HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-JUN-10 3NKZ TITLE THE CRYSTAL STRUCTURE OF A FLAGELLA PROTEIN FROM YERSINIA TITLE 2 ENTEROCOLITICA SUBSP. ENTEROCOLITICA 8081 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR PROTEIN FLIT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA SUBSP. ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 393305; SOURCE 4 STRAIN: 8081; SOURCE 5 GENE: FLIT, YE2526; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19B KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MCSG, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,H.LI,B.FELDMANN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 20-NOV-24 3NKZ 1 REMARK LINK REVDAT 1 18-AUG-10 3NKZ 0 JRNL AUTH K.TAN,H.LI,B.FELDMANN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A FLAGELLA PROTEIN FROM YERSINIA JRNL TITL 2 ENTEROCOLITICA SUBSP. ENTEROCOLITICA 8081 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 33376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0508 - 4.6943 0.92 3212 175 0.1382 0.1685 REMARK 3 2 4.6943 - 3.7282 0.95 3168 151 0.1097 0.1321 REMARK 3 3 3.7282 - 3.2576 0.94 3090 154 0.1351 0.1714 REMARK 3 4 3.2576 - 2.9601 0.91 2980 160 0.1658 0.2217 REMARK 3 5 2.9601 - 2.7480 0.88 2883 163 0.1898 0.2225 REMARK 3 6 2.7480 - 2.5861 0.88 2869 150 0.1887 0.2142 REMARK 3 7 2.5861 - 2.4567 0.87 2797 153 0.1993 0.2332 REMARK 3 8 2.4567 - 2.3498 0.86 2765 146 0.2126 0.2235 REMARK 3 9 2.3498 - 2.2593 0.84 2737 143 0.2124 0.2460 REMARK 3 10 2.2593 - 2.1814 0.82 2639 129 0.2267 0.2852 REMARK 3 11 2.1814 - 2.1132 0.80 2565 128 0.2508 0.3115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 49.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.37130 REMARK 3 B22 (A**2) : 1.40200 REMARK 3 B33 (A**2) : 5.96930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3172 REMARK 3 ANGLE : 1.051 4275 REMARK 3 CHIRALITY : 0.059 526 REMARK 3 PLANARITY : 0.003 531 REMARK 3 DIHEDRAL : 19.281 1229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -6.7335 -9.1367 34.1973 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.0337 REMARK 3 T33: 0.3001 T12: 0.0398 REMARK 3 T13: 0.0576 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.3890 L22: 0.1007 REMARK 3 L33: 0.3368 L12: 0.1142 REMARK 3 L13: -0.1278 L23: 0.0906 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: -0.0251 S13: 0.0068 REMARK 3 S21: -0.0630 S22: 0.1649 S23: 0.2819 REMARK 3 S31: -0.0624 S32: 0.0021 S33: -0.0421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 1.5042 -13.1251 40.5672 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.0547 REMARK 3 T33: 0.2345 T12: 0.0610 REMARK 3 T13: -0.0061 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.3779 L22: 1.1992 REMARK 3 L33: 0.5077 L12: 0.0325 REMARK 3 L13: -0.2043 L23: -0.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.1677 S12: -0.1481 S13: -0.0708 REMARK 3 S21: 0.2998 S22: 0.2018 S23: -0.3383 REMARK 3 S31: 0.1095 S32: 0.0671 S33: -0.0089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 9.0917 -23.0372 -0.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.1906 REMARK 3 T33: 0.3280 T12: 0.0164 REMARK 3 T13: -0.0037 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 0.3132 L22: 0.2792 REMARK 3 L33: 0.1774 L12: 0.1719 REMARK 3 L13: 0.0094 L23: -0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: 0.0409 S13: -0.1737 REMARK 3 S21: 0.0692 S22: -0.0683 S23: 0.0305 REMARK 3 S31: 0.0612 S32: 0.0043 S33: -0.0499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 5.3466 -14.6539 -6.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.2226 REMARK 3 T33: 0.2255 T12: 0.0356 REMARK 3 T13: -0.0189 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.5753 L22: 0.5255 REMARK 3 L33: 0.1381 L12: 0.1520 REMARK 3 L13: 0.0912 L23: -0.2090 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: 0.3157 S13: 0.1507 REMARK 3 S21: -0.0105 S22: -0.0562 S23: 0.0306 REMARK 3 S31: 0.0716 S32: 0.0199 S33: -0.0593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34714 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.112 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M AMMONIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 1% W/V PEG3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.39900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.82450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.37900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.82450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.39900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.37900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B, C AND D LIKELY REMARK 300 FORM DIMERS, RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 95 REMARK 465 SER A 96 REMARK 465 THR A 97 REMARK 465 LYS A 98 REMARK 465 GLN A 99 REMARK 465 GLN A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 ASN A 103 REMARK 465 ASN A 104 REMARK 465 THR A 105 REMARK 465 TYR A 106 REMARK 465 GLY A 107 REMARK 465 GLN A 108 REMARK 465 PHE A 109 REMARK 465 PRO A 110 REMARK 465 ASP A 111 REMARK 465 HIS A 112 REMARK 465 ALA A 113 REMARK 465 LEU A 114 REMARK 465 LEU A 115 REMARK 465 LEU A 116 REMARK 465 GLY A 117 REMARK 465 GLU A 118 REMARK 465 THR A 119 REMARK 465 GLN A 120 REMARK 465 GLN B 95 REMARK 465 SER B 96 REMARK 465 THR B 97 REMARK 465 LYS B 98 REMARK 465 GLN B 99 REMARK 465 GLN B 100 REMARK 465 ALA B 101 REMARK 465 VAL B 102 REMARK 465 ASN B 103 REMARK 465 ASN B 104 REMARK 465 THR B 105 REMARK 465 TYR B 106 REMARK 465 GLY B 107 REMARK 465 GLN B 108 REMARK 465 PHE B 109 REMARK 465 PRO B 110 REMARK 465 ASP B 111 REMARK 465 HIS B 112 REMARK 465 ALA B 113 REMARK 465 LEU B 114 REMARK 465 LEU B 115 REMARK 465 LEU B 116 REMARK 465 GLY B 117 REMARK 465 GLU B 118 REMARK 465 THR B 119 REMARK 465 GLN B 120 REMARK 465 VAL C 93 REMARK 465 GLY C 94 REMARK 465 GLN C 95 REMARK 465 SER C 96 REMARK 465 THR C 97 REMARK 465 LYS C 98 REMARK 465 GLN C 99 REMARK 465 GLN C 100 REMARK 465 ALA C 101 REMARK 465 VAL C 102 REMARK 465 ASN C 103 REMARK 465 ASN C 104 REMARK 465 THR C 105 REMARK 465 TYR C 106 REMARK 465 GLY C 107 REMARK 465 GLN C 108 REMARK 465 PHE C 109 REMARK 465 PRO C 110 REMARK 465 ASP C 111 REMARK 465 HIS C 112 REMARK 465 ALA C 113 REMARK 465 LEU C 114 REMARK 465 LEU C 115 REMARK 465 LEU C 116 REMARK 465 GLY C 117 REMARK 465 GLU C 118 REMARK 465 THR C 119 REMARK 465 GLN C 120 REMARK 465 GLY D 94 REMARK 465 GLN D 95 REMARK 465 SER D 96 REMARK 465 THR D 97 REMARK 465 LYS D 98 REMARK 465 GLN D 99 REMARK 465 GLN D 100 REMARK 465 ALA D 101 REMARK 465 VAL D 102 REMARK 465 ASN D 103 REMARK 465 ASN D 104 REMARK 465 THR D 105 REMARK 465 TYR D 106 REMARK 465 GLY D 107 REMARK 465 GLN D 108 REMARK 465 PHE D 109 REMARK 465 PRO D 110 REMARK 465 ASP D 111 REMARK 465 HIS D 112 REMARK 465 ALA D 113 REMARK 465 LEU D 114 REMARK 465 LEU D 115 REMARK 465 LEU D 116 REMARK 465 GLY D 117 REMARK 465 GLU D 118 REMARK 465 THR D 119 REMARK 465 GLN D 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 27 76.54 -161.14 REMARK 500 LEU A 86 -71.32 -54.36 REMARK 500 ARG A 88 -73.31 -65.04 REMARK 500 LEU A 92 -75.38 -42.68 REMARK 500 VAL A 93 -80.49 -49.12 REMARK 500 ASN B 29 62.16 -112.81 REMARK 500 ALA B 32 2.87 -60.25 REMARK 500 SER B 90 2.07 -61.72 REMARK 500 LEU B 92 -39.23 -36.06 REMARK 500 VAL B 93 -91.20 -67.42 REMARK 500 TRP D 30 7.23 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC38725 RELATED DB: TARGETDB DBREF 3NKZ A 1 120 UNP A1JSR8 FLIT_YERE8 1 120 DBREF 3NKZ B 1 120 UNP A1JSR8 FLIT_YERE8 1 120 DBREF 3NKZ C 1 120 UNP A1JSR8 FLIT_YERE8 1 120 DBREF 3NKZ D 1 120 UNP A1JSR8 FLIT_YERE8 1 120 SEQADV 3NKZ SER A -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN A -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA A 0 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ SER B -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN B -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA B 0 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ SER C -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN C -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA C 0 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ SER D -2 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ASN D -1 UNP A1JSR8 EXPRESSION TAG SEQADV 3NKZ ALA D 0 UNP A1JSR8 EXPRESSION TAG SEQRES 1 A 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 A 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 A 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 A 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 A 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 A 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 A 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 A 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 A 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 A 123 LEU LEU GLY GLU THR GLN SEQRES 1 B 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 B 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 B 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 B 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 B 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 B 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 B 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 B 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 B 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 B 123 LEU LEU GLY GLU THR GLN SEQRES 1 C 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 C 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 C 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 C 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 C 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 C 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 C 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 C 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 C 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 C 123 LEU LEU GLY GLU THR GLN SEQRES 1 D 123 SER ASN ALA MSE GLU ARG HIS GLN HIS LEU LEU SER GLU SEQRES 2 D 123 TYR GLN GLN ILE LEU THR LEU SER GLU GLN MSE LEU VAL SEQRES 3 D 123 LEU ALA THR GLU GLY ASN TRP ASP ALA LEU VAL ASP LEU SEQRES 4 D 123 GLU MSE THR TYR LEU LYS ALA VAL GLU SER THR ALA ASN SEQRES 5 D 123 ILE THR ILE SER SER CYS SER SER LEU MSE LEU GLN ASP SEQRES 6 D 123 LEU LEU ARG GLU LYS LEU ARG ALA ILE LEU ASP ASN GLU SEQRES 7 D 123 ILE GLU ILE LYS ARG LEU LEU GLN LEU ARG LEU ASP ARG SEQRES 8 D 123 LEU SER ASP LEU VAL GLY GLN SER THR LYS GLN GLN ALA SEQRES 9 D 123 VAL ASN ASN THR TYR GLY GLN PHE PRO ASP HIS ALA LEU SEQRES 10 D 123 LEU LEU GLY GLU THR GLN MODRES 3NKZ MSE A 1 MET SELENOMETHIONINE MODRES 3NKZ MSE A 21 MET SELENOMETHIONINE MODRES 3NKZ MSE A 38 MET SELENOMETHIONINE MODRES 3NKZ MSE A 59 MET SELENOMETHIONINE MODRES 3NKZ MSE B 1 MET SELENOMETHIONINE MODRES 3NKZ MSE B 21 MET SELENOMETHIONINE MODRES 3NKZ MSE B 38 MET SELENOMETHIONINE MODRES 3NKZ MSE B 59 MET SELENOMETHIONINE MODRES 3NKZ MSE C 1 MET SELENOMETHIONINE MODRES 3NKZ MSE C 21 MET SELENOMETHIONINE MODRES 3NKZ MSE C 38 MET SELENOMETHIONINE MODRES 3NKZ MSE C 59 MET SELENOMETHIONINE MODRES 3NKZ MSE D 1 MET SELENOMETHIONINE MODRES 3NKZ MSE D 21 MET SELENOMETHIONINE MODRES 3NKZ MSE D 38 MET SELENOMETHIONINE MODRES 3NKZ MSE D 59 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 21 8 HET MSE A 38 13 HET MSE A 59 8 HET MSE B 1 13 HET MSE B 21 8 HET MSE B 38 8 HET MSE B 59 8 HET MSE C 1 8 HET MSE C 21 8 HET MSE C 38 8 HET MSE C 59 8 HET MSE D 1 8 HET MSE D 21 8 HET MSE D 38 8 HET MSE D 59 8 HET SO4 A 121 5 HET PG4 A 122 13 HET SO4 B 121 5 HET SO4 C 121 5 HET PG4 C 122 13 HET SO4 D 121 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 11 HOH *87(H2 O) HELIX 1 1 ASN A -1 THR A 26 1 28 HELIX 2 2 ASP A 31 SER A 54 1 24 HELIX 3 3 SER A 57 GLY A 94 1 38 HELIX 4 4 SER B -2 GLU B 27 1 30 HELIX 5 5 TRP B 30 SER B 54 1 25 HELIX 6 6 SER B 57 VAL B 93 1 37 HELIX 7 7 SER C -2 GLU C 27 1 30 HELIX 8 8 ASN C 29 SER C 54 1 26 HELIX 9 9 SER C 57 ASP C 91 1 35 HELIX 10 10 SER D -2 GLU D 27 1 30 HELIX 11 11 ASP D 31 SER D 54 1 24 HELIX 12 12 SER D 57 VAL D 93 1 37 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C GLN A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N LEU A 22 1555 1555 1.33 LINK C GLU A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N THR A 39 1555 1555 1.33 LINK C LEU A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N LEU A 60 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C GLN B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N LEU B 22 1555 1555 1.33 LINK C GLU B 37 N MSE B 38 1555 1555 1.32 LINK C MSE B 38 N THR B 39 1555 1555 1.33 LINK C LEU B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N LEU B 60 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N GLU C 2 1555 1555 1.33 LINK C GLN C 20 N MSE C 21 1555 1555 1.34 LINK C MSE C 21 N LEU C 22 1555 1555 1.32 LINK C GLU C 37 N MSE C 38 1555 1555 1.32 LINK C MSE C 38 N THR C 39 1555 1555 1.33 LINK C LEU C 58 N MSE C 59 1555 1555 1.32 LINK C MSE C 59 N LEU C 60 1555 1555 1.33 LINK C ALA D 0 N MSE D 1 1555 1555 1.33 LINK C MSE D 1 N GLU D 2 1555 1555 1.33 LINK C GLN D 20 N MSE D 21 1555 1555 1.33 LINK C MSE D 21 N LEU D 22 1555 1555 1.32 LINK C GLU D 37 N MSE D 38 1555 1555 1.33 LINK C MSE D 38 N THR D 39 1555 1555 1.33 LINK C LEU D 58 N MSE D 59 1555 1555 1.33 LINK C MSE D 59 N LEU D 60 1555 1555 1.32 SITE 1 AC1 6 ARG A 3 HIS A 4 HOH A 127 CYS B 55 SITE 2 AC1 6 SER B 56 ARG C 3 SITE 1 AC2 6 ILE A 14 THR A 47 ALA A 48 ILE A 71 SITE 2 AC2 6 TYR B 11 ILE B 71 SITE 1 AC3 4 SER A 54 SER A 56 ARG B 3 HIS B 4 SITE 1 AC4 7 ARG A 3 ARG C 3 HIS C 4 HOH C 134 SITE 2 AC4 7 SER D 54 CYS D 55 SER D 56 SITE 1 AC5 5 TYR C 40 VAL D 44 THR D 47 ALA D 48 SITE 2 AC5 5 GLU D 75 SITE 1 AC6 6 SER A -2 SER C 54 CYS C 55 SER C 56 SITE 2 AC6 6 ARG D 3 HIS D 4 CRYST1 66.798 66.758 137.649 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007265 0.00000 CONECT 17 20 CONECT 20 17 21 CONECT 21 20 22 24 CONECT 22 21 23 28 CONECT 23 22 CONECT 24 21 25 CONECT 25 24 26 CONECT 26 25 27 CONECT 27 26 CONECT 28 22 CONECT 186 193 CONECT 193 186 194 CONECT 194 193 195 197 CONECT 195 194 196 201 CONECT 196 195 CONECT 197 194 198 CONECT 198 197 199 CONECT 199 198 200 CONECT 200 199 CONECT 201 195 CONECT 317 324 CONECT 324 317 325 326 CONECT 325 324 327 329 CONECT 326 324 327 330 CONECT 327 325 326 328 337 CONECT 328 327 CONECT 329 325 331 CONECT 330 326 332 CONECT 331 329 333 CONECT 332 330 334 CONECT 333 331 335 CONECT 334 332 336 CONECT 335 333 CONECT 336 334 CONECT 337 327 CONECT 475 481 CONECT 481 475 482 CONECT 482 481 483 485 CONECT 483 482 484 489 CONECT 484 483 CONECT 485 482 486 CONECT 486 485 487 CONECT 487 486 488 CONECT 488 487 CONECT 489 483 CONECT 798 801 CONECT 801 798 802 803 CONECT 802 801 804 806 CONECT 803 801 804 807 CONECT 804 802 803 805 814 CONECT 805 804 CONECT 806 802 808 CONECT 807 803 809 CONECT 808 806 810 CONECT 809 807 811 CONECT 810 808 812 CONECT 811 809 813 CONECT 812 810 CONECT 813 811 CONECT 814 804 CONECT 972 979 CONECT 979 972 980 CONECT 980 979 981 983 CONECT 981 980 982 987 CONECT 982 981 CONECT 983 980 984 CONECT 984 983 985 CONECT 985 984 986 CONECT 986 985 CONECT 987 981 CONECT 1103 1110 CONECT 1110 1103 1111 CONECT 1111 1110 1112 1114 CONECT 1112 1111 1113 1118 CONECT 1113 1112 CONECT 1114 1111 1115 CONECT 1115 1114 1116 CONECT 1116 1115 1117 CONECT 1117 1116 CONECT 1118 1112 CONECT 1256 1262 CONECT 1262 1256 1263 CONECT 1263 1262 1264 1266 CONECT 1264 1263 1265 1270 CONECT 1265 1264 CONECT 1266 1263 1267 CONECT 1267 1266 1268 CONECT 1268 1267 1269 CONECT 1269 1268 CONECT 1270 1264 CONECT 1579 1582 CONECT 1582 1579 1583 CONECT 1583 1582 1584 1586 CONECT 1584 1583 1585 1590 CONECT 1585 1584 CONECT 1586 1583 1587 CONECT 1587 1586 1588 CONECT 1588 1587 1589 CONECT 1589 1588 CONECT 1590 1584 CONECT 1748 1755 CONECT 1755 1748 1756 CONECT 1756 1755 1757 1759 CONECT 1757 1756 1758 1763 CONECT 1758 1757 CONECT 1759 1756 1760 CONECT 1760 1759 1761 CONECT 1761 1760 1762 CONECT 1762 1761 CONECT 1763 1757 CONECT 1884 1891 CONECT 1891 1884 1892 CONECT 1892 1891 1893 1895 CONECT 1893 1892 1894 1899 CONECT 1894 1893 CONECT 1895 1892 1896 CONECT 1896 1895 1897 CONECT 1897 1896 1898 CONECT 1898 1897 CONECT 1899 1893 CONECT 2037 2043 CONECT 2043 2037 2044 CONECT 2044 2043 2045 2047 CONECT 2045 2044 2046 2051 CONECT 2046 2045 CONECT 2047 2044 2048 CONECT 2048 2047 2049 CONECT 2049 2048 2050 CONECT 2050 2049 CONECT 2051 2045 CONECT 2349 2352 CONECT 2352 2349 2353 CONECT 2353 2352 2354 2356 CONECT 2354 2353 2355 2360 CONECT 2355 2354 CONECT 2356 2353 2357 CONECT 2357 2356 2358 CONECT 2358 2357 2359 CONECT 2359 2358 CONECT 2360 2354 CONECT 2518 2525 CONECT 2525 2518 2526 CONECT 2526 2525 2527 2529 CONECT 2527 2526 2528 2533 CONECT 2528 2527 CONECT 2529 2526 2530 CONECT 2530 2529 2531 CONECT 2531 2530 2532 CONECT 2532 2531 CONECT 2533 2527 CONECT 2649 2656 CONECT 2656 2649 2657 CONECT 2657 2656 2658 2660 CONECT 2658 2657 2659 2664 CONECT 2659 2658 CONECT 2660 2657 2661 CONECT 2661 2660 2662 CONECT 2662 2661 2663 CONECT 2663 2662 CONECT 2664 2658 CONECT 2802 2808 CONECT 2808 2802 2809 CONECT 2809 2808 2810 2812 CONECT 2810 2809 2811 2816 CONECT 2811 2810 CONECT 2812 2809 2813 CONECT 2813 2812 2814 CONECT 2814 2813 2815 CONECT 2815 2814 CONECT 2816 2810 CONECT 3113 3114 3115 3116 3117 CONECT 3114 3113 CONECT 3115 3113 CONECT 3116 3113 CONECT 3117 3113 CONECT 3118 3119 CONECT 3119 3118 3120 CONECT 3120 3119 3121 CONECT 3121 3120 3122 CONECT 3122 3121 3123 CONECT 3123 3122 3124 CONECT 3124 3123 3125 CONECT 3125 3124 3126 CONECT 3126 3125 3127 CONECT 3127 3126 3128 CONECT 3128 3127 3129 CONECT 3129 3128 3130 CONECT 3130 3129 CONECT 3131 3132 3133 3134 3135 CONECT 3132 3131 CONECT 3133 3131 CONECT 3134 3131 CONECT 3135 3131 CONECT 3136 3137 3138 3139 3140 CONECT 3137 3136 CONECT 3138 3136 CONECT 3139 3136 CONECT 3140 3136 CONECT 3141 3142 CONECT 3142 3141 3143 CONECT 3143 3142 3144 CONECT 3144 3143 3145 CONECT 3145 3144 3146 CONECT 3146 3145 3147 CONECT 3147 3146 3148 CONECT 3148 3147 3149 CONECT 3149 3148 3150 CONECT 3150 3149 3151 CONECT 3151 3150 3152 CONECT 3152 3151 3153 CONECT 3153 3152 CONECT 3154 3155 3156 3157 3158 CONECT 3155 3154 CONECT 3156 3154 CONECT 3157 3154 CONECT 3158 3154 MASTER 456 0 22 12 0 0 11 6 3218 4 216 40 END