK 465 ALA B 113 REMARK 465 LEU B 114 REMARK 465 LEU B 115 REMARK 465 LEU B 116 REMARK 465 GLY B 117 REMARK 465 GLU B 118 REMARK 465 THR B 119 REMARK 465 GLN B 120 REMARK 465 VAL C 93 REMARK 465 GLY C 94 REMARK 465 GLN C 95 REMARK 465 SER C 96 REMARK 465 THR C 97 REMARK 465 LYS C 98 REMARK 465 GLN C 99 REMARK 465 GLN C 100 REMARK 465 ALA C 101 REMARK 465 VAL C 102 REMARK 465 ASN C 103 REMARK 465 ASN C 104 REMARK 465 THR C 105 REMARK 465 TYR C 106 REMARK 465 GLY C 107 REMARK 465 GLN C 108 REMARK 465 PHE C 109 REMARK 465 PRO C 110 REMARK 465 ASP C 111 REMARK 465 HIS C 112 REMARK 465 ALA C 113 REMARK 465 LEU C 114 REMARK 465 LEU C 115 REMARK 465 LEU C 116 REMARK 465 GLY C 117 REMARK 465 GLU C 118 REMARK 465 THR C 119 REMARK 465 GLN C 120 REMARK 465 GLY D 94 REMARK 465 GLN D 95 REMARK 465 SER D 96 REMARK 465 THR D 97 REMARK 465 LYS D 98 REMARK 465 GLN D 99 REMARK 465 GLN D 100 REMARK 465 ALA D 101 REMARK 465 VAL D 102 REMARK 465 ASN D 103 REMARK 465 ASN D 104 REMARK 465 THR D 105 REMARK 465 TYR D 106 REMARK 465 GLY D 107 REMARK 465 GLN D 108 REMARK 465 PHE D 109 REMARK 465 PRO D 110 REMARK 465 ASP D 111 REMARK 465 HIS D 112 REMARK 465 ALA D 113 REMARK 465 LEU D 114 REMARK 465 LEU D 115 REMARK 465 LEU D 116 REMARK 465 GLY D 117 REMARK 465 GLU D 118 REMARK 465 THR D 119 REMARK 465 GLN D 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 27 76.54 -161.14 REMARK 500 LEU A 86 -71.32 -54.36 REMARK 500 ARG A 88 -73.31 -65.04 REMARK 500 LEU A 92 -75.38 -42.68 REMARK 500 VAL A 93 -80.49 -49.12 REMARK 500 ASN B 29 62.16 -112.81 REMARK 500 ALA B 32 2.87 -60.25 REMARK 500 SER B 90 2.07 -61.72 REMARK 500 LEU B 92 -39.23 -36.06 REMARK 500 VAL B 93 -91.20 -67.42 REMARK 500 TRP D 30 7.23 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC38725 RELATED DB: TARGETDB DBREF 3NKZ A 1 120 UNP A1JSR8 FLIT_YERE8 1 120 DBREF 3NKZ B 1 120 UNP A1JSR8 FLIT_YERE8 1 120 DBREF 3NKZ C 1 120 UNP A1JSR8 FLIT_YERE8 1 120 DBREF 3NKZ D 1 120 UNP A1JSR8 FLIT_YERE8 1 120 SEQADV 3NKZ SER A -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN A -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA A 0 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ SER B -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN B -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA B 0 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ SER C -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN C -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA C 0 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ SER D -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN D -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA D 0 UNP A1JSR8 EXPRESSION TAG SEQRES 1 A 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 A 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 A 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 A 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 A 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 A 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 A 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 A 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 A 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 A 123 LEU LEU GLY GLU THR GLN SEQRES 1 B 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 B 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 B 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 B 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 B 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 B 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 B 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 B 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 B 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 B 123 LEU LEU GLY GLU THR GLN SEQRES 1 C 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 C 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 C 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 C 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 C 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 C 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 C 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 C 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 C 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 C 123 LEU LEU GLY GLU THR GLN SEQRES 1 D 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 D 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 D 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 D 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 D 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 D 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 D 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 D 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 D 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 D 123 LEU LEU GLY GLU THR GLN MODRES 3NKZ MSE A 1 MET SELENOMETHIONINE MODRES 3NKZ MSE A 21 MET SELENOMETHIONINE MODRES 3NKZ MSE A 38 MET SELENOMETHIONINE MODRES 3NKZ MSE A 59 MET SELENOMETHIONINE MODRES 3NKZ MSE B 1 MET SELENOMETHIONINE MODRES 3NKZ MSE B 21 MET SELENOMETHIONINE MODRES 3NKZ MSE B 38 MET SELENOMETHIONINE MODRES 3NKZ MSE B 59 MET SELENOMETHIONINE MODRES 3NKZ MSE C 1 MET SELENOMETHIONINE MODRES 3NKZ MSE C 21 MET SELENOMETHIONINE MODRES 3NKZ MSE C 38 MET SELENOMETHIONINE MODRES 3NKZ MSE C 59 MET SELENOMETHIONINE MODRES 3NKZ MSE D 1 MET SELENOMETHIONINE MODRES 3NKZ MSE D 21 MET SELENOMETHIONINE MODRES 3NKZ MSE D 38 MET SELENOMETHIONINE MODRES 3NKZ MSE D 59 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 21 8 HET MSE A 38 13 HET MSE A 59 8 HET MSE B 1 13 HET MSE B 21 8 HET MSE B 38 8 HET MSE B 59 8 HET MSE C 1 8 HET MSE C 21 8 HET MSE C 38 8 HET MSE C 59 8 HET MSE D 1 8 HET MSE D 21 8 HET MSE D 38 8 HET MSE D 59 8 HET SO4 A 121 5 HET PG4 A 122 13 HET SO4 B 121 5 HET SO4 C 121 5 HET PG4 C 122 13 HET SO4 D 121 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 11 HOH *87(H2 O) HELIX 1 1 ASN A -1 THR A 26 1 28 HELIX 2 2 ASP A 31 SER A 54 1 24 HELIX 3 3 SER A 57 GLY A 94 1 38 HELIX 4 4 SER B -2 GLU B 27 1 30 HELIX 5 5 TRP B 30 SER B 54 1 25 HELIX 6 6 SER B 57 VAL B 93 1 37 HELIX 7 7 SER C -2 GLU C 27 1 30 HELIX 8 8 ASN C 29 SER C 54 1 26 HELIX 9 9 SER C 57 ASP C 91 1 35 HELIX 10 10 SER D -2 GLU D 27 1 30 HELIX 11 11 ASP D 31 SER D 54 1 24 HELIX 12 12 SER D 57 VAL D 93 1 37 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C GLN A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N LEU A 22 1555 1555 1.33 LINK C GLU A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N THR A 39 1555 1555 1.33 LINK C LEU A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N LEU A 60 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C GLN B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N LEU B 22 1555 1555 1.33 LINK C GLU B 37 N MSE B 38 1555 1555 1.32 LINK C MSE B 38 N THR B 39 1555 1555 1.33 LINK C LEU B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N LEU B 60 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N GLU C 2 1555 1555 1.33 LINK C GLN C 20 N MSE C 21 1555 1555 1.34 LINK C MSE C 21 N LEU C 22 1555 1555 1.32 LINK C GLU C 37 N MSE C 38 1555 1555 1.32 LINK C MSE C 38 N THR C 39 1555 1555 1.33 LINK C LEU C 58 N MSE C 59 1555 1555 1.32 LINK C MSE C 59 N LEU C 60 1555 1555 1.33 LINK C ALA D 0 N MSE D 1 1555 1555 1.33 LINK C MSE D 1 N GLU D 2 1555 1555 1.33 LINK C GLN D 20 N MSE D 21 1555 1555 1.33 LINK C MSE D 21 N LEU D 22 1555 1555 1.32 LINK C GLU D 37 N MSE D 38 1555 1555 1.33 LINK C MSE D 38 N THR D 39 1555 1555 1.33 LINK C LEU D 58 N MSE D 59 1555 1555 1.33 LINK C MSE D 59 N LEU D 60 1555 1555 1.32 SITE 1 AC1 6 ARG A 3 HIS A 4 HOH A 127 CYS B 55 SITE 2 AC1 6 SER B 56 ARG C 3 SITE 1 AC2 6 ILE A 14 THR A 47 ALA A 48 ILE A 71 SITE 2 AC2 6 TYR B 11 ILE B 71 SITE 1 AC3 4 SER A 54 SER A 56 ARG B 3 HIS B 4 SITE 1 AC4 7 ARG A 3 ARG C 3 HIS C 4 HOH C 134 SITE 2 AC4 7 SER D 54 CYS D 55 SER D 56 SITE 1 AC5 5 TYR C 40 VAL D 44 THR D 47 ALA D 48 SITE 2 AC5 5 GLU D 75 SITE 1 AC6 6 SER A -2 SER C 54 CYS C 55 SER C 56 SITE 2 AC6 6 ARG D 3 HIS D 4 CRYST1 66.798 66.758 137.649 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007265 0.00000